RLG00000006390

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002223
Physical Location & Seq
Reverse (-)
6701012 .. 6702301
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006390

Sequence Viewer

Length: 1290 bp
ATGGCAAGTTTTAGAAGAATCAGTGCTGTTTTTCTTCTTCTGTGTTCGCTGATTTGTTTACTACATGGAGTTTCATCACTTGGCATAAACTATGGCCAACTCGGTGACGATTTGCTGCCACCACAGCAAGTTGTGAACCTCCTAACCACCAACAACATCACCAAAACAAGAATCTACGACACAAATCCACAAATATTAACTGCATTCGCCAATTCCAATATTGAGCTAATTGTGACAGTTGAAAATGAAGTGCTGGGAGAATTAACCAATTCCGAAGCAGGCCTTCAATGGGTTAGCACACACATCAAGCCTTACTTTCCCGCAACGAAAATCACAGGCATTGCTGTAGGGAACGAGATTGATGCAACGGATTTGCTACCTAGCCTTGTACCGGCCATGTCCAGCATTCAAGGGGCACTTTCCCAGCTAGGCCTTGACTCACACATCAAGGTGTCATCGCCTTTTTCTTATTCGGTGATCAAAGAGTCTTATCCGCCTTCTGCTGGCAGTTTCAAAAGCGAGGTTTCCAGTGTAATGTCACAATTGTTACAGTTTCTGTCAAGCACAAAGGCACCATTTTGGATCAATGCATATCCTTACTTTGCATACCAGGGCAACTCGAAAGAAATTCCTCTAGACTATGTGCTTTTCAGTAATGCCGGTTCATCAGCAGGAGTGACTGACCCTACTAGCAATTTGCACTATGAAAACATGTTGTATGCTCAAGTAGATGCAGTCACTTATGCCATTTCTAAATTGGGCTTCGATGGCATAGAGGTTAGGGTCACAGAGACAGGGTGGCCATCAAAAGGGGATGCTGGTGAAGTTGGTGCAAGTTTAGAGAATGCTGCTATATACAATGGGAACTTGTTGAAGAGGCAATTGGCCAAGGAAGGTACACCTTTGAAGCCTAAGCTTGACGTCTATATTTTTGCTCTTTTCAACGAGAACAAGAAGCCTGGACCAACATCGGAGAGGAATTTTGGTCTATTCGAACTGGATGGAACTTCGGCTTACAATGTGGGCTTGTCTGGATCATCATCTACCTCAACTAATGCCCCATCACCCCCATCGCCAAGCCTATCAAAACCACCAACTTCAGCTACCAACTCAACTGGTGCCTCATCATCACCCTCAAGCTCGGCTACTAATTCAACTAATGCCTCATCCCCCTCGTCACTTCCTGAGATTGATATGACTTATTCCTCTGGTGCCAAGGCAGCAACAATGGGAAGCTTGGTGTACATTTTTCTTGGTGTATTGACCTTCCAACTTTATATGATGATCTAG

Protein Analysis

430

Amino Acids

45.62

Weight (kDa)

