Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Forward (+)

84395975 .. 84398021

Gene Structure 2047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAAATTTCTAGCAGAATTACCAGAATCAATGCTTTTCTTCTCTGTTTGCTCTGTATCTCAGAATTACAAGGAGTTACATCACTTGGCATCAACTATGGCCAGCTCGGCAACAATTTGCTAGAACCAGAGAAAGTCCTAGACCTCTTAAGCTCCCTCAAGGTCACAAAAGCAAGAATTTACGACACGAATCCTCAAGTACTAACAGCATTTGCCAATTCCGGCGTTGAGCTAATGGTGACAATCGAAAACGCAATGTTAGGCCAGTTGATGAACCCCCAAGCAGCCCTTCAATGGGTTAACGCCCACATCAAGCCTTATGTCCCCGCCACGAAAATATCCAGCATTGCGGTAGGGAATGAGGTCTTCACCGACGATGACACAACCGTGCTGCTAGATAATCTTGTCCCAGCCATGGTCAGCATTCAAGCGGCTCTAACTCAGTTAGGCCTTGACTCAAACATTAAGGTCTCAACACCTTGCTCTTTAGCAGTGCTTGAAGAATCCTACCCGCCTTCCGCTGGGAGCTTCAAAACTGAAGTAGCTGGTGTCATGTCACAATTGTTACAGTTTTTGCAAACCACAAAGGCACCTTTTTGGATCAATGCCTATCCCTACTTTGCATACAAAGATAGCCCGAATAAAATTTCTCTAGACTATGTCCTCTTCAATCCCAATTCGGGCATGATTGACCCTTATACCAAGTTGCACTATGACAATATGTTGTATGCTCAAGTAGATGCAGCCATTTTCGCTATGGCCCGGTTGGGGTTCAATGGGATCGAGGTCAAGGTTTCGGAGACGGGGTGGCCATCCAAGGGCGATGCCAATGAAATCGGTGCAACTTTGCAGAATGCTGCTATTTACAATAGAAACTTGCTGAGAAGGCAATTGGCAAATGAAGGCACACCTTTGAGGCCTAGAATAAGGCTTGAAATCTATGTTTTTGCTCTTTTCAATGAGAACATGAAGCCTGGACCTACTTCAGAGAGGAATTACGGTCTATTTCAACCTGATGGAACTATGGCTTACAATGTGGGATTGTCTGCCTTGTCAACTACTTCAACTACCTCATCAACCTCGACAGCTTCAATTTCTGATCTCACTTCCTCTGCCACAAAGCCAACAGCAATGGACTTTCATCAAAGCTGGGTGAGCTGCATCTTTGTTTGTGTGGTGACCTTCCAAGTTTATATGAGAAGACCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

403

Amino Acids

44.23

Weight (kDa)

