Rw0G011480

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00507
OG0002223
Physical Location & Seq
Reverse (-)
3597 .. 5058
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011480.1

Sequence Viewer

Length: 1149 bp
ATGCGTTCTGCTTGTGAGATTGAGAAAACCAAAAAAGTTCTCCATGGCATGGCAACGTGTACCAGAATCAGTGCTGCTTTTCTTCTTCTATGTTGGTTGATATGTTTCTCAGGGTTTGGTTTCGTACAAAGAGTTGCATCGCTTGGTATCAACTTCGGCCAACTCGGCGACAATTTGCTACAACCACAGCAAGTTATGAGCCTCTTAAGGTCCAACAATATCACAAAAACAAGAATTTACGACACCAATCCGCAGATACCAACTGCATTCGCAAATTCGGATATTGAGCTCATTGTGACAGTGGAAAACGAAATGCTAAGCCAATTAACCAACCCCCAAGCAGCCCTTCAATGGGTTACTACACACATCAAGCCTTATTTTCTCTCCACGAAAATCACAGGCATTATGATAGGGAACGAGATTGATGCAACGGATTTGCTAGCTAGCCTTGTACCGGCCGTGTCCAGCATTCAAAAGGCCCTATCTCAGTTAGGTCTTGATTCACACATGAAGGTGTCATCGCCTTTTTCTTTTTCGGTGATGGAAGAGTCTTATCCACCTTCTGCTGGCAGTTTCAAAAGCGAGGTCTCGGGTGTGATGTCACAATTGTTACAGTTTTTGTCAAGCACAAAGGCGCCGTTTTGGATCAATGCATATCCTTACTTTGCGTACAAGGGCAACTCGAAAGATATTCCTCTAGACTATGTGCTTTTCAGTAATGCCGTAGATGCAGTCACTTATGCCATTTCTAAATTGGGCTTCGATGGCATAGAGGTTAGGTTTGGAGAATGCTGCTATATACAATGGGAACTTGTTGAAGAGGTAATTGGCCAAGGTACACCTTTGAAGCCTACGCCTGACGTCTATAATGCGAGCTTGACTGGATCCTCATCTGCCTCCACTTCAACTCCAAACTCAACTGATGCCTCATCAACCCCAACCCCAACCCCATCTAACCTATCAGAACCACCAACCTCAGCTACGAATTCCACTGATGCCTCATCACTCCCACCCCCAAGCCTATCAGAACCACCAACCTCATCACTTCCTGAGATCAATATGACCTATTCCTCTGGTGCCAAGACAGCATCATTGGGAAGCTGGGTGTACTGGATCATGTTTCTTCGTGTGCTAACCTTCCGAGTTTGA

Protein Analysis

382

Amino Acids

41.44

Weight (kDa)