5.02

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 27 - 341 8.2e-80 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 924
AccB1I GGYRCC 3 cut(s) 571, 1118, 1211
AciI CCGC 2 cut(s) 321, 494
AclWI GGATC 2 cut(s) 590, 1042
AcoI YGGCCR 4 cut(s) 94, 393, 800, 885
AcsI RAATTY 2 cut(s) 627, 979
AcuI CTGAAG 1 cut(s) 1083
AcyI GRCGYC 1 cut(s) 921
AfaI GTAC 3 cut(s) 390, 898, 1244
AfiI CCNNNNNNNGG 4 cut(s) 289, 391, 503, 809
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 8 cut(s) 242, 287, 410, 514, 874, 907, 943, 1155
AjnI CCWGG 2 cut(s) 609, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AluBI AGCT 6 cut(s) 226, 427, 916, 1103, 1140, 1236
AluI AGCT 6 cut(s) 226, 427, 916, 1103, 1140, 1236
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 2 cut(s) 590, 1042
AlwNI CAGNNNCTG 1 cut(s) 556
AoxI GGCC 6 cut(s) 94, 280, 393, 430, 800, 885
ApeKI GCWGC 3 cut(s) 115, 848, 1220
ApoI RAATTY 2 cut(s) 627, 979
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 6 cut(s) 116, 151, 487, 833, 1056, 1122
AsuII TTCGAA 1 cut(s) 993
AvaII GGWCC 1 cut(s) 962
BaeGI GKGCMC 1 cut(s) 418
BalI TGGCCA 3 cut(s) 96, 802, 887
BanI GGYRCC 3 cut(s) 571, 1118, 1211
BbvI GCAGC 3 cut(s) 102, 835, 1232
BccI CCATC 5 cut(s) 761, 811, 995, 1069, 1078
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 611, 960
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 5 cut(s) 381, 428, 635, 690, 1288
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 3 cut(s) 116, 849, 1221
BlsI GCNGC 3 cut(s) 117, 850, 1222
Bme1390I CCNGG 2 cut(s) 611, 960
Bme18I GGWCC 1 cut(s) 962
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 3 cut(s) 573, 1120, 1213
BmrFI CCNGG 2 cut(s) 611, 960
BmsI GCATC 3 cut(s) 352, 721, 805
Bpu10I CCTNAGC 1 cut(s) 912
Bpu14I TTCGAA 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 708, 1120
BsaBI GATNNNNATC 1 cut(s) 1039
BsaHI GRCGYC 1 cut(s) 921
BsaJI CCNNGG 3 cut(s) 610, 888, 1215
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 391, 503, 809
Bse118I RCCGGY 2 cut(s) 391, 659
Bse1I ACTGG 3 cut(s) 528, 1002, 1120
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 1039
BseBI CCWGG 2 cut(s) 611, 960
BseDI CCNNGG 3 cut(s) 610, 888, 1215
BseGI GGATG 3 cut(s) 820, 1006, 1166
BseJI GATNNNNATC 1 cut(s) 1039
BseLI CCNNNNNNNGG 4 cut(s) 289, 391, 503, 809
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 1176
BseNI ACTGG 3 cut(s) 528, 1002, 1120
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 3 cut(s) 102, 835, 1232
BseYI CCCAGC 2 cut(s) 253, 423
BshFI GGCC 6 cut(s) 96, 282, 395, 432, 802, 887
BshNI GGYRCC 3 cut(s) 571, 1118, 1211
BsiSI CCGG 2 cut(s) 392, 660
BslI CCNNNNNNNGG 4 cut(s) 289, 391, 503, 809
BsmAI GTCTC 1 cut(s) 785
BsmI GAATGC 3 cut(s) 203, 405, 850
BsnI GGCC 6 cut(s) 96, 282, 395, 432, 802, 887
Bsp119I TTCGAA 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 418
Bsp1407I TGTACA 1 cut(s) 1242
Bsp143I GATC 4 cut(s) 477, 582, 1034, 1284
BspACI CCGC 2 cut(s) 321, 494
BspANI GGCC 6 cut(s) 96, 282, 395, 432, 802, 887
BspCNI CTCAG 1 cut(s) 1177
BspLI GGNNCC 3 cut(s) 573, 1120, 1213
BspPI GGATC 2 cut(s) 590, 1042
BspT104I TTCGAA 1 cut(s) 993
