Prupe.4G081200_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
3959094 .. 3961495
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G081200.1

Sequence Viewer

Length: 1227 bp
ATGGCAAGTTTTTTTAGCAGAATCTCCACATTCAGGATTTTTCTTCTATGTTCACTCTGTTTCTCAGATTTTGGTTTCCTGCAAGGAGTTTCATCACTTGGTATCAATTATGGCCAACTTGGCAACAATTTGCTGCCACCAGAGAAAGTCCTGGACCTCTTGAGCTCTCTTAGGATCACGAAAGCACGAATTTACGACACGAATCCTCAGGTGCTCACAGCATTTGCAAATTCTGGTGTTGAGCTAATGGTGACCATTGAGAATGCAATGCTAGGCCAATTAAGCAACCCCCAAGCAGCCTTCCAATGGGTTACCTCCCACATCAAGCCTTATGTTCCAGCCACAAAAATCACCAGCATTGCTGTGGGCAATGAGGTCTTCACAGATGATGACACAACAGTTCTGCTATCCAATCTGGTTCCAGCCATGGTCAGCATTCAAGGGGCTCTAGCTCAGCTAGGCCTTGACCAATACATCAAACTCTCAACCCCTTGTTCTTTGGCTGTGCTTCAAGAATCTTATCCGCCTTCGGCAGGTAGCTTCAAAACTGAGGTCTCGGGGGTCATGTCACAATTGTTACAGTTCCTTCAGACCACAAAGGCACCTTTCTGGATCAATGCCTATCCATATTTTGCATACAAAGGTGACCCAAATAGAGTCTCTTTGGACTATGTGCTTTTCAACCCCAATCAAGGAATGGTTGATCCTTTTACCAAACTACAGTATGACAACATGTTGTATGCTCAAGTTGATGCAGTCATTTATGCCATGGCTAGGCTGGGATTCAATGGCATTGAGGTTAAGGTCTCCGAGACTGGCTGGCCATCCAACGGGGACGAAAATGAAATCGGTGCAACTTTGCAGAATGCTGCAATTTACAATAGAAATCTGTTGAGGAGGCAGCTGCAAAATGAAGGCACGCCTTTGAGGCCTAAACTGAGGCTGGAAGTCTATGTGTTTGCTCTGTTCAATGAGAACATGAAGCCGGGGCCGAGTTCCGAAAGGAACTATGGCCTGTTTCACCCTGATGGCACCATGGCTTATAATGTTGGGTTGTCTTCCGTGTCAACTAATTCAGCCACAACTCCATCCACAACATCCTCATCAGTCTCTGATTTTACTTCTTCTGCTACAAAGGCAGCAACCATGGAATATAATCAAAGCTGGGTGTACTGGATGCTTGTATGTGTGCTGAGCTTTCAAGTTTATATGAGAAGACCATTTTAA

Protein Analysis

409

Amino Acids

45.14

Weight (kDa)

