Rroxscaffold_5G00379160

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
59638000 .. 59639403
1404 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00379160.1

Sequence Viewer

Length: 1362 bp
ATGGCAATGTGTACCAGAATCAGTGCTGCTCTTCTTCTTCTATGCTGGTTTATATGTTTCTCAGGGTTTGGTTTCGTGCAAAGAGTTGCGTCGCTTGGTATCAACTATGGCCAACTCGGCGACAATTTGCTACAACCACAACAAGTTATGAGCCTCTTAAGGTCCAGCAATATCACAAAAACAAGAATTTACGACACCAATCCGCAGATACTAACTGCATTCGCAAATTCGGATATTGAGCTCATTGTGACAGTGGAAAACGAAATGCTAAGCCAATTAACCGACCCCCAAGCAGGGCTTCAATGGGTTAGCACACACATCAAGCCTTACTTTCCCTCCACGAAAATCACAGGCGTTATGATAGGGAACGAGATTGATGCAACGGATTTGGTACCTAGCCTTGTACCGGCCATGTCCAGCATTCAAAAGGCCCTATCTCAGTTAGGCCTTGATTCACACATCAAGGTGTCATCGCCTTTTTCTTTTTCGGTGATGGAAGAGTCTTATCCACCTTCTGCTGGCAGTTTCAAAAGCGAGGTCTCGGGTGTGATGTCACAATTGTTACAGTTTTTGTCAAGCACAAAGGCGCCGTTTTGGATCAATGCATATCCTTACTTTGCGTACAAGGGCAACTCGAAAGATGTTCCTCTAGACTATGTGCTTTTCAGTAATGCCGGTTCATCAGCAGGAGTGACTGACCCTACTAGTAATTTGCACTATGACAACATGTTGTATGCTCAAGTAGATGCAGTCACTTATGCCATTTCTAAATTGGGCTTCGATGGCATAGAGGTTAGGGTCGCGGAGACAGGGTGGCCATCAAAAGGGGATGCTGGTGAACTTGGTGCAAGTTTAGAGAATGCTGCTATATACAATGGGAACTTGTTGAAGAGGCAATTGGCCAACGAAGGTACACCTTTGAAGCCTAAGCTTGACGTCTATATTTTTGCTCTTTTCAACGAGAACAAGAAGCCTGGACCAACATCGGAGAGGAATTTTGGTCTATTTCAACCGGATGGAACTTCGGCTTACAATGTGGGCTTGTCTGGATCATCATCTGCCTCCACTTCAACTCCTAACTCAACTGATGCCTCATCACCCCCAACCCCATCTAAGTCATCAAACACAGCTCCTAATTCAACTGATGCTTCATCACCCCCAACTCCAAGCCTATCAGAACCACCAACCTCATCACTTCCTGAGGTCAATATGACCTATTCCTCTGGTGCCAAGACAGCATCAATGGGACGCTGGGTGTACCGGATCATAACAACTGAGCACCTGGGAGTTGATACTGTAAAATTCACTCTCTGGGGTTCAGCTCCAGCAATCGAGTCTTTATATTTTCAAAAATTGGATTAG

Protein Analysis

453

Amino Acids

48.72

Weight (kDa)