BspT107I GGYRCC 3 cut(s) 571, 1118, 1211
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 2 cut(s) 391, 659
BsrGI TGTACA 1 cut(s) 1242
BsrI ACTGG 3 cut(s) 528, 1002, 1120
BssAI RCCGGY 2 cut(s) 391, 659
BssECI CCNNGG 3 cut(s) 610, 888, 1215
BssMI GATC 4 cut(s) 477, 582, 1034, 1284
BssNI GRCGYC 1 cut(s) 921
BssT1I CCWWGG 2 cut(s) 888, 1215
Bst2UI CCWGG 2 cut(s) 611, 960
Bst4CI ACNGT 2 cut(s) 238, 552
Bst6I CTCTTC 1 cut(s) 869
BstACI GRCGYC 1 cut(s) 921
BstAUI TGTACA 1 cut(s) 1242
BstBI TTCGAA 1 cut(s) 993
BstC8I GCNNGC 2 cut(s) 280, 505
BstDEI CTNAG 2 cut(s) 912, 1185
BstF5I GGATG 3 cut(s) 820, 1006, 1166
BstKTI GATC 4 cut(s) 480, 585, 1037, 1287
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 4 cut(s) 477, 582, 1034, 1284
BstMWI GCNNNNNNNGC 3 cut(s) 124, 768, 1220
BstNI CCWGG 2 cut(s) 611, 960
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 2 cut(s) 609, 958
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 3 cut(s) 102, 835, 1232
BsuRI GGCC 6 cut(s) 96, 282, 395, 432, 802, 887
BtgZI GCGATG 2 cut(s) 441, 1056
BtsCI GGATG 3 cut(s) 820, 1006, 1166
BtsIMutI CAGTG 2 cut(s) 28, 535
Cac8I GCNNGC 2 cut(s) 280, 505
CaiI CAGNNNCTG 1 cut(s) 556
Cfr10I RCCGGY 2 cut(s) 391, 659
Cfr13I GGNCC 1 cut(s) 962
Csp6I GTAC 3 cut(s) 389, 897, 1243
CviAII CATG 3 cut(s) 65, 397, 712
CviQI GTAC 3 cut(s) 389, 897, 1243
DdeI CTNAG 2 cut(s) 912, 1185
DpnI GATC 4 cut(s) 479, 584, 1036, 1286
DpnII GATC 4 cut(s) 477, 582, 1034, 1284
EaeI YGGCCR 4 cut(s) 94, 393, 800, 885
Eam1104I CTCTTC 1 cut(s) 869
EarI CTCTTC 1 cut(s) 869
EciI GGCGGA 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 888, 1215
Eco147I AGGCCT 2 cut(s) 282, 432
Eco47I GGWCC 1 cut(s) 962
Eco57I CTGAAG 1 cut(s) 1083
EcoRII CCWGG 2 cut(s) 609, 958
EcoT14I CCWWGG 2 cut(s) 888, 1215
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 2 cut(s) 888, 1215
FaeI CATG 3 cut(s) 68, 400, 715
FalI AAGNNNNNCTT 6 cut(s) 267, 299, 299, 331, 402, 434
FatI CATG 3 cut(s) 64, 396, 711
FauI CCCGC 1 cut(s) 328
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 3 cut(s) 116, 849, 1221
FokI GGATG 3 cut(s) 827, 1013, 1153
Fsp4HI GCNGC 3 cut(s) 116, 849, 1221
FspBI CTAG 5 cut(s) 381, 428, 635, 690, 1288
GluI GCNGC 3 cut(s) 116, 849, 1221
GsaI CCCAGC 2 cut(s) 257, 427
HaeIII GGCC 6 cut(s) 96, 282, 395, 432, 802, 887
HapII CCGG 2 cut(s) 392, 660
Hin1I GRCGYC 1 cut(s) 921
Hin1II CATG 3 cut(s) 68, 400, 715
HindIII AAGCTT 2 cut(s) 914, 1234
HinfI GANTC 4 cut(s) 18, 171, 437, 485
HpaII CCGG 2 cut(s) 392, 660
HphI GGTGA 6 cut(s) 116, 151, 487, 833, 1056, 1122
Hpy166II GTNNAC 4 cut(s) 59, 136, 899, 1243
Hpy188I TCNGA 2 cut(s) 274, 973
Hpy188III TCNNGA 3 cut(s) 635, 1032, 1184
Hpy8I GTNNAC 4 cut(s) 59, 136, 899, 1243
HpyAV CCTTC 4 cut(s) 293, 507, 887, 1276
HpyCH4III ACNGT 2 cut(s) 238, 552
HpyCH4IV ACGT 1 cut(s) 921
HpyCH4V TGCA 7 cut(s) 203, 365, 590, 605, 700, 734, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 768, 1220
HpyF3I CTNAG 2 cut(s) 912, 1185
HpySE526I ACGT 1 cut(s) 921
Hsp92I GRCGYC 1 cut(s) 921
Hsp92II CATG 3 cut(s) 68, 400, 715
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 4 cut(s) 477, 582, 1034, 1284