5.55

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
Acc36I ACCTGC 1 cut(s) 524
AccB1I GGYRCC 2 cut(s) 601, 1031
AciI CCGC 1 cut(s) 524
AclWI GGATC 3 cut(s) 182, 620, 698
AcoI YGGCCR 2 cut(s) 112, 821
AcsI RAATTY 2 cut(s) 189, 229
AcuI CTGAAG 1 cut(s) 572
AfaI GTAC 1 cut(s) 1172
AfiI CCNNNNNNNGG 6 cut(s) 33, 306, 533, 692, 774, 830
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 7 cut(s) 440, 512, 544, 682, 787, 970, 1202
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 8 cut(s) 165, 244, 452, 457, 540, 904, 1164, 1197
AluI AGCT 8 cut(s) 165, 244, 452, 457, 540, 904, 1164, 1197
Alw21I GWGCWC 2 cut(s) 167, 216
Alw26I GTCTC 5 cut(s) 559, 664, 806, 811, 1114
AlwI GGATC 3 cut(s) 182, 620, 698
AlwNI CAGNNNCTG 1 cut(s) 1112
Ama87I CYCGRG 1 cut(s) 556
AoxI GGCC 7 cut(s) 112, 274, 460, 821, 929, 989, 1012
ApeKI GCWGC 6 cut(s) 133, 296, 869, 901, 904, 1139
ApoI RAATTY 2 cut(s) 189, 229
ArsI GACNNNNNNTTYG 2 cut(s) 537, 569
AspS9I GGNCC 2 cut(s) 154, 989
AsuC2I CCSGG 1 cut(s) 987
AsuHPI GGTGA 4 cut(s) 262, 343, 656, 1013
AvaI CYCGRG 1 cut(s) 556
AvaII GGWCC 1 cut(s) 154
AxyI CCTNAGG 1 cut(s) 207
BalI TGGCCA 2 cut(s) 114, 823
BanI GGYRCC 2 cut(s) 601, 1031
BanII GRGCYC 2 cut(s) 167, 448
BbsI GAAGAC 3 cut(s) 370, 1050, 1222
Bbv12I GWGCWC 2 cut(s) 167, 216
BbvI GCAGC 6 cut(s) 120, 308, 856, 891, 913, 1151
BccI CCATC 3 cut(s) 832, 1022, 1096
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 1 cut(s) 987
BcoDI GTCTC 5 cut(s) 559, 664, 806, 811, 1114
BfaI CTAG 4 cut(s) 272, 449, 458, 774
BfmI CTRYAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 524
BglI GCCNNNNNGGC 2 cut(s) 120, 928
BisI GCNGC 6 cut(s) 134, 297, 870, 902, 905, 1140
BlpI GCTNAGC 2 cut(s) 453, 1193
BlsI GCNGC 6 cut(s) 135, 298, 871, 903, 906, 1141
Bme1390I CCNGG 2 cut(s) 152, 987
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 2 cut(s) 154, 989
BmiI GGNNCC 4 cut(s) 420, 603, 990, 1033
BmrFI CCNGG 2 cut(s) 152, 987
BmsI GCATC 2 cut(s) 742, 1167
BpiI GAAGAC 3 cut(s) 370, 1050, 1222
Bpu1102I GCTNAGC 2 cut(s) 453, 1193
BpuEI CTTGAG 2 cut(s) 181, 729
BpuMI CCSGG 1 cut(s) 987
BsaI GGTCTC 2 cut(s) 559, 811
BsaJI CCNNGG 5 cut(s) 426, 768, 986, 1035, 1146
Bsc4I CCNNNNNNNGG 6 cut(s) 33, 306, 533, 692, 774, 830
Bse1I ACTGG 2 cut(s) 820, 1178
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 3 cut(s) 273, 357, 376
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 5 cut(s) 426, 768, 986, 1035, 1146
BseGI GGATG 4 cut(s) 824, 1088, 1097, 1182
BseLI CCNNNNNNNGG 6 cut(s) 33, 306, 533, 692, 774, 830
BseMI GCAATG 3 cut(s) 273, 357, 376
BseMII CTCAG 6 cut(s) 78, 221, 467, 540, 929, 1184