5.36

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 346	9.4e-81	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AciI	CCGC	5 cut(s)	327, 350, 431, 512, 519
AclWI	GGATC	2 cut(s)	608, 788
AcoI	YGGCCR	2 cut(s)	100, 809
AcsI	RAATTY	3 cut(s)	6, 177, 645
AcuI	CTGAAG	2 cut(s)	558, 969
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 768, 818
AflII	CTTAAG	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	973
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	8 cut(s)	106, 153, 232, 528, 545, 1088, 1149, 1158
AluI	AGCT	8 cut(s)	106, 153, 232, 528, 545, 1088, 1149, 1158
Alw26I	GTCTC	2 cut(s)	475, 794
AlwI	GGATC	2 cut(s)	608, 788
AoxI	GGCC	6 cut(s)	100, 262, 448, 759, 809, 917
ApeKI	GCWGC	5 cut(s)	284, 391, 743, 857, 1158
ApoI	RAATTY	3 cut(s)	6, 177, 645
AspS9I	GGNCC	2 cut(s)	760, 977
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	4 cut(s)	250, 361, 1165, 1189
AvaII	GGWCC	1 cut(s)	977
BalI	TGGCCA	2 cut(s)	102, 811
BanI	GGYRCC	1 cut(s)	589
BbsI	GAAGAC	2 cut(s)	358, 1207
BbvI	GCAGC	5 cut(s)	296, 378, 755, 844, 1145
BccI	CCATC	2 cut(s)	820, 1010
BciT130I	CCWGG	1 cut(s)	975
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	475, 794
BfaI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
BfrI	CTTAAG	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1159
BlsI	GCNGC	6 cut(s)	286, 393, 433, 745, 859, 1160
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	763, 975
Bme18I	GGWCC	1 cut(s)	977
BmgT120I	GGNCC	2 cut(s)	760, 977
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	2 cut(s)	763, 975
BmsI	GCATC	4 cut(s)	99, 730, 814, 1170
BpiI	GAAGAC	2 cut(s)	358, 1207
BpuEI	CTTGAG	3 cut(s)	143, 180, 717
BpuMI	CCSGG	1 cut(s)	763
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	414, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 768, 818
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	3 cut(s)	261, 345, 1137
BseBI	CCWGG	1 cut(s)	975
BseDI	CCNNGG	2 cut(s)	414, 816
BseGI	GGATG	1 cut(s)	812
BseLI	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 768, 818
BseMI	GCAATG	3 cut(s)	261, 345, 1137
BseMII	CTCAG	3 cut(s)	75, 455, 872
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	5 cut(s)	296, 378, 755, 844, 1145
BseYI	CCCAGC	3 cut(s)	409, 521, 1149
BshFI	GGCC	6 cut(s)	102, 264, 450, 761, 811, 919
BshNI	GGYRCC	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	222, 763
BslFI	GGGAC	2 cut(s)	308, 392
BslI	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 768, 818
BsmAI	GTCTC	2 cut(s)	475, 794
BsmBI	CGTCTC	1 cut(s)	794
BsmFI	GGGAC	2 cut(s)	308, 392
BsmI	GAATGC	2 cut(s)	423, 859
BsnI	GGCC	6 cut(s)	102, 264, 450, 761, 811, 919
Bso31I	GGTCTC	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	600, 780, 1099
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	5 cut(s)	327, 350, 431, 512, 519
BspANI	GGCC	6 cut(s)	102, 264, 450, 761, 811, 919
BspCNI	CTCAG	3 cut(s)	74, 454, 873
BspLI	GGNNCC	1 cut(s)	591
BspPI	GGATC	2 cut(s)	608, 788
BspT107I	GGYRCC	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	3 cut(s)	261, 345, 1137
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	414, 816
BssMI	GATC	3 cut(s)	600, 780, 1099
BssT1I	CCWWGG	2 cut(s)	414, 816
Bst2UI	CCWGG	1 cut(s)	975
Bst4CI	ACNGT	3 cut(s)	388, 570, 1001
Bst6I	CTCTTC	1 cut(s)	671
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	61, 441, 881
BstDSI	CCRYGG	1 cut(s)	414
BstEII	GGTNACC	1 cut(s)	1177
BstF5I	GGATG	1 cut(s)	812
BstKTI	GATC	3 cut(s)	603, 783, 1102
BstMAI	GTCTC	2 cut(s)	475, 794
BstMBI	GATC	3 cut(s)	600, 780, 1099
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 752, 886, 1155
BstNI	CCWGG	1 cut(s)	975
BstPI	GGTNACC	1 cut(s)	1177
BstSCI	CCNGG	2 cut(s)	761, 973
BstV1I	GCAGC	5 cut(s)	296, 378, 755, 844, 1145
BstV2I	GAAGAC	2 cut(s)	358, 1207
BsuRI	GGCC	6 cut(s)	102, 264, 450, 761, 811, 919
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	837
BtsCI	GGATG	1 cut(s)	812
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	760, 977
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	4 cut(s)	415, 553, 685, 967
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	3 cut(s)	61, 441, 881
DpnI	GATC	3 cut(s)	602, 782, 1101
DpnII	GATC	3 cut(s)	600, 780, 1099
EaeI	YGGCCR	2 cut(s)	100, 809
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
Eco130I	CCWWGG	2 cut(s)	414, 816
Eco147I	AGGCCT	2 cut(s)	450, 919
Eco31I	GGTCTC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	977
Eco57I	CTGAAG	2 cut(s)	558, 969
Eco91I	GGTNACC	1 cut(s)	1177
EcoO65I	GGTNACC	1 cut(s)	1177