Lsp1109I GCAGC 3 cut(s) 102, 835, 1232
LweI GCATC 3 cut(s) 352, 721, 805
MaeI CTAG 5 cut(s) 381, 428, 635, 690, 1288
MaeII ACGT 1 cut(s) 921
MaeIII GTNAC 8 cut(s) 104, 232, 537, 546, 676, 736, 784, 1176
MalI GATC 4 cut(s) 479, 584, 1036, 1286
MboI GATC 4 cut(s) 477, 582, 1034, 1284
MboII GAAGA 4 cut(s) 26, 27, 29, 886
MfeI CAATTG 2 cut(s) 542, 881
MhlI GDGCHC 1 cut(s) 418
MlsI TGGCCA 3 cut(s) 96, 802, 887
MluNI TGGCCA 3 cut(s) 96, 802, 887
MlyI GAGTC 2 cut(s) 431, 494
Mox20I TGGCCA 3 cut(s) 96, 802, 887
Mph1103I ATGCAT 1 cut(s) 592
MscI TGGCCA 3 cut(s) 96, 802, 887
MseI TTAA 2 cut(s) 197, 263
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 3 cut(s) 96, 802, 887
MspI CCGG 2 cut(s) 392, 660
MspR9I CCNGG 2 cut(s) 611, 960
MunI CAATTG 2 cut(s) 542, 881
Mva1269I GAATGC 3 cut(s) 203, 405, 850
MvaI CCWGG 2 cut(s) 611, 960
MwoI GCNNNNNNNGC 3 cut(s) 124, 768, 1220
NdeII GATC 4 cut(s) 477, 582, 1034, 1284
NlaIII CATG 3 cut(s) 68, 400, 715
NlaIV GGNNCC 3 cut(s) 573, 1120, 1213
NmeAIII GCCGAG 1 cut(s) 1121
NmuCI GTSAC 7 cut(s) 104, 232, 537, 676, 736, 784, 1176
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 1 cut(s) 715
NspV TTCGAA 1 cut(s) 993
PceI AGGCCT 2 cut(s) 282, 432
PciI ACATGT 1 cut(s) 711
PctI GAATGC 3 cut(s) 203, 405, 850
PfeI GAWTC 2 cut(s) 18, 171
PkrI GCNGC 3 cut(s) 117, 850, 1222
PleI GAGTC 2 cut(s) 431, 493
PpsI GAGTC 2 cut(s) 431, 493
PscI ACATGT 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 609, 958
PspFI CCCAGC 2 cut(s) 253, 423
PspGI CCWGG 2 cut(s) 609, 958
PspN4I GGNNCC 3 cut(s) 573, 1120, 1213
PspPI GGNCC 1 cut(s) 962
PsrI GAACNNNNNNTAC 2 cut(s) 646, 678
PstNI CAGNNNCTG 1 cut(s) 556
RsaI GTAC 3 cut(s) 390, 898, 1244
RsaNI GTAC 3 cut(s) 389, 897, 1243
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 197, 263
SatI GCNGC 3 cut(s) 116, 849, 1221
Sau3AI GATC 4 cut(s) 477, 582, 1034, 1284
Sau96I GGNCC 1 cut(s) 962
SchI GAGTC 2 cut(s) 431, 494
ScrFI CCNGG 2 cut(s) 611, 960
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 3 cut(s) 352, 721, 805
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 993
SinI GGWCC 1 cut(s) 962
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 723, 1135
SmoI CTYRAG 2 cut(s) 723, 1135
SseBI AGGCCT 2 cut(s) 282, 432
SsiI CCGC 2 cut(s) 321, 494
SspI AATATT 2 cut(s) 195, 220
SspMI CTAG 5 cut(s) 381, 428, 635, 690, 1288
StuI AGGCCT 2 cut(s) 282, 432
StyD4I CCNGG 2 cut(s) 609, 958
StyI CCWWGG 2 cut(s) 888, 1215
TaaI ACNGT 2 cut(s) 238, 552
TaiI ACGT 1 cut(s) 924
TaqI TCGA 3 cut(s) 620, 765, 993
TatI WGTACW 1 cut(s) 1242
TfiI GAWTC 2 cut(s) 18, 171
Tru1I TTAA 2 cut(s) 197, 263
Tru9I TTAA 2 cut(s) 197, 263
TscAI CASTG 2 cut(s) 28, 535
TseFI GTSAC 7 cut(s) 104, 232, 537, 676, 736, 784, 1176
TseI GCWGC 3 cut(s) 115, 848, 1220
Tsp45I GTSAC 7 cut(s) 104, 232, 537, 676, 736, 784, 1176
TspDTI ATGAA 4 cut(s) 63, 261, 654, 720
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 2 cut(s) 28, 535
VpaK11BI GGWCC 1 cut(s) 962
XapI RAATTY 2 cut(s) 627, 979
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XspI CTAG 5 cut(s) 381, 428, 635, 690, 1288
ZraI GACGTC 1 cut(s) 922
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.