BseNI ACTGG 2 cut(s) 820, 1178
BseRI GAGGAG 1 cut(s) 910
BseXI GCAGC 6 cut(s) 120, 308, 856, 891, 913, 1151
BseYI CCCAGC 2 cut(s) 778, 1164
BshFI GGCC 7 cut(s) 114, 276, 462, 823, 931, 991, 1014
BshNI GGYRCC 2 cut(s) 601, 1031
BsiHKAI GWGCWC 2 cut(s) 167, 216
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 1 cut(s) 986
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 6 cut(s) 33, 306, 533, 692, 774, 830
BsmAI GTCTC 5 cut(s) 559, 664, 806, 811, 1114
BsmFI GGGAC 1 cut(s) 848
BsmI GAATGC 3 cut(s) 268, 435, 871
BsnI GGCC 7 cut(s) 114, 276, 462, 823, 931, 991, 1014
Bso31I GGTCTC 2 cut(s) 559, 811
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 3 cut(s) 167, 216, 448
Bsp143I GATC 3 cut(s) 174, 612, 703
Bsp1720I GCTNAGC 2 cut(s) 453, 1193
Bsp19I CCATGG 4 cut(s) 426, 768, 1035, 1146
BspACI CCGC 1 cut(s) 524
BspANI GGCC 7 cut(s) 114, 276, 462, 823, 931, 991, 1014
BspCNI CTCAG 6 cut(s) 77, 220, 466, 541, 930, 1185
BspLI GGNNCC 4 cut(s) 420, 603, 990, 1033
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 3 cut(s) 182, 620, 698
BspT107I GGYRCC 2 cut(s) 601, 1031
BspTNI GGTCTC 2 cut(s) 559, 811
BsrDI GCAATG 3 cut(s) 273, 357, 376
BsrI ACTGG 2 cut(s) 820, 1178
BssECI CCNNGG 5 cut(s) 426, 768, 986, 1035, 1146
BssMI GATC 3 cut(s) 174, 612, 703
BssT1I CCWWGG 4 cut(s) 426, 768, 1035, 1146
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 400, 582, 723
BstC8I GCNNGC 2 cut(s) 821, 920
BstDEI CTNAG 7 cut(s) 64, 170, 207, 453, 549, 938, 1193
BstDSI CCRYGG 4 cut(s) 426, 768, 1035, 1146
BstEII GGTNACC 3 cut(s) 250, 310, 644
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 4 cut(s) 824, 1088, 1097, 1182
BstKTI GATC 3 cut(s) 177, 615, 706
BstMAI GTCTC 5 cut(s) 559, 664, 806, 811, 1114
BstMBI GATC 3 cut(s) 174, 612, 703
BstMWI GCNNNNNNNGC 4 cut(s) 120, 282, 928, 1136
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 736
BstPI GGTNACC 3 cut(s) 250, 310, 644
BstSCI CCNGG 2 cut(s) 150, 985
BstSFI CTRYAG 1 cut(s) 719
BstV1I GCAGC 6 cut(s) 120, 308, 856, 891, 913, 1151
BstV2I GAAGAC 3 cut(s) 370, 1050, 1222
Bsu36I CCTNAGG 1 cut(s) 207
BsuRI GGCC 7 cut(s) 114, 276, 462, 823, 931, 991, 1014
BtgI CCRYGG 4 cut(s) 426, 768, 1035, 1146
BtsCI GGATG 4 cut(s) 824, 1088, 1097, 1182
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 2 cut(s) 821, 920
CaiI CAGNNNCTG 1 cut(s) 1112
Cfr13I GGNCC 2 cut(s) 154, 989
Csp6I GTAC 1 cut(s) 1171
CviAII CATG 7 cut(s) 427, 565, 733, 769, 979, 1036, 1147
CviQI GTAC 1 cut(s) 1171
DdeI CTNAG 7 cut(s) 64, 170, 207, 453, 549, 938, 1193
DpnI GATC 3 cut(s) 176, 614, 705
DpnII GATC 3 cut(s) 174, 612, 703
EaeI YGGCCR 2 cut(s) 112, 821
