Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000120.1

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Forward (+)

12156 .. 13571

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000120.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggaaatttctagcagaattgccagaatcaatgcttttcttctctgtttgctctgtttctcagaattacaaggagttacatcacttggcatcaactatggccaactcggcaacaatttgctagaaccacagaaagtcctagacctcttaagctcccttaaggtcacaaaagcaagaatttacgacacgaatcctcaagtactaacagcatttgccaattccggcgttgagctaatggtgacaatcgaaaacgcaatgttaggccagttgatgaacccccaagcagcccttcaatgggttaacgcccacatcaagccttatgttcccgccacgaaaatatccagcattgcggtagggaatgaggtcttcaccgacgatgacacaaccgtgctgctagataatcttgtcccagccatggtcagcattcaagcggcactaactcagttaggccttgactcaaacattaaggtctcaacaccttgctctttagcagtgcttgaagaatcctacccgccttccgcggggagcttcaaaactgaagtagctggtgtcatgtcacaattgttacagttcttgcaaacaacgaaggcacctttttggatcaatgcctatccctactttgcatacaaagatagcccgaataaaatttctctagactatgtgctcttcaatcccaattcgggcatgattgacccttataccaagttgcactatgacaatatgttgtatgctcaagtagatgcagccattttcgctatggcgcggttggggttcaatgggatcgaggtcaaggtttcggagacggggtggccatccaagggcgatgccaatgaaatcggtgcaactttgcagaatgctgctatttacaatagaaacttgctgaggaggcaattggcaaatgaaggcacacctttgaggcctagaatgaggcttgaaatctatgtttttgctcttttcaatgagaacatgaagcctggaccaacttcagagaggaattacggtctatttcaacctgatggaactatggcttacaatgtgggattgtctgccttgtcaactacttcaactacctcatcaacctcgacagcttcaatttctgatctcacttcctctgccacaaagtcaatggactttcaccaaagctgggtgagctgcatctttgtttctgtggtgaccttccaagtttatatgagaagaccattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

401

Amino Acids

44.05

Weight (kDa)