5.07

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 32 - 346 6.6e-80 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 939
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 3 cut(s) 391, 586, 1226
AccII CGCG 1 cut(s) 803
AciI CCGC 2 cut(s) 203, 803
AclWI GGATC 3 cut(s) 605, 1057, 1271
AcoI YGGCCR 4 cut(s) 109, 408, 815, 900
AcsI RAATTY 4 cut(s) 186, 226, 994, 1301
AcyI GRCGYC 2 cut(s) 587, 936
AfaI GTAC 6 cut(s) 13, 393, 405, 623, 913, 1259
AfiI CCNNNNNNNGG 5 cut(s) 293, 294, 406, 518, 824
AflII CTTAAG 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 726
AhlI ACTAGT 1 cut(s) 704
AjnI CCWGG 2 cut(s) 973, 1281
AjuI GAANNNNNNNTTGG 4 cut(s) 282, 314, 881, 913
AluBI AGCT 4 cut(s) 241, 931, 1130, 1322
AluI AGCT 4 cut(s) 241, 931, 1130, 1322
Alw21I GWGCWC 2 cut(s) 243, 1281
Alw26I GTCTC 2 cut(s) 544, 800
AlwI GGATC 3 cut(s) 605, 1057, 1271
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 6 cut(s) 109, 408, 429, 445, 815, 900
ApeKI GCWGC 2 cut(s) 26, 863
ApoI RAATTY 4 cut(s) 186, 226, 994, 1301
ArsI GACNNNNNNTTYG 2 cut(s) 522, 554
Asp718I GGTACC 1 cut(s) 391
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 3 cut(s) 162, 430, 977
AsuHPI GGTGA 4 cut(s) 502, 848, 1089, 1146
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 2 cut(s) 162, 977
AxyI CCTNAGG 1 cut(s) 1200
BalI TGGCCA 3 cut(s) 111, 817, 902
BanI GGYRCC 3 cut(s) 391, 586, 1226
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 243, 1281
BbvI GCAGC 2 cut(s) 13, 850
BccI CCATC 5 cut(s) 487, 776, 826, 1010, 1117
BceAI ACGGC 1 cut(s) 574
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BciT130I CCWGG 2 cut(s) 975, 1283
BcoDI GTCTC 2 cut(s) 544, 800
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 3 cut(s) 396, 650, 705
BfoI RGCGCY 1 cut(s) 590
BfrI CTTAAG 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 2 cut(s) 27, 864
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 2 cut(s) 28, 865
Bme1390I CCNGG 2 cut(s) 975, 1283
Bme18I GGWCC 2 cut(s) 162, 977
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 3 cut(s) 162, 430, 977
BmiI GGNNCC 3 cut(s) 393, 588, 1228
BmrFI CCNGG 2 cut(s) 975, 1283
BmsI GCATC 6 cut(s) 367, 736, 820, 1078, 1135, 1247
BpmI CTGGAG 1 cut(s) 1308
Bpu10I CCTNAGC 1 cut(s) 927
Bpu1102I GCTNAGC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 1054
BsaHI GRCGYC 2 cut(s) 587, 936
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 1282
BsaWI WCCGGW 2 cut(s) 1012, 1260
BsaXI ACNNNNNCTCC 6 cut(s) 320, 350, 797, 827, 1057, 1087
Bsc4I CCNNNNNNNGG 5 cut(s) 293, 294, 406, 518, 824
Bse118I RCCGGY 2 cut(s) 406, 674
Bse21I CCTNAGG 1 cut(s) 1200
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 1054
BseBI CCWGG 2 cut(s) 975, 1283
BseDI CCNNGG 1 cut(s) 1282
BseGI GGATG 2 cut(s) 835, 1021
BseJI GATNNNNATC 1 cut(s) 1054
BseLI CCNNNNNNNGG 5 cut(s) 293, 294, 406, 518, 824
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 4 cut(s) 75, 452, 1191, 1266
BseXI GCAGC 2 cut(s) 13, 850
BseYI CCCAGC 1 cut(s) 1251
Bsh1236I CGCG 1 cut(s) 803
BshFI GGCC 6 cut(s) 111, 410, 431, 447, 817, 902
BshNI GGYRCC 3 cut(s) 391, 586, 1226
BsiHKAI GWGCWC 2 cut(s) 243, 1281
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 4 cut(s) 407, 675, 1013, 1261
BslFI GGGAC 1 cut(s) 1260
BslI CCNNNNNNNGG 5 cut(s) 293, 294, 406, 518, 824
BsmAI GTCTC 2 cut(s) 544, 800
BsmFI GGGAC 1 cut(s) 1260
BsmI GAATGC 3 cut(s) 218, 420, 865
BsnI GGCC 6 cut(s) 111, 410, 431, 447, 817, 902
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 2 cut(s) 243, 1281
Bsp143I GATC 3 cut(s) 597, 1049, 1263
Bsp1720I GCTNAGC 1 cut(s) 269