EciI GGCGGA 1 cut(s) 513
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 4 cut(s) 426, 768, 1035, 1146
Eco147I AGGCCT 2 cut(s) 462, 931
Eco24I GRGCYC 2 cut(s) 167, 448
Eco31I GGTCTC 2 cut(s) 559, 811
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 572
Eco81I CCTNAGG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 556
Eco91I GGTNACC 3 cut(s) 250, 310, 644
EcoICRI GAGCTC 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO65I GGTNACC 3 cut(s) 250, 310, 644
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 4 cut(s) 426, 768, 1035, 1146
EcoT38I GRGCYC 2 cut(s) 167, 448
ErhI CCWWGG 4 cut(s) 426, 768, 1035, 1146
FaeI CATG 7 cut(s) 430, 568, 736, 772, 982, 1039, 1150
FaqI GGGAC 1 cut(s) 848
FatI CATG 7 cut(s) 426, 564, 732, 768, 978, 1035, 1146
Fnu4HI GCNGC 6 cut(s) 134, 297, 870, 902, 905, 1140
FokI GGATG 4 cut(s) 811, 1075, 1084, 1189
FriOI GRGCYC 2 cut(s) 167, 448
Fsp4HI GCNGC 6 cut(s) 134, 297, 870, 902, 905, 1140
FspBI CTAG 4 cut(s) 272, 449, 458, 774
GluI GCNGC 6 cut(s) 134, 297, 870, 902, 905, 1140
GsaI CCCAGC 2 cut(s) 782, 1168
HaeIII GGCC 7 cut(s) 114, 276, 462, 823, 931, 991, 1014
HapII CCGG 1 cut(s) 986
Hin1II CATG 7 cut(s) 430, 568, 736, 772, 982, 1039, 1150
HincII GTYRAC 1 cut(s) 1068
HindII GTYRAC 1 cut(s) 1068
HinfI GANTC 5 cut(s) 21, 202, 515, 657, 783
HpaII CCGG 1 cut(s) 986
HphI GGTGA 4 cut(s) 262, 343, 656, 1013
Hpy166II GTNNAC 3 cut(s) 53, 1068, 1171
Hpy188I TCNGA 5 cut(s) 67, 591, 811, 1000, 1114
Hpy188III TCNNGA 5 cut(s) 34, 160, 178, 512, 610
Hpy8I GTNNAC 3 cut(s) 53, 1068, 1171
HpyAV CCTTC 4 cut(s) 310, 537, 596, 908
HpyCH4III ACNGT 3 cut(s) 400, 582, 723
HpyCH4V TGCA 9 cut(s) 82, 227, 266, 635, 755, 854, 862, 872, 907
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 282, 928, 1136
HpyF3I CTNAG 7 cut(s) 64, 170, 207, 453, 549, 938, 1193
Hsp92II CATG 7 cut(s) 430, 568, 736, 772, 982, 1039, 1150
Kzo9I GATC 3 cut(s) 174, 612, 703
Lsp1109I GCAGC 6 cut(s) 120, 308, 856, 891, 913, 1151
LweI GCATC 2 cut(s) 742, 1167
MaeI CTAG 4 cut(s) 272, 449, 458, 774
MaeIII GTNAC 5 cut(s) 250, 310, 567, 576, 644
MalI GATC 3 cut(s) 176, 614, 705
MboI GATC 3 cut(s) 174, 612, 703
MboII GAAGA 5 cut(s) 35, 370, 1050, 1116, 1227
MfeI CAATTG 1 cut(s) 572
MhlI GDGCHC 3 cut(s) 167, 216, 448
MlsI TGGCCA 2 cut(s) 114, 823
MluCI AATT 8 cut(s) 106, 127, 189, 229, 278, 572, 873, 1072
MluNI TGGCCA 2 cut(s) 114, 823
MlyI GAGTC 1 cut(s) 666
MmeI TCCRAC 1 cut(s) 852
Mox20I TGGCCA 2 cut(s) 114, 823
MscI TGGCCA 2 cut(s) 114, 823
MseI TTAA 3 cut(s) 281, 801, 1225
MslI CAYNNNNRTG 2 cut(s) 362, 1026
Msp20I TGGCCA 2 cut(s) 114, 823
MspA1I CMGCKG 1 cut(s) 904