5.52

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccII	CGCG	2 cut(s)	521, 763
AciI	CCGC	7 cut(s)	327, 350, 431, 512, 519, 521, 763
AclWI	GGATC	2 cut(s)	608, 788
AcoI	YGGCCR	2 cut(s)	100, 809
AcsI	RAATTY	3 cut(s)	6, 177, 645
AcuI	CTGAAG	2 cut(s)	558, 969
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 818, 1144
AflII	CTTAAG	2 cut(s)	148, 158
AjnI	CCWGG	1 cut(s)	973
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	7 cut(s)	153, 232, 528, 545, 1088, 1143, 1152
AluI	AGCT	7 cut(s)	153, 232, 528, 545, 1088, 1143, 1152
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	475, 794
AlwI	GGATC	2 cut(s)	608, 788
AoxI	GGCC	5 cut(s)	100, 262, 448, 809, 917
ApeKI	GCWGC	5 cut(s)	284, 391, 743, 857, 1152
ApoI	RAATTY	3 cut(s)	6, 177, 645
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	1 cut(s)	977
AsuHPI	GGTGA	5 cut(s)	250, 361, 1127, 1159, 1183
AvaII	GGWCC	1 cut(s)	977
BalI	TGGCCA	2 cut(s)	102, 811
BanI	GGYRCC	1 cut(s)	589
BbsI	GAAGAC	2 cut(s)	358, 1201
Bbv12I	GWGCWC	1 cut(s)	666
BbvCI	CCTCAGC	1 cut(s)	881
BbvI	GCAGC	5 cut(s)	296, 378, 755, 844, 1139
BccI	CCATC	2 cut(s)	820, 1010
BciT130I	CCWGG	1 cut(s)	975
BcoDI	GTCTC	2 cut(s)	475, 794
BfaI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
BfrI	CTTAAG	2 cut(s)	148, 158
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1153
BlsI	GCNGC	6 cut(s)	286, 393, 433, 745, 859, 1154
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	975
Bme18I	GGWCC	1 cut(s)	977
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	1 cut(s)	975
BmsI	GCATC	4 cut(s)	99, 730, 814, 1164
BpiI	GAAGAC	2 cut(s)	358, 1201
Bpu10I	CCTNAGC	1 cut(s)	881
BpuEI	CTTGAG	2 cut(s)	180, 717
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	414, 519, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 818, 1144
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	261, 345
BseBI	CCWGG	1 cut(s)	975
BseDI	CCNNGG	3 cut(s)	414, 519, 816
BseGI	GGATG	1 cut(s)	812
BseLI	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 818, 1144
BseMI	GCAATG	2 cut(s)	261, 345
BseMII	CTCAG	3 cut(s)	75, 455, 872
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	898
BseXI	GCAGC	5 cut(s)	296, 378, 755, 844, 1139
BseYI	CCCAGC	2 cut(s)	409, 1143
Bsh1236I	CGCG	2 cut(s)	521, 763
BshFI	GGCC	5 cut(s)	102, 264, 450, 811, 919
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	7 cut(s)	294, 295, 415, 521, 680, 818, 1144
BsmAI	GTCTC	2 cut(s)	475, 794
BsmBI	CGTCTC	1 cut(s)	794
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	2 cut(s)	423, 859
BsnI	GGCC	5 cut(s)	102, 264, 450, 811, 919
Bso31I	GGTCTC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	600, 780, 1099
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	7 cut(s)	327, 350, 431, 512, 519, 521, 763
BspANI	GGCC	5 cut(s)	102, 264, 450, 811, 919
BspCNI	CTCAG	3 cut(s)	74, 454, 873
BspFNI	CGCG	2 cut(s)	521, 763
BspLI	GGNNCC	1 cut(s)	591
BspPI	GGATC	2 cut(s)	608, 788
BspQI	GCTCTTC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	589
BspTI	CTTAAG	2 cut(s)	148, 158
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	2 cut(s)	261, 345
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	414, 519, 816
BssMI	GATC	3 cut(s)	600, 780, 1099
BssT1I	CCWWGG	2 cut(s)	414, 816
Bst2UI	CCWGG	1 cut(s)	975
Bst4CI	ACNGT	3 cut(s)	388, 570, 1001
Bst6I	CTCTTC	1 cut(s)	671
BstAFI	CTTAAG	2 cut(s)	148, 158
BstDEI	CTNAG	3 cut(s)	61, 441, 881
BstDSI	CCRYGG	2 cut(s)	414, 519
BstEII	GGTNACC	1 cut(s)	1171
BstF5I	GGATG	1 cut(s)	812
BstFNI	CGCG	2 cut(s)	521, 763
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	3 cut(s)	603, 783, 1102
BstMAI	GTCTC	2 cut(s)	475, 794
BstMBI	GATC	3 cut(s)	600, 780, 1099
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 752, 886, 1149
BstNI	CCWGG	1 cut(s)	975
BstPI	GGTNACC	1 cut(s)	1171
BstSCI	CCNGG	1 cut(s)	973
BstUI	CGCG	2 cut(s)	521, 763
BstV1I	GCAGC	5 cut(s)	296, 378, 755, 844, 1139
BstV2I	GAAGAC	2 cut(s)	358, 1201
BsuRI	GGCC	5 cut(s)	102, 264, 450, 811, 919
BtgI	CCRYGG	2 cut(s)	414, 519
BtgZI	GCGATG	1 cut(s)	837
BtsCI	GGATG	1 cut(s)	812
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
CfoI	GCGC	1 cut(s)	763
Cfr13I	GGNCC	1 cut(s)	977
Cfr42I	CCGCGG	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	4 cut(s)	415, 553, 685, 967
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	3 cut(s)	61, 441, 881
DpnI	GATC	3 cut(s)	602, 782, 1101
DpnII	GATC	3 cut(s)	600, 780, 1099
EaeI	YGGCCR	2 cut(s)	100, 809
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
Eco130I	CCWWGG	2 cut(s)	414, 816
Eco147I	AGGCCT	2 cut(s)	450, 919
Eco31I	GGTCTC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	977
Eco57I	CTGAAG	2 cut(s)	558, 969
Eco91I	GGTNACC	1 cut(s)	1171
EcoO65I	GGTNACC	1 cut(s)	1171
EcoRII	CCWGG	1 cut(s)	973