BspACI CCGC 2 cut(s) 203, 803
BspANI GGCC 6 cut(s) 111, 410, 431, 447, 817, 902
BspCNI CTCAG 4 cut(s) 74, 451, 1192, 1267
BspFNI CGCG 1 cut(s) 803
BspLI GGNNCC 3 cut(s) 393, 588, 1228
BspPI GGATC 3 cut(s) 605, 1057, 1271
BspQI GCTCTTC 1 cut(s) 36
BspT107I GGYRCC 3 cut(s) 391, 586, 1226
BspTI CTTAAG 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 406, 674
BssAI RCCGGY 2 cut(s) 406, 674
BssECI CCNNGG 1 cut(s) 1282
BssMI GATC 3 cut(s) 597, 1049, 1263
BssNI GRCGYC 2 cut(s) 587, 936
Bst2UI CCWGG 2 cut(s) 975, 1283
Bst4CI ACNGT 3 cut(s) 253, 567, 1297
Bst6I CTCTTC 3 cut(s) 36, 492, 884
BstACI GRCGYC 2 cut(s) 587, 936
BstAFI CTTAAG 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 7 cut(s) 61, 269, 438, 927, 1113, 1200, 1275
BstF5I GGATG 2 cut(s) 835, 1021
BstFNI CGCG 1 cut(s) 803
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 3 cut(s) 600, 1052, 1266
BstMAI GTCTC 2 cut(s) 544, 800
BstMBI GATC 3 cut(s) 597, 1049, 1263
BstMWI GCNNNNNNNGC 3 cut(s) 117, 783, 1235
BstNI CCWGG 2 cut(s) 975, 1283
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 2 cut(s) 973, 1281
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 2 cut(s) 13, 850
Bsu36I CCTNAGG 1 cut(s) 1200
BsuRI GGCC 6 cut(s) 111, 410, 431, 447, 817, 902
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 835, 1021
BtsIMutI CAGTG 2 cut(s) 28, 258
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 1 cut(s) 589
Cfr10I RCCGGY 2 cut(s) 406, 674
Cfr13I GGNCC 3 cut(s) 162, 430, 977
CseI GACGC 2 cut(s) 78, 1257
Csp6I GTAC 6 cut(s) 12, 392, 404, 622, 912, 1258
CviAII CATG 2 cut(s) 412, 727
CviQI GTAC 6 cut(s) 12, 392, 404, 622, 912, 1258
DdeI CTNAG 7 cut(s) 61, 269, 438, 927, 1113, 1200, 1275
DinI GGCGCC 1 cut(s) 588
DpnI GATC 3 cut(s) 599, 1051, 1265
DpnII GATC 3 cut(s) 597, 1049, 1263
EaeI YGGCCR 4 cut(s) 109, 408, 815, 900
Eam1104I CTCTTC 3 cut(s) 36, 492, 884
EarI CTCTTC 3 cut(s) 36, 492, 884
Ecl136II GAGCTC 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 2 cut(s) 162, 977
Eco53kI GAGCTC 1 cut(s) 241
Eco81I CCTNAGG 1 cut(s) 1200
Eco88I CYCGRG 1 cut(s) 541
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 973, 1281
EcoT22I ATGCAT 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 243
EgeI GGCGCC 1 cut(s) 588
EheI GGCGCC 1 cut(s) 588
FaeI CATG 2 cut(s) 415, 730
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 314, 346
FaqI GGGAC 1 cut(s) 1260
FatI CATG 2 cut(s) 411, 726
Fnu4HI GCNGC 2 cut(s) 27, 864
FokI GGATG 2 cut(s) 842, 1028
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 27, 864
FspBI CTAG 3 cut(s) 396, 650, 705
GlaI GCGC 1 cut(s) 588
GluI GCNGC 2 cut(s) 27, 864
GsaI CCCAGC 1 cut(s) 1255
GsuI CTGGAG 1 cut(s) 1308
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 6 cut(s) 111, 410, 431, 447, 817, 902
HapII CCGG 4 cut(s) 407, 675, 1013, 1261
HgaI GACGC 2 cut(s) 78, 1257
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 2 cut(s) 587, 936
Hin1II CATG 2 cut(s) 415, 730
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 4 cut(s) 18, 452, 500, 1334
HpaII CCGG 4 cut(s) 407, 675, 1013, 1261
HphI GGTGA 4 cut(s) 502, 848, 1089, 1146
Hpy166II GTNNAC 4 cut(s) 12, 839, 914, 1258
Hpy188I TCNGA 3 cut(s) 232, 988, 1177
Hpy188III TCNNGA 3 cut(s) 650, 1047, 1199
Hpy8I GTNNAC 4 cut(s) 12, 839, 914, 1258
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 522, 902
HpyCH4III ACNGT 3 cut(s) 253, 567, 1297
HpyCH4IV ACGT 1 cut(s) 936
HpyCH4V TGCA 7 cut(s) 79, 218, 380, 605, 715, 749, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 783, 1235
HpyF3I CTNAG 7 cut(s) 61, 269, 438, 927, 1113, 1200, 1275