MspI CCGG 1 cut(s) 986
MspR9I CCNGG 2 cut(s) 152, 987
MunI CAATTG 1 cut(s) 572
Mva1269I GAATGC 3 cut(s) 268, 435, 871
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 4 cut(s) 120, 282, 928, 1136
NciI CCSGG 1 cut(s) 987
NcoI CCATGG 4 cut(s) 426, 768, 1035, 1146
NdeII GATC 3 cut(s) 174, 612, 703
NlaIII CATG 7 cut(s) 430, 568, 736, 772, 982, 1039, 1150
NlaIV GGNNCC 4 cut(s) 420, 603, 990, 1033
NmeAIII GCCGAG 1 cut(s) 1017
NmuCI GTSAC 3 cut(s) 250, 567, 644
NspI RCATGY 1 cut(s) 736
PceI AGGCCT 2 cut(s) 462, 931
PciI ACATGT 1 cut(s) 732
PctI GAATGC 3 cut(s) 268, 435, 871
PfeI GAWTC 4 cut(s) 21, 202, 515, 783
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 6 cut(s) 135, 298, 871, 903, 906, 1141
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
PscI ACATGT 1 cut(s) 732
PsiI TTATAA 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 150
PspEI GGTNACC 3 cut(s) 250, 310, 644
PspFI CCCAGC 2 cut(s) 778, 1164
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 4 cut(s) 420, 603, 990, 1033
PspPI GGNCC 2 cut(s) 154, 989
PstNI CAGNNNCTG 1 cut(s) 1112
PvuII CAGCTG 1 cut(s) 904
RsaI GTAC 1 cut(s) 1172
RsaNI GTAC 1 cut(s) 1171
RseI CAYNNNNRTG 2 cut(s) 362, 1026
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 281, 801, 1225
SatI GCNGC 6 cut(s) 134, 297, 870, 902, 905, 1140
Sau3AI GATC 3 cut(s) 174, 612, 703
Sau96I GGNCC 2 cut(s) 154, 989
SchI GAGTC 1 cut(s) 666
ScrFI CCNGG 2 cut(s) 152, 987
SduI GDGCHC 3 cut(s) 167, 216, 448
SfaNI GCATC 2 cut(s) 742, 1167
SfcI CTRYAG 1 cut(s) 719
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 2 cut(s) 362, 1026
SmlI CTYRAG 2 cut(s) 160, 744
SmoI CTYRAG 2 cut(s) 160, 744
Sse9I AATT 8 cut(s) 106, 127, 189, 229, 278, 572, 873, 1072
SseBI AGGCCT 2 cut(s) 462, 931
SsiI CCGC 1 cut(s) 524
SspMI CTAG 4 cut(s) 272, 449, 458, 774
SstI GAGCTC 1 cut(s) 167
StuI AGGCCT 2 cut(s) 462, 931
StyD4I CCNGG 2 cut(s) 150, 985
StyI CCWWGG 4 cut(s) 426, 768, 1035, 1146
TaaI ACNGT 3 cut(s) 400, 582, 723
TasI AATT 8 cut(s) 106, 127, 189, 229, 278, 572, 873, 1072
TatI WGTACW 1 cut(s) 1170
TfiI GAWTC 4 cut(s) 21, 202, 515, 783
Tru1I TTAA 3 cut(s) 281, 801, 1225
Tru9I TTAA 3 cut(s) 281, 801, 1225
TseFI GTSAC 3 cut(s) 250, 567, 644
TseI GCWGC 6 cut(s) 133, 296, 869, 901, 904, 1139
Tsp45I GTSAC 3 cut(s) 250, 567, 644
TspDTI ATGAA 4 cut(s) 81, 858, 927, 995
TspGWI ACGGA 1 cut(s) 1051
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 2 cut(s) 189, 229
XceI RCATGY 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 3 cut(s) 361, 694, 775
XspI CTAG 4 cut(s) 272, 449, 458, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.