EcoT14I	CCWWGG	2 cut(s)	414, 816
ErhI	CCWWGG	2 cut(s)	414, 816
Esp3I	CGTCTC	1 cut(s)	794
FaeI	CATG	4 cut(s)	418, 556, 688, 970
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	4 cut(s)	414, 552, 684, 966
FauI	CCCGC	3 cut(s)	334, 514, 519
Fnu4HI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1153
FokI	GGATG	1 cut(s)	799
Fsp4HI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1153
FspBI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1153
GsaI	CCCAGC	2 cut(s)	413, 1147
HaeIII	GGCC	5 cut(s)	102, 264, 450, 811, 919
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	4 cut(s)	418, 556, 688, 970
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	2 cut(s)	301, 1056
HindII	GTYRAC	2 cut(s)	301, 1056
HinfI	GANTC	4 cut(s)	27, 190, 455, 503
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	5 cut(s)	250, 361, 1127, 1159, 1183
Hpy166II	GTNNAC	2 cut(s)	301, 1056
Hpy188I	TCNGA	4 cut(s)	64, 799, 988, 1099
Hpy188III	TCNNGA	1 cut(s)	653
Hpy8I	GTNNAC	2 cut(s)	301, 1056
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	5 cut(s)	299, 525, 580, 896, 1186
HpyCH4III	ACNGT	3 cut(s)	388, 570, 1001
HpyCH4V	TGCA	7 cut(s)	577, 623, 709, 743, 842, 850, 1155
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 752, 886, 1149
HpyF3I	CTNAG	3 cut(s)	61, 441, 881
Hsp92II	CATG	4 cut(s)	418, 556, 688, 970
HspAI	GCGC	1 cut(s)	761
KspAI	GTTAAC	1 cut(s)	301
KspI	CCGCGG	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	600, 780, 1099
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	2 cut(s)	158, 525
Lsp1109I	GCAGC	5 cut(s)	296, 378, 755, 844, 1139
LweI	GCATC	4 cut(s)	99, 730, 814, 1164
MaeI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
MaeIII	GTNAC	6 cut(s)	76, 163, 238, 555, 564, 1171
MalI	GATC	3 cut(s)	602, 782, 1101
MboI	GATC	3 cut(s)	600, 780, 1099
MboII	GAAGA	5 cut(s)	32, 358, 512, 658, 1206
MfeI	CAATTG	2 cut(s)	560, 890
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	2 cut(s)	102, 811
MluNI	TGGCCA	2 cut(s)	102, 811
MlyI	GAGTC	1 cut(s)	449
Mox20I	TGGCCA	2 cut(s)	102, 811
MscI	TGGCCA	2 cut(s)	102, 811
MseI	TTAA	5 cut(s)	149, 159, 300, 465, 1204
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	2 cut(s)	102, 811
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	2 cut(s)	148, 158
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	975
MunI	CAATTG	2 cut(s)	560, 890
Mva1269I	GAATGC	2 cut(s)	423, 859
MvaI	CCWGG	1 cut(s)	975
MvnI	CGCG	2 cut(s)	521, 763
MwoI	GCNNNNNNNGC	4 cut(s)	108, 752, 886, 1149
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	3 cut(s)	600, 780, 1099
NlaIII	CATG	4 cut(s)	418, 556, 688, 970
NlaIV	GGNNCC	1 cut(s)	591
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	4 cut(s)	163, 238, 555, 1171
OliI	CACNNNNGTG	1 cut(s)	386
PceI	AGGCCT	2 cut(s)	450, 919
PciSI	GCTCTTC	1 cut(s)	671
PctI	GAATGC	2 cut(s)	423, 859
PfeI	GAWTC	3 cut(s)	27, 190, 503
PkrI	GCNGC	6 cut(s)	286, 393, 433, 745, 859, 1154
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	973
PspEI	GGTNACC	1 cut(s)	1171
PspFI	CCCAGC	2 cut(s)	409, 1143
PspGI	CCWGG	1 cut(s)	973
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	977
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	386
SacII	CCGCGG	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	5 cut(s)	149, 159, 300, 465, 1204
SatI	GCNGC	6 cut(s)	285, 392, 432, 744, 858, 1153
Sau3AI	GATC	3 cut(s)	600, 780, 1099
Sau96I	GGNCC	1 cut(s)	977
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	975
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	4 cut(s)	99, 730, 814, 1164
Sfr303I	CCGCGG	1 cut(s)	522
SgrBI	CCGCGG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	977
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	4 cut(s)	148, 158, 195, 732
SmoI	CTYRAG	4 cut(s)	148, 158, 195, 732
SseBI	AGGCCT	2 cut(s)	450, 919
SsiI	CCGC	7 cut(s)	327, 350, 431, 512, 519, 521, 763
SspMI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
StuI	AGGCCT	2 cut(s)	450, 919
StyD4I	CCNGG	1 cut(s)	973
StyI	CCWWGG	2 cut(s)	414, 816
TaaI	ACNGT	3 cut(s)	388, 570, 1001
TaqI	TCGA	3 cut(s)	246, 783, 1082
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	3 cut(s)	27, 190, 503
Tru1I	TTAA	5 cut(s)	149, 159, 300, 465, 1204
Tru9I	TTAA	5 cut(s)	149, 159, 300, 465, 1204
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	4 cut(s)	163, 238, 555, 1171
TseI	GCWGC	5 cut(s)	284, 391, 743, 857, 1152
Tsp45I	GTSAC	4 cut(s)	163, 238, 555, 1171
TspDTI	ATGAA	4 cut(s)	287, 846, 915, 983
TspRI	CASTG	1 cut(s)	498
Vha464I	CTTAAG	2 cut(s)	148, 158
VpaK11BI	GGWCC	1 cut(s)	977
XapI	RAATTY	3 cut(s)	6, 177, 645
XbaI	TCTAGA	1 cut(s)	652
XcmI	CCANNNNNNNNNTGG	2 cut(s)	754, 1123
XspI	CTAG	6 cut(s)	12, 122, 140, 395, 653, 921
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.