MD10G1261700.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
35591126 .. 35593412
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1261700.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGCAGCATTTTTCAGCCGAATTTCCATTTTCAAGATTTTTCTTGTATTTACTCTATGTTTCTCAGATATTGGTTTTCTACAAGGAGCTACATCACTTGGCATCAACTATGGCCAACTTGGCGACAATTTACTTCCGCCAGAGAAAGTCCTGGACCTCTTGAGCTCCCTCAAGATCACGAAAGCGCGTATCTACGACACGAATCCTCAAGTCCTCACGGCATTTGCCAATTCTGGCGTCGAGCTAATGGTGACGATCGAAAATGCAATGTTAGGCCAGTTGATGAACCCTCAAGCAGCCTTCCAATGGGTTAGCTCCCACATCAAGCCTTATTTCCCAGCCACCAAAATCACCAGCATTGCCGTAGGCAACGAGGTCTTCACAGATGATGACACAACAGTACTCTTATCCAATCTTGTCCCGGCCATGGTCAGCATCCAGACGGCACTAACTCAGCTAGGCCTTGATTCCTACATTAAAATCTCCACCCCTTGTTCTCTGGCGGTCCTCGAAGAATCCTACCCGCCTTCGGCCGGGAGTTTCAAACCCGAGGTGGCTCAGGTCATGACACAACTGTTACAGTTCTTGCAAAGCACAAAGGCACCTTTTTGGATCAATGCCTATCCATATTTTGCATACAAAGGTGATCCAAACAGAGTCTCTTTGGACTATGTACTATTTAACGCCAACCAAGGGATGGTCGACCCTTTCACCAAGCTACACTATGACAACATGTTGTATGCACAAGTAGATGCAGCCATTTATGCCATGGCTAGGTTAGGGTTCAATGGTATTGAGGTCAAGGTTTCGGAAACGGGCTGGCCATCCAGAGGGGACTCGAACGAAATCGGTGCAACGCTACAGAATGCTGCCACTTACAACAGGAATCTGTTGAGAAGGCAGCTCCAGAATGAAGGCACTCCTCTGAGGCCTAAAATGAGGCTGGAGGTCTATGTGTTTGCTTTGTTCAATGAGGATATGAAGCCCGGACCAACGTCAGAAAGGAACTACGGACTATTTCAGCCGGATGGGACTATGGTTTACAATGTTGGATTGTCTGCCATATCAACTAGTAGAACACCAACTTCATCATCGTCATCATCAACAACATCAGCTTCCATTTCTGATGTCTTTTCCTCTGCTACAAAGGCAGCAACCATGGAATATCGTCAAAGCTGGGTGTGCTGGATTACTGTTTGCATGGTGACCTTCCATGTTTTTATGGGAAGGCCATTTTAA

Protein Analysis

413

Amino Acids

45.51

Weight (kDa)