HpySE526I ACGT 1 cut(s) 936
Hsp92I GRCGYC 2 cut(s) 587, 936
Hsp92II CATG 2 cut(s) 415, 730
HspAI GCGC 1 cut(s) 587
KasI GGCGCC 1 cut(s) 586
KpnI GGTACC 1 cut(s) 395
Kzo9I GATC 3 cut(s) 597, 1049, 1263
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 1135, 1327
Lsp1109I GCAGC 2 cut(s) 13, 850
LweI GCATC 6 cut(s) 367, 736, 820, 1078, 1135, 1247
MaeI CTAG 3 cut(s) 396, 650, 705
MaeII ACGT 1 cut(s) 936
MaeIII GTNAC 5 cut(s) 247, 552, 561, 691, 751
MalI GATC 3 cut(s) 599, 1051, 1265
MboI GATC 3 cut(s) 597, 1049, 1263
MboII GAAGA 5 cut(s) 23, 26, 29, 509, 901
MfeI CAATTG 2 cut(s) 557, 896
MhlI GDGCHC 2 cut(s) 243, 1281
MlsI TGGCCA 3 cut(s) 111, 817, 902
MluNI TGGCCA 3 cut(s) 111, 817, 902
Mly113I GGCGCC 1 cut(s) 587
MlyI GAGTC 2 cut(s) 509, 1343
Mox20I TGGCCA 3 cut(s) 111, 817, 902
Mph1103I ATGCAT 1 cut(s) 607
MscI TGGCCA 3 cut(s) 111, 817, 902
MseI TTAA 2 cut(s) 158, 278
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 3 cut(s) 111, 817, 902
MspCI CTTAAG 1 cut(s) 157
MspI CCGG 4 cut(s) 407, 675, 1013, 1261
MspR9I CCNGG 2 cut(s) 975, 1283
MunI CAATTG 2 cut(s) 557, 896
Mva1269I GAATGC 3 cut(s) 218, 420, 865
MvaI CCWGG 2 cut(s) 975, 1283
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 3 cut(s) 117, 783, 1235
NarI GGCGCC 1 cut(s) 587
NdeII GATC 3 cut(s) 597, 1049, 1263
NlaIII CATG 2 cut(s) 415, 730
NlaIV GGNNCC 3 cut(s) 393, 588, 1228
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 4 cut(s) 247, 552, 691, 751
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 1 cut(s) 730
PceI AGGCCT 1 cut(s) 447
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 3 cut(s) 218, 420, 865
PfeI GAWTC 2 cut(s) 18, 452
PkrI GCNGC 2 cut(s) 28, 865
PleI GAGTC 2 cut(s) 508, 1342
PluTI GGCGCC 1 cut(s) 590
PpsI GAGTC 2 cut(s) 508, 1342
PscI ACATGT 1 cut(s) 726
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 973, 1281
PspFI CCCAGC 1 cut(s) 1251
PspGI CCWGG 2 cut(s) 973, 1281
PspN4I GGNNCC 3 cut(s) 393, 588, 1228
PspPI GGNCC 3 cut(s) 162, 430, 977
PsrI GAACNNNNNNTAC 2 cut(s) 661, 693
RsaI GTAC 6 cut(s) 13, 393, 405, 623, 913, 1259
RsaNI GTAC 6 cut(s) 12, 392, 404, 622, 912, 1258
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 158, 278
SatI GCNGC 2 cut(s) 27, 864
Sau3AI GATC 3 cut(s) 597, 1049, 1263
Sau96I GGNCC 3 cut(s) 162, 430, 977
SchI GAGTC 2 cut(s) 509, 1343
ScrFI CCNGG 2 cut(s) 975, 1283
SduI GDGCHC 2 cut(s) 243, 1281
SfaNI GCATC 6 cut(s) 367, 736, 820, 1078, 1135, 1247
SfoI GGCGCC 1 cut(s) 588
SinI GGWCC 2 cut(s) 162, 977
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 157, 738
SmoI CTYRAG 2 cut(s) 157, 738
SpeI ACTAGT 1 cut(s) 704
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 2 cut(s) 203, 803
SspDI GGCGCC 1 cut(s) 586
SspMI CTAG 3 cut(s) 396, 650, 705
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 973, 1281
TaaI ACNGT 3 cut(s) 253, 567, 1297
TaiI ACGT 1 cut(s) 939
TaqI TCGA 3 cut(s) 635, 780, 1332
TfiI GAWTC 2 cut(s) 18, 452
Tru1I TTAA 2 cut(s) 158, 278
Tru9I TTAA 2 cut(s) 158, 278
TscAI CASTG 2 cut(s) 28, 258
TseFI GTSAC 4 cut(s) 247, 552, 691, 751
TseI GCWGC 2 cut(s) 26, 863
Tsp45I GTSAC 4 cut(s) 247, 552, 691, 751
TspDTI ATGAA 2 cut(s) 669, 1140
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 2 cut(s) 28, 258
Vha464I CTTAAG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 162, 977
XapI RAATTY 4 cut(s) 186, 226, 994, 1301
XbaI TCTAGA 1 cut(s) 649
XceI RCATGY 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 769
XspI CTAG 3 cut(s) 396, 650, 705
ZraI GACGTC 1 cut(s) 937
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.