5.08

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 48 - 245 1.7e-42 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 864
AccB1I GGYRCC 2 cut(s) 634, 1076
AccB7I CCANNNNNTGG 1 cut(s) 49
AciI CCGC 1 cut(s) 251
AclWI GGATC 4 cut(s) 653, 879, 892, 1121
AcoI YGGCCR 3 cut(s) 157, 456, 829
AcsI RAATTY 3 cut(s) 234, 274, 985
AcyI GRCGYC 2 cut(s) 635, 861
AfaI GTAC 6 cut(s) 61, 126, 453, 671, 838, 1109
AfiI CCNNNNNNNGG 5 cut(s) 49, 351, 352, 454, 566
AflII CTTAAG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 6 cut(s) 350, 473, 577, 818, 847, 906
AjuI GAANNNNNNNTTGG 4 cut(s) 330, 362, 810, 842
AluBI AGCT 5 cut(s) 289, 443, 876, 980, 1101
AluI AGCT 5 cut(s) 289, 443, 876, 980, 1101
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 4 cut(s) 653, 879, 892, 1121
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 4 cut(s) 157, 456, 477, 829
ApeKI GCWGC 3 cut(s) 74, 341, 792
ApoI RAATTY 3 cut(s) 234, 274, 985
ArsI GACNNNNNNTTYG 2 cut(s) 570, 602
AspLEI GCGC 1 cut(s) 637
AspS9I GGNCC 2 cut(s) 210, 478
AsuHPI GGTGA 1 cut(s) 550
AsuNHI GCTAGC 2 cut(s) 439, 443
AvaI CYCGRG 1 cut(s) 589
AvaII GGWCC 1 cut(s) 210
BalI TGGCCA 1 cut(s) 831
BamHI GGATCC 1 cut(s) 884
BanI GGYRCC 2 cut(s) 634, 1076
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 291
BbvCI CCTCAGC 1 cut(s) 976
BbvI GCAGC 3 cut(s) 61, 353, 779
BccI CCATC 3 cut(s) 535, 758, 958
BceAI ACGGC 3 cut(s) 443, 622, 707
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 3 cut(s) 440, 444, 698
BfoI RGCGCY 1 cut(s) 638
BfrI CTTAAG 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 165
BisI GCNGC 3 cut(s) 75, 342, 793
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 3 cut(s) 76, 343, 794
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 589
BmgT120I GGNCC 2 cut(s) 210, 478
BmiI GGNNCC 3 cut(s) 636, 886, 1078
BmsI GCATC 6 cut(s) 146, 415, 718, 913, 985, 1097
BmtI GCTAGC 2 cut(s) 443, 447
Bpu10I CCTNAGC 1 cut(s) 976
Bpu1102I GCTNAGC 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 889
BsaHI GRCGYC 2 cut(s) 635, 861
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 2 cut(s) 43, 832
BsaXI ACNNNNNCTCC 2 cut(s) 892, 922
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 351, 352, 454, 566
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 2 cut(s) 886, 1115
Bse8I GATNNNNATC 1 cut(s) 889
BseDI CCNNGG 2 cut(s) 43, 832
BseJI GATNNNNATC 1 cut(s) 889
BseLI CCNNNNNNNGG 5 cut(s) 49, 351, 352, 454, 566
BseMII CTCAG 4 cut(s) 123, 500, 990, 1041
BseNI ACTGG 2 cut(s) 886, 1115
BseX3I CGGCCG 1 cut(s) 456
BseXI GCAGC 3 cut(s) 61, 353, 779
BseYI CCCAGC 1 cut(s) 1101
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 4 cut(s) 159, 458, 479, 831
BshNI GGYRCC 2 cut(s) 634, 1076
BsiEI CGRYCG 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 589
BsiSI CCGG 1 cut(s) 455
BslI CCNNNNNNNGG 5 cut(s) 49, 351, 352, 454, 566
BsmAI GTCTC 1 cut(s) 592
BsmI GAATGC 3 cut(s) 266, 468, 794
BsnI GGCC 4 cut(s) 159, 458, 479, 831
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 4 cut(s) 645, 884, 1053, 1113
Bsp1720I GCTNAGC 1 cut(s) 317
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 1 cut(s) 251
BspANI GGCC 4 cut(s) 159, 458, 479, 831
BspCNI CTCAG 4 cut(s) 122, 499, 989, 1042
BspLI GGNNCC 3 cut(s) 636, 886, 1078
