Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Reverse (-)

10091070 .. 10091974

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG108200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGTCAGCATTCAAGCGGCACTAACTCAGTTAGGCCTTGACTCAAACATTAAGGTCTCAACACCTTGCTCTTTAGCAGTGCTTGAAGAATCCTACCCGCCTTCCGCGGGGAGCTTCAAAACTGAAGTAGCTGGTGTCATGTCACAATTGTTACAGTTTTTGCAAACCACAAAGGCACCTTTTTGGATCAATGCCTATCCCTACTTTGCATACAAAGATAGCCCGAATAAAATTTCTCTAGACTATGTGCTCTTCAATCCCAATTCGGGCATGATTGACCCTTATACCAAGTTGCATTATGACAATATGTTGTATGCTCAAGTAGATGCAGCCATTTTCGCTATGGCGCGGTTGGGGTTCAATGGGATCGAGGTCAAGGTTTCGGAGACGGGGTGGCCATCCAAGGGCGATGCCAATGAAATCGGTGCAACTTTGCAGAATGCTGCTATTTACAATAGAAACTTGCTGAGAAGGCAATTGGAAAATGAAGGCACACCTTTGAGGCCTAGAATGAGGCTTGAAATCTATGTTTTTGCTCTTTTCAATGAGAACATGAAGCCTGGACCAACTTCAGAGAGGAATTACGGTCTATTTCAACCTGATGGAACTATGGCTTACAATGTGGGATTGTCTGCCTTGTCAACTACTTCAACTACCTCATCAACCTCGACAGCTTCAATTTCTGATCTCACTTCCTCTGCCACAAAGCCAACAGCAATGGACTTTCATCAAAGCTGGGTGAGCTGCATCTTTGTTTGTGTGGTGACCTTCCAAGTTTATATGAGAAGACCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

265

Amino Acids

29.34

Weight (kDa)