EcoRII	CCWGG	1 cut(s)	973
EcoT14I	CCWWGG	2 cut(s)	414, 816
ErhI	CCWWGG	2 cut(s)	414, 816
Esp3I	CGTCTC	1 cut(s)	794
FaeI	CATG	4 cut(s)	418, 556, 688, 970
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	2 cut(s)	308, 392
FatI	CATG	4 cut(s)	414, 552, 684, 966
FauI	CCCGC	2 cut(s)	334, 519
Fnu4HI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1159
FokI	GGATG	1 cut(s)	799
Fsp4HI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1159
FspBI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
GluI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1159
GsaI	CCCAGC	3 cut(s)	413, 525, 1153
HaeIII	GGCC	6 cut(s)	102, 264, 450, 761, 811, 919
HapII	CCGG	2 cut(s)	222, 763
Hin1II	CATG	4 cut(s)	418, 556, 688, 970
HincII	GTYRAC	2 cut(s)	301, 1056
HindII	GTYRAC	2 cut(s)	301, 1056
HinfI	GANTC	4 cut(s)	27, 190, 455, 503
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	222, 763
HphI	GGTGA	4 cut(s)	250, 361, 1165, 1189
Hpy166II	GTNNAC	2 cut(s)	301, 1056
Hpy188I	TCNGA	4 cut(s)	64, 799, 988, 1099
Hpy188III	TCNNGA	1 cut(s)	653
Hpy8I	GTNNAC	2 cut(s)	301, 1056
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	5 cut(s)	299, 525, 879, 896, 1192
HpyCH4III	ACNGT	3 cut(s)	388, 570, 1001
HpyCH4V	TGCA	7 cut(s)	577, 623, 709, 743, 842, 850, 1161
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 752, 886, 1155
HpyF3I	CTNAG	3 cut(s)	61, 441, 881
Hsp92II	CATG	4 cut(s)	418, 556, 688, 970
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	600, 780, 1099
LmnI	GCTCC	2 cut(s)	158, 525
Lsp1109I	GCAGC	5 cut(s)	296, 378, 755, 844, 1145
LweI	GCATC	4 cut(s)	99, 730, 814, 1170
MaeI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
MaeIII	GTNAC	6 cut(s)	76, 163, 238, 555, 564, 1177
MalI	GATC	3 cut(s)	602, 782, 1101
MboI	GATC	3 cut(s)	600, 780, 1099
MboII	GAAGA	5 cut(s)	32, 358, 512, 658, 1212
MfeI	CAATTG	2 cut(s)	560, 890
MlsI	TGGCCA	2 cut(s)	102, 811
MluNI	TGGCCA	2 cut(s)	102, 811
MlyI	GAGTC	1 cut(s)	449
Mox20I	TGGCCA	2 cut(s)	102, 811
MscI	TGGCCA	2 cut(s)	102, 811
MseI	TTAA	4 cut(s)	149, 300, 465, 1210
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	2 cut(s)	102, 811
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	148
MspI	CCGG	2 cut(s)	222, 763
MspR9I	CCNGG	2 cut(s)	763, 975
MunI	CAATTG	2 cut(s)	560, 890
Mva1269I	GAATGC	2 cut(s)	423, 859
MvaI	CCWGG	1 cut(s)	975
MwoI	GCNNNNNNNGC	4 cut(s)	108, 752, 886, 1155
NciI	CCSGG	1 cut(s)	763
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	3 cut(s)	600, 780, 1099
NlaIII	CATG	4 cut(s)	418, 556, 688, 970
NlaIV	GGNNCC	1 cut(s)	591
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	4 cut(s)	163, 238, 555, 1177
OliI	CACNNNNGTG	1 cut(s)	386
PceI	AGGCCT	2 cut(s)	450, 919
PctI	GAATGC	2 cut(s)	423, 859
PfeI	GAWTC	3 cut(s)	27, 190, 503
PflFI	GACNNNGTC	1 cut(s)	659
PkrI	GCNGC	6 cut(s)	286, 393, 433, 745, 859, 1160
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	973
PspEI	GGTNACC	1 cut(s)	1177
PspFI	CCCAGC	3 cut(s)	409, 521, 1149
PspGI	CCWGG	1 cut(s)	973
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	2 cut(s)	760, 977
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	4 cut(s)	149, 300, 465, 1210
SatI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1159
Sau3AI	GATC	3 cut(s)	600, 780, 1099
Sau96I	GGNCC	2 cut(s)	760, 977
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	763, 975
SfaNI	GCATC	4 cut(s)	99, 730, 814, 1170
SinI	GGWCC	1 cut(s)	977
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	4 cut(s)	148, 158, 195, 732
SmoI	CTYRAG	4 cut(s)	148, 158, 195, 732
SseBI	AGGCCT	2 cut(s)	450, 919
SsiI	CCGC	5 cut(s)	327, 350, 431, 512, 519
SspMI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
StuI	AGGCCT	2 cut(s)	450, 919
StyD4I	CCNGG	2 cut(s)	761, 973
StyI	CCWWGG	2 cut(s)	414, 816
TaaI	ACNGT	3 cut(s)	388, 570, 1001
TaqI	TCGA	3 cut(s)	246, 783, 1082
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	3 cut(s)	27, 190, 503
Tru1I	TTAA	4 cut(s)	149, 300, 465, 1210
Tru9I	TTAA	4 cut(s)	149, 300, 465, 1210
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	4 cut(s)	163, 238, 555, 1177
TseI	GCWGC	5 cut(s)	284, 391, 743, 857, 1158
Tsp45I	GTSAC	4 cut(s)	163, 238, 555, 1177
TspDTI	ATGAA	5 cut(s)	287, 846, 915, 983, 1130
TspRI	CASTG	1 cut(s)	498
Tth111I	GACNNNGTC	1 cut(s)	659
Vha464I	CTTAAG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	977
XapI	RAATTY	3 cut(s)	6, 177, 645
XbaI	TCTAGA	1 cut(s)	652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XspI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.