BspOI GCTAGC 2 cut(s) 443, 447
BspPI GGATC 4 cut(s) 653, 879, 892, 1121
BspT107I GGYRCC 2 cut(s) 634, 1076
BspTI CTTAAG 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 592
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 2 cut(s) 886, 1115
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 43, 832
BssMI GATC 4 cut(s) 645, 884, 1053, 1113
BssNI GRCGYC 2 cut(s) 635, 861
BssT1I CCWWGG 2 cut(s) 43, 832
Bst4CI ACNGT 2 cut(s) 301, 615
Bst6I CTCTTC 2 cut(s) 540, 813
BstACI GRCGYC 2 cut(s) 635, 861
BstAFI CTTAAG 1 cut(s) 205
BstC8I GCNNGC 4 cut(s) 441, 445, 568, 874
BstDEI CTNAG 5 cut(s) 109, 317, 486, 976, 1050
BstDSI CCRYGG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 638
BstHHI GCGC 1 cut(s) 637
BstKTI GATC 4 cut(s) 648, 887, 1056, 1116
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 4 cut(s) 645, 884, 1053, 1113
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 4 cut(s) 165, 728, 765, 1085
BstV1I GCAGC 3 cut(s) 61, 353, 779
BstX2I RGATCY 1 cut(s) 884
BstYI RGATCY 1 cut(s) 884
BstZI CGGCCG 1 cut(s) 456
BsuRI GGCC 4 cut(s) 159, 458, 479, 831
BtgI CCRYGG 1 cut(s) 43
BtgZI GCGATG 2 cut(s) 123, 504
BtsIMutI CAGTG 3 cut(s) 76, 306, 990
Cac8I GCNNGC 4 cut(s) 441, 445, 568, 874
CfoI GCGC 1 cut(s) 637
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 210, 478
Csp6I GTAC 6 cut(s) 60, 125, 452, 670, 837, 1108
CviAII CATG 4 cut(s) 44, 49, 508, 1117
CviQI GTAC 6 cut(s) 60, 125, 452, 670, 837, 1108
DdeI CTNAG 5 cut(s) 109, 317, 486, 976, 1050
DinI GGCGCC 1 cut(s) 636
DpnI GATC 4 cut(s) 647, 886, 1055, 1115
DpnII GATC 4 cut(s) 645, 884, 1053, 1113
EaeI YGGCCR 3 cut(s) 157, 456, 829
EagI CGGCCG 1 cut(s) 456
Eam1104I CTCTTC 2 cut(s) 540, 813
EarI CTCTTC 2 cut(s) 540, 813
Ecl136II GAGCTC 1 cut(s) 289
EclXI CGGCCG 1 cut(s) 456
Eco130I CCWWGG 2 cut(s) 43, 832
Eco24I GRGCYC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 210
Eco52I CGGCCG 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 589
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 985
EcoT14I CCWWGG 2 cut(s) 43, 832
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 636
EheI GGCGCC 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 43, 832
FaeI CATG 4 cut(s) 47, 52, 511, 1120
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 4 cut(s) 43, 48, 507, 1116
Fnu4HI GCNGC 3 cut(s) 75, 342, 793
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 3 cut(s) 75, 342, 793
FspBI CTAG 3 cut(s) 440, 444, 698
GlaI GCGC 1 cut(s) 636
GluI GCNGC 3 cut(s) 75, 342, 793
GsaI CCCAGC 1 cut(s) 1105
HaeII RGCGCY 1 cut(s) 638
HaeIII GGCC 4 cut(s) 159, 458, 479, 831
HapII CCGG 1 cut(s) 455
HhaI GCGC 1 cut(s) 637
Hin1I GRCGYC 2 cut(s) 635, 861
Hin1II CATG 4 cut(s) 47, 52, 511, 1120
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HinfI GANTC 3 cut(s) 66, 500, 548
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 3 cut(s) 60, 839, 1108
Hpy188I TCNGA 4 cut(s) 280, 964, 1027, 1142
Hpy188III TCNNGA 3 cut(s) 497, 698, 1049
Hpy8I GTNNAC 3 cut(s) 60, 839, 1108
HpyAV CCTTC 4 cut(s) 356, 505, 570, 1147
HpyCH4III ACNGT 2 cut(s) 301, 615
HpyCH4IV ACGT 2 cut(s) 56, 861
HpyCH4V TGCA 5 cut(s) 137, 266, 428, 653, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 728, 765, 1085