5.72

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 33 - 350 1.9e-80 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AccB7I CCANNNNNTGG 1 cut(s) 697
AccI GTMKAC 1 cut(s) 702
AccII CGCG 1 cut(s) 187
AciI CCGC 3 cut(s) 137, 503, 524
AclWI GGATC 2 cut(s) 620, 641
AcoI YGGCCR 4 cut(s) 112, 423, 531, 821
AcsI RAATTY 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 402, 675
AfiI CCNNNNNNNGG 8 cut(s) 306, 427, 529, 533, 693, 697, 774, 830
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 4 cut(s) 34, 544, 787, 970
AhlI ACTAGT 1 cut(s) 1070
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 9 cut(s) 89, 165, 244, 315, 457, 718, 904, 1115, 1176
AluI AGCT 9 cut(s) 89, 165, 244, 315, 457, 718, 904, 1115, 1176
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 664
AlwI GGATC 2 cut(s) 620, 641
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 8 cut(s) 112, 274, 423, 460, 531, 821, 929, 1229
ApeKI GCWGC 6 cut(s) 5, 296, 755, 869, 901, 1151
ApoI RAATTY 1 cut(s) 21
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 3 cut(s) 154, 505, 989
AsuC2I CCSGG 3 cut(s) 422, 535, 987
AsuHPI GGTGA 5 cut(s) 262, 343, 656, 703, 1216
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 3 cut(s) 154, 505, 989
BalI TGGCCA 2 cut(s) 114, 823
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 6 cut(s) 17, 308, 767, 856, 913, 1163
BccI CCATC 3 cut(s) 691, 832, 1022
BceAI ACGGC 3 cut(s) 234, 347, 459
BcgI CGANNNNNNTGC 2 cut(s) 833, 867
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 3 cut(s) 422, 535, 987
BcoDI GTCTC 1 cut(s) 664
BcuI ACTAGT 1 cut(s) 1070
BfaI CTAG 3 cut(s) 458, 774, 1071
BfmI CTRYAG 1 cut(s) 860
BglI GCCNNNNNGGC 1 cut(s) 120
BisI GCNGC 6 cut(s) 6, 297, 756, 870, 902, 1152
BlsI GCNGC 6 cut(s) 7, 298, 757, 871, 903, 1153
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 4 cut(s) 152, 422, 535, 987
Bme18I GGWCC 3 cut(s) 154, 505, 989
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 3 cut(s) 154, 505, 989
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 4 cut(s) 152, 422, 535, 987
BmsI GCATC 3 cut(s) 111, 444, 742
BoxI GACNNNNGTC 1 cut(s) 994
BpiI GAAGAC 1 cut(s) 370
BpmI CTGGAG 2 cut(s) 890, 965
Bpu10I CCTNAGC 1 cut(s) 558
BpuEI CTTGAG 4 cut(s) 155, 181, 192, 276
BpuMI CCSGG 3 cut(s) 422, 535, 987
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 5 cut(s) 426, 549, 691, 768, 1158
Bsc4I CCNNNNNNNGG 8 cut(s) 306, 427, 529, 533, 693, 697, 774, 830
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 273, 357
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 5 cut(s) 426, 549, 691, 768, 1158
BseGI GGATG 4 cut(s) 435, 702, 824, 1033
BseLI CCNNNNNNNGG 8 cut(s) 306, 427, 529, 533, 693, 697, 774, 830
BseMI GCAATG 2 cut(s) 273, 357
BseMII CTCAG 4 cut(s) 78, 467, 572, 917
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 912
BseX3I CGGCCG 1 cut(s) 531
BseXI GCAGC 6 cut(s) 17, 308, 767, 856, 913, 1163
BseYI CCCAGC 2 cut(s) 337, 1176
Bsh1236I CGCG 1 cut(s) 187
Bsh1285I CGRYCG 2 cut(s) 258, 534
BshFI GGCC 8 cut(s) 114, 276, 425, 462, 533, 823, 931, 1231
BshNI GGYRCC 1 cut(s) 601
BsiEI CGRYCG 2 cut(s) 258, 534
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 4 cut(s) 422, 534, 987, 1025
BslFI GGGAC 3 cut(s) 404, 848, 1045
BslI CCNNNNNNNGG 8 cut(s) 306, 427, 529, 533, 693, 697, 774, 830
BsmAI GTCTC 1 cut(s) 664
BsmFI GGGAC 3 cut(s) 404, 848, 1045
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 8 cut(s) 114, 276, 425, 462, 533, 823, 931, 1231
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 174, 255, 612, 646
Bsp19I CCATGG 3 cut(s) 426, 768, 1158
BspACI CCGC 3 cut(s) 137, 503, 524
BspANI GGCC 8 cut(s) 114, 276, 425, 462, 533, 823, 931, 1231