6.14

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 208	5.9e-55	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	2 cut(s)	107, 349
AciI	CCGC	5 cut(s)	17, 98, 105, 107, 349
AclWI	GGATC	2 cut(s)	194, 374
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	231
AcuI	CTGAAG	2 cut(s)	144, 555
AfiI	CCNNNNNNNGG	3 cut(s)	107, 266, 404
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	5 cut(s)	114, 131, 674, 735, 744
AluI	AGCT	5 cut(s)	114, 131, 674, 735, 744
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	61, 380
AlwI	GGATC	2 cut(s)	194, 374
AoxI	GGCC	3 cut(s)	34, 395, 503
ApeKI	GCWGC	3 cut(s)	329, 443, 744
ApoI	RAATTY	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	2 cut(s)	751, 775
AvaII	GGWCC	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	793
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	341, 430, 731
BccI	CCATC	2 cut(s)	406, 596
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	61, 380
BfaI	CTAG	2 cut(s)	239, 507
BisI	GCNGC	4 cut(s)	18, 330, 444, 745
BlsI	GCNGC	4 cut(s)	19, 331, 445, 746
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	3 cut(s)	316, 400, 756
BpiI	GAAGAC	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	105, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 266, 404
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	105, 402
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	3 cut(s)	107, 266, 404
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	41, 458
BseXI	GCAGC	3 cut(s)	341, 430, 731
BseYI	CCCAGC	1 cut(s)	735
Bsh1236I	CGCG	2 cut(s)	107, 349
BshFI	GGCC	3 cut(s)	36, 397, 505
BshNI	GGYRCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	107, 266, 404
BsmAI	GTCTC	2 cut(s)	61, 380
BsmBI	CGTCTC	1 cut(s)	380
BsmI	GAATGC	2 cut(s)	9, 445
BsnI	GGCC	3 cut(s)	36, 397, 505
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	186, 366, 685
BspACI	CCGC	5 cut(s)	17, 98, 105, 107, 349
BspANI	GGCC	3 cut(s)	36, 397, 505
BspCNI	CTCAG	2 cut(s)	40, 459
BspFNI	CGCG	2 cut(s)	107, 349
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	194, 374
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	723
BssECI	CCNNGG	2 cut(s)	105, 402
BssMI	GATC	3 cut(s)	186, 366, 685
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	156, 587
Bst6I	CTCTTC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	27, 467
BstDSI	CCRYGG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	763
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	2 cut(s)	107, 349
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	189, 369, 688
BstMAI	GTCTC	2 cut(s)	61, 380
BstMBI	GATC	3 cut(s)	186, 366, 685
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 472, 741
BstNI	CCWGG	1 cut(s)	561
BstPI	GGTNACC	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	559
BstUI	CGCG	2 cut(s)	107, 349
BstV1I	GCAGC	3 cut(s)	341, 430, 731
BstV2I	GAAGAC	1 cut(s)	793
BsuRI	GGCC	3 cut(s)	36, 397, 505
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	398
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	563
Cfr42I	CCGCGG	1 cut(s)	108
CviAII	CATG	3 cut(s)	139, 271, 553
DdeI	CTNAG	2 cut(s)	27, 467
DpnI	GATC	3 cut(s)	188, 368, 687
DpnII	GATC	3 cut(s)	186, 366, 685
EaeI	YGGCCR	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	402
Eco147I	AGGCCT	2 cut(s)	36, 505
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	144, 555
Eco91I	GGTNACC	1 cut(s)	763
EcoO65I	GGTNACC	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	3 cut(s)	142, 274, 556
FatI	CATG	3 cut(s)	138, 270, 552
FauI	CCCGC	2 cut(s)	100, 105
Fnu4HI	GCNGC	4 cut(s)	18, 330, 444, 745
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	4 cut(s)	18, 330, 444, 745
FspBI	CTAG	2 cut(s)	239, 507
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	4 cut(s)	18, 330, 444, 745
GsaI	CCCAGC	1 cut(s)	739
HaeIII	GGCC	3 cut(s)	36, 397, 505
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	142, 274, 556
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	2 cut(s)	41, 89
HphI	GGTGA	2 cut(s)	751, 775
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	3 cut(s)	385, 574, 685
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	4 cut(s)	111, 465, 482, 778
HpyCH4III	ACNGT	2 cut(s)	156, 587
HpyCH4V	TGCA	7 cut(s)	163, 209, 295, 329, 428, 436, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 472, 741
HpyF3I	CTNAG	2 cut(s)	27, 467
Hsp92II	CATG	3 cut(s)	142, 274, 556
HspAI	GCGC	1 cut(s)	347
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	186, 366, 685
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	5 cut(s)	117, 546, 573, 612, 721
Lsp1109I	GCAGC	3 cut(s)	341, 430, 731
LweI	GCATC	3 cut(s)	316, 400, 756
MaeI	CTAG	2 cut(s)	239, 507
MaeIII	GTNAC	3 cut(s)	141, 150, 763
MalI	GATC	3 cut(s)	188, 368, 687
MboI	GATC	3 cut(s)	186, 366, 685
MboII	GAAGA	3 cut(s)	98, 244, 798
MfeI	CAATTG	2 cut(s)	146, 476
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	397
MluCI	AATT	6 cut(s)	146, 231, 262, 476, 580, 678
MluNI	TGGCCA	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	7 cut(s)	364, 495, 507, 570, 667, 676, 706
Mox20I	TGGCCA	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	397
MseI	TTAA	2 cut(s)	51, 796
Msp20I	TGGCCA	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	561
MunI	CAATTG	2 cut(s)	146, 476
Mva1269I	GAATGC	2 cut(s)	9, 445
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	2 cut(s)	107, 349
MwoI	GCNNNNNNNGC	3 cut(s)	338, 472, 741
NdeII	GATC	3 cut(s)	186, 366, 685
NlaIII	CATG	3 cut(s)	142, 274, 556
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	141, 763
PceI	AGGCCT	2 cut(s)	36, 505
PciSI	GCTCTTC	1 cut(s)	257
PctI	GAATGC	2 cut(s)	9, 445
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	19, 331, 445, 746
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	763
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	563
SacII	CCGCGG	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	51, 796
SatI	GCNGC	4 cut(s)	18, 330, 444, 745
Sau3AI	GATC	3 cut(s)	186, 366, 685
Sau96I	GGNCC	1 cut(s)	563
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	3 cut(s)	316, 400, 756
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	6 cut(s)	146, 231, 262, 476, 580, 678
SseBI	AGGCCT	2 cut(s)	36, 505
SsiI	CCGC	5 cut(s)	17, 98, 105, 107, 349
SspMI	CTAG	2 cut(s)	239, 507
StuI	AGGCCT	2 cut(s)	36, 505
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	156, 587
TaqI	TCGA	2 cut(s)	369, 668
TasI	AATT	6 cut(s)	146, 231, 262, 476, 580, 678
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	51, 796
Tru9I	TTAA	2 cut(s)	51, 796
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	141, 763
TseI	GCWGC	3 cut(s)	329, 443, 744
Tsp45I	GTSAC	2 cut(s)	141, 763
TspDTI	ATGAA	4 cut(s)	432, 501, 569, 716
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	1 cut(s)	231
XbaI	TCTAGA	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XspI	CTAG	2 cut(s)	239, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.