HpyF3I CTNAG 5 cut(s) 109, 317, 486, 976, 1050
HpySE526I ACGT 2 cut(s) 56, 861
Hsp92I GRCGYC 2 cut(s) 635, 861
Hsp92II CATG 4 cut(s) 47, 52, 511, 1120
HspAI GCGC 1 cut(s) 635
KasI GGCGCC 1 cut(s) 634
Kzo9I GATC 4 cut(s) 645, 884, 1053, 1113
Lsp1109I GCAGC 3 cut(s) 61, 353, 779
LweI GCATC 6 cut(s) 146, 415, 718, 913, 985, 1097
MaeI CTAG 3 cut(s) 440, 444, 698
MaeII ACGT 2 cut(s) 56, 861
MaeIII GTNAC 5 cut(s) 295, 355, 600, 609, 733
MalI GATC 4 cut(s) 647, 886, 1055, 1115
MboI GATC 4 cut(s) 645, 884, 1053, 1113
MboII GAAGA 5 cut(s) 74, 77, 557, 830, 1115
MfeI CAATTG 1 cut(s) 605
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 8 cut(s) 172, 234, 274, 323, 605, 752, 825, 985
MluNI TGGCCA 1 cut(s) 831
Mly113I GGCGCC 1 cut(s) 635
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 237
Mox20I TGGCCA 1 cut(s) 831
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 831
MseI TTAA 2 cut(s) 206, 326
MslI CAYNNNNRTG 1 cut(s) 512
Msp20I TGGCCA 1 cut(s) 831
MspCI CTTAAG 1 cut(s) 205
MspI CCGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 605
Mva1269I GAATGC 3 cut(s) 266, 468, 794
MwoI GCNNNNNNNGC 4 cut(s) 165, 728, 765, 1085
NarI GGCGCC 1 cut(s) 635
NcoI CCATGG 1 cut(s) 43
NdeII GATC 4 cut(s) 645, 884, 1053, 1113
NheI GCTAGC 2 cut(s) 439, 443
NlaIII CATG 4 cut(s) 47, 52, 511, 1120
NlaIV GGNNCC 3 cut(s) 636, 886, 1078
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 3 cut(s) 295, 600, 733
NsiI ATGCAT 1 cut(s) 655
PctI GAATGC 3 cut(s) 266, 468, 794
PfeI GAWTC 2 cut(s) 66, 500
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 3 cut(s) 76, 343, 794
PleI GAGTC 1 cut(s) 556
PluTI GGCGCC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 1101
PspN4I GGNNCC 3 cut(s) 636, 886, 1078
PspPI GGNCC 2 cut(s) 210, 478
PsuI RGATCY 1 cut(s) 884
RsaI GTAC 6 cut(s) 61, 126, 453, 671, 838, 1109
RsaNI GTAC 6 cut(s) 60, 125, 452, 670, 837, 1108
RseI CAYNNNNRTG 1 cut(s) 512
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 206, 326
SatI GCNGC 3 cut(s) 75, 342, 793
Sau3AI GATC 4 cut(s) 645, 884, 1053, 1113
Sau96I GGNCC 2 cut(s) 210, 478
SchI GAGTC 1 cut(s) 557
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 6 cut(s) 146, 415, 718, 913, 985, 1097
SfoI GGCGCC 1 cut(s) 636
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 8 cut(s) 172, 234, 274, 323, 605, 752, 825, 985
SsiI CCGC 1 cut(s) 251
SspDI GGCGCC 1 cut(s) 634
SspMI CTAG 3 cut(s) 440, 444, 698
SstI GAGCTC 1 cut(s) 291
StyI CCWWGG 2 cut(s) 43, 832
TaaI ACNGT 2 cut(s) 301, 615
TaiI ACGT 2 cut(s) 59, 864
TaqI TCGA 2 cut(s) 683, 762
TasI AATT 8 cut(s) 172, 234, 274, 323, 605, 752, 825, 985
TatI WGTACW 1 cut(s) 1107
TfiI GAWTC 2 cut(s) 66, 500
Tru1I TTAA 2 cut(s) 206, 326
Tru9I TTAA 2 cut(s) 206, 326
TscAI CASTG 3 cut(s) 76, 306, 997
TseFI GTSAC 3 cut(s) 295, 600, 733
TseI GCWGC 3 cut(s) 74, 341, 792
Tsp45I GTSAC 3 cut(s) 295, 600, 733
TspDTI ATGAA 1 cut(s) 524
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 3 cut(s) 76, 306, 997
Van91I CCANNNNNTGG 1 cut(s) 49
Vha464I CTTAAG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 3 cut(s) 234, 274, 985
XbaI TCTAGA 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XspI CTAG 3 cut(s) 440, 444, 698
ZraI GACGTC 1 cut(s) 862
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.