BspCNI CTCAG 4 cut(s) 77, 466, 571, 918
BspFNI CGCG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 2 cut(s) 620, 641
BspT107I GGYRCC 1 cut(s) 601
BsrDI GCAATG 2 cut(s) 273, 357
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 5 cut(s) 426, 549, 691, 768, 1158
BssMI GATC 4 cut(s) 174, 255, 612, 646
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 4 cut(s) 426, 691, 768, 1158
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 400, 576, 582, 1195
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 821
BstDEI CTNAG 4 cut(s) 64, 453, 558, 926
BstDSI CCRYGG 3 cut(s) 426, 768, 1158
BstEII GGTNACC 1 cut(s) 1204
BstF5I GGATG 4 cut(s) 435, 702, 824, 1033
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 4 cut(s) 177, 258, 615, 649
BstMAI GTCTC 1 cut(s) 664
BstMBI GATC 4 cut(s) 174, 255, 612, 646
BstMCI CGRYCG 2 cut(s) 258, 534
BstMWI GCNNNNNNNGC 4 cut(s) 120, 764, 1148, 1182
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 736
BstPAI GACNNNNGTC 1 cut(s) 994
BstPI GGTNACC 1 cut(s) 1204
BstSCI CCNGG 4 cut(s) 150, 420, 533, 985
BstSFI CTRYAG 1 cut(s) 860
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 6 cut(s) 17, 308, 767, 856, 913, 1163
BstV2I GAAGAC 1 cut(s) 370
BstZI CGGCCG 1 cut(s) 531
BsuRI GGCC 8 cut(s) 114, 276, 425, 462, 533, 823, 931, 1231
BtgI CCRYGG 3 cut(s) 426, 768, 1158
BtsCI GGATG 4 cut(s) 435, 702, 824, 1033
Cac8I GCNNGC 1 cut(s) 821
CciI TCATGA 1 cut(s) 564
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 3 cut(s) 154, 505, 989
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 401, 674
CviAII CATG 7 cut(s) 427, 565, 733, 769, 1159, 1201, 1214
CviQI GTAC 2 cut(s) 401, 674
DdeI CTNAG 4 cut(s) 64, 453, 558, 926
DpnI GATC 4 cut(s) 176, 257, 614, 648
DpnII GATC 4 cut(s) 174, 255, 612, 646
EaeI YGGCCR 4 cut(s) 112, 423, 531, 821
EagI CGGCCG 1 cut(s) 531
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 165
EclXI CGGCCG 1 cut(s) 531
Eco130I CCWWGG 4 cut(s) 426, 691, 768, 1158
Eco147I AGGCCT 2 cut(s) 462, 931
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 3 cut(s) 154, 505, 989
Eco52I CGGCCG 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 548
Eco91I GGTNACC 1 cut(s) 1204
EcoICRI GAGCTC 1 cut(s) 165
EcoO65I GGTNACC 1 cut(s) 1204
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 4 cut(s) 426, 691, 768, 1158
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 4 cut(s) 426, 691, 768, 1158
FaeI CATG 7 cut(s) 430, 568, 736, 772, 1162, 1204, 1217
FaqI GGGAC 3 cut(s) 404, 848, 1045
FatI CATG 7 cut(s) 426, 564, 732, 768, 1158, 1200, 1213
FauI CCCGC 1 cut(s) 531
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 6 cut(s) 6, 297, 756, 870, 902, 1152
FokI GGATG 4 cut(s) 422, 709, 811, 1040
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 6 cut(s) 6, 297, 756, 870, 902, 1152
FspBI CTAG 3 cut(s) 458, 774, 1071
GlaI GCGC 1 cut(s) 186
GluI GCNGC 6 cut(s) 6, 297, 756, 870, 902, 1152
GsaI CCCAGC 2 cut(s) 341, 1180
GsuI CTGGAG 2 cut(s) 890, 965
HaeIII GGCC 8 cut(s) 114, 276, 425, 462, 533, 823, 931, 1231
HapII CCGG 4 cut(s) 422, 534, 987, 1025
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 7 cut(s) 430, 568, 736, 772, 1162, 1204, 1217
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 6 cut(s) 202, 467, 515, 657, 836, 886
HpaII CCGG 4 cut(s) 422, 534, 987, 1025
HphI GGTGA 5 cut(s) 262, 343, 656, 703, 1216
Hpy166II GTNNAC 2 cut(s) 703, 1042
Hpy188I TCNGA 5 cut(s) 67, 811, 927, 1000, 1126
Hpy188III TCNNGA 8 cut(s) 34, 160, 172, 178, 439, 565, 828, 907
Hpy8I GTNNAC 2 cut(s) 703, 1042
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 6 cut(s) 310, 537, 891, 908, 1219, 1221
HpyCH4III ACNGT 4 cut(s) 400, 576, 582, 1195
HpyCH4IV ACGT 1 cut(s) 995
HpyCH4V TGCA 7 cut(s) 266, 589, 635, 743, 755, 854, 1200
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 764, 1148, 1182
HpyF3I CTNAG 4 cut(s) 64, 453, 558, 926
HpySE526I ACGT 1 cut(s) 995
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 7 cut(s) 430, 568, 736, 772, 1162, 1204, 1217
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 4 cut(s) 174, 255, 612, 646
LmnI GCTCC 4 cut(s) 86, 170, 320, 909
Lsp1109I GCAGC 6 cut(s) 17, 308, 767, 856, 913, 1163
LweI GCATC 3 cut(s) 111, 444, 742
MaeI CTAG 3 cut(s) 458, 774, 1071
MaeII ACGT 1 cut(s) 995
MaeIII GTNAC 3 cut(s) 250, 576, 1204
MalI GATC 4 cut(s) 176, 257, 614, 648
MboI GATC 4 cut(s) 174, 255, 612, 646
MboII GAAGA 2 cut(s) 370, 524
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 2 cut(s) 114, 823
MluCI AATT 3 cut(s) 21, 127, 229
MluNI TGGCCA 2 cut(s) 114, 823
MlyI GAGTC 2 cut(s) 666, 830
MmeI TCCRAC 1 cut(s) 1030
Mox20I TGGCCA 2 cut(s) 114, 823
MscI TGGCCA 2 cut(s) 114, 823
MseI TTAA 3 cut(s) 477, 681, 1237
Msp20I TGGCCA 2 cut(s) 114, 823
MspI CCGG 4 cut(s) 422, 534, 987, 1025
MspR9I CCNGG 4 cut(s) 152, 422, 535, 987
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 120, 764, 1148, 1182
NciI CCSGG 3 cut(s) 422, 535, 987
NcoI CCATGG 3 cut(s) 426, 768, 1158
NdeII GATC 4 cut(s) 174, 255, 612, 646
NlaIII CATG 7 cut(s) 430, 568, 736, 772, 1162, 1204, 1217
NlaIV GGNNCC 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 250, 1204
NspI RCATGY 1 cut(s) 736
PagI TCATGA 1 cut(s) 564
PceI AGGCCT 2 cut(s) 462, 931
PciI ACATGT 1 cut(s) 732
PctI GAATGC 1 cut(s) 871
PfeI GAWTC 4 cut(s) 202, 467, 515, 886
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 6 cut(s) 7, 298, 757, 871, 903, 1153
Ple19I CGATCG 1 cut(s) 258
PleI GAGTC 2 cut(s) 665, 830
PpsI GAGTC 2 cut(s) 665, 830
PscI ACATGT 1 cut(s) 732
PshAI GACNNNNGTC 1 cut(s) 994
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 1204
PspFI CCCAGC 2 cut(s) 337, 1176
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 3 cut(s) 154, 505, 989
PvuI CGATCG 1 cut(s) 258
RsaI GTAC 2 cut(s) 402, 675
RsaNI GTAC 2 cut(s) 401, 674
SacI GAGCTC 1 cut(s) 167
SalI GTCGAC 1 cut(s) 701
SaqAI TTAA 3 cut(s) 477, 681, 1237
SatI GCNGC 6 cut(s) 6, 297, 756, 870, 902, 1152
Sau3AI GATC 4 cut(s) 174, 255, 612, 646
Sau96I GGNCC 3 cut(s) 154, 505, 989
ScaI AGTACT 1 cut(s) 402
SchI GAGTC 2 cut(s) 666, 830
ScrFI CCNGG 4 cut(s) 152, 422, 535, 987
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 3 cut(s) 111, 444, 742
SfcI CTRYAG 1 cut(s) 860
SinI GGWCC 3 cut(s) 154, 505, 989
SmlI CTYRAG 4 cut(s) 160, 170, 207, 291
SmoI CTYRAG 4 cut(s) 160, 170, 207, 291
SpeI ACTAGT 1 cut(s) 1070
Sse9I AATT 3 cut(s) 21, 127, 229
SseBI AGGCCT 2 cut(s) 462, 931
SsiI CCGC 3 cut(s) 137, 503, 524
SspMI CTAG 3 cut(s) 458, 774, 1071
SstI GAGCTC 1 cut(s) 167
StuI AGGCCT 2 cut(s) 462, 931
StyD4I CCNGG 4 cut(s) 150, 420, 533, 985
StyI CCWWGG 4 cut(s) 426, 691, 768, 1158
TaaI ACNGT 4 cut(s) 400, 576, 582, 1195
TaiI ACGT 1 cut(s) 998
TaqI TCGA 5 cut(s) 240, 258, 510, 702, 839
TasI AATT 3 cut(s) 21, 127, 229
TatI WGTACW 2 cut(s) 400, 673
TfiI GAWTC 4 cut(s) 202, 467, 515, 886
Tru1I TTAA 3 cut(s) 477, 681, 1237
Tru9I TTAA 3 cut(s) 477, 681, 1237
TseFI GTSAC 2 cut(s) 250, 1204
TseI GCWGC 6 cut(s) 5, 296, 755, 869, 901, 1151
Tsp45I GTSAC 2 cut(s) 250, 1204
TspDTI ATGAA 4 cut(s) 299, 927, 995, 1077
TspGWI ACGGA 1 cut(s) 1026
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 3 cut(s) 154, 505, 989
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 2 cut(s) 694, 766
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 3 cut(s) 458, 774, 1071
ZrmI AGTACT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.