Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Forward (+)

58518488 .. 58524082

Gene Structure 5595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG363900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCTTTGTTTTTCTAGTTATTTGTCAATGGCAAGTTTTAGAAGAATCAGTGCTGTTTTTCTTCTTCTGTGTTCGCTGGTTTGTTTACTACATGGAGTTTCATCACTTGGCATAAACTATGGCCAACTCGGTGACAATTTGCTGCCACCACAGCAAGTAGTGAACCTCCTAACCGCCAACAACATCACCAAAGCAAGAATCTACGACACAAATCCACAAATATTAACTGCATTCGCCAATTCCAATATTGAGCTAATTGTGACAGTTGAAAATGAAGTGCTGGGAGAAATAACCAATTCCGAAGCAGGCCTTCAATGGGTTAGCACACACATCAAGCCTTATTTTCCCGCAACGAAAATTACAGGCATAGCTGTGGGGAACGAGATTGATGCAACGGATTTGCTACCTAACCTTGTACCGGCCATGTCCAGCATTCAAGGGGCACTTTCTCAGCTAGGCCTTGACTCAAACATCAAGGTGTCATCGTCTTTTTCTTATTCGGTGATCAAAGAGTCTTATCCGCCTTCTGCTGGCAGTTTCAAAAGCGAGCTCTCCAGTGTAATGTCACAATTGTTACAGTTTCTGTCAAGCACAAAGGCACCATTTTGGATCAATGCATATCCTTACTTTGCATACAAGGGCAACTCGAAAGAAATTCCTCTAGACTATGTGCTTTTCAGTAATGCCGGTTCATCAGCAGGAGTGACCGACCCTACTAGCAATTTGCACTATGACAACATGTTGTATGCTCAAGTAGATGCAGTCACTTATGCCATTTCTAAATTGGGCTTCGATGGCATAGAGGTTAGGGTCGCAGAGACAGGGTGGCCATCAAAAGGGGATGTTGGTGAACTTGGTGCAAGTTTAGAGAATGCTGCTATATACAATGGGAACTTGTTGAAGAGGCAATTGGCCAACGAAGGTACACCTTTGAGGCCTAAGCTTGATGTCTATATTTTCGCTCTTTTTAACGAGAACAAGAAGCCTGGACCAACATCGGAGAGGAATTTTGGTCTATTTCAACCGGATGGAACTTCGGCTTACAATGTGGGCTTGTCTGGATCATCATCTACCTCAACTAATGCCCCATCACCCCCATCGCCAAGCCTATCAAAACCACCAACTTCAGCTACCAACTCAATTGGTGCTTCATCATCACCCTCAATCCCATTAAAATCATCAAGCTCGGCTACCAATTCAACTAATGCCTCATCCCCCTCGTCACATCCTGAGATTGGTATGACTTATTCCTCTGGTGCCAAGGCAGCAACAATGGGAAGCTTGGTGTACATTTTTCTTTGTGTATTGACCTTCCAATTTTGTATGATGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

444

Amino Acids

47.21

Weight (kDa)

5.47

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	36 - 350	1.6e-81	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	598, 1256
AciI	CCGC	3 cut(s)	174, 348, 521
AclWI	GGATC	2 cut(s)	617, 1069
AcoI	YGGCCR	4 cut(s)	121, 420, 827, 912
AcsI	RAATTY	2 cut(s)	654, 1006
AcuI	CTGAAG	1 cut(s)	1110
AfaI	GTAC	3 cut(s)	417, 925, 1289
AfiI	CCNNNNNNNGG	5 cut(s)	316, 418, 530, 836, 1235
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	7 cut(s)	269, 314, 437, 541, 901, 1022, 1200
AjnI	CCWGG	1 cut(s)	985
AjuI	GAANNNNNNNTTGG	2 cut(s)	893, 925
AluBI	AGCT	8 cut(s)	253, 371, 454, 550, 943, 1130, 1185, 1281
AluI	AGCT	8 cut(s)	253, 371, 454, 550, 943, 1130, 1185, 1281
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	2 cut(s)	617, 1069
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	7 cut(s)	121, 307, 420, 457, 827, 912, 935
ApeKI	GCWGC	3 cut(s)	142, 875, 1265
ApoI	RAATTY	2 cut(s)	654, 1006
AspS9I	GGNCC	1 cut(s)	989
AsuHPI	GGTGA	6 cut(s)	143, 178, 514, 860, 1083, 1149
AvaII	GGWCC	1 cut(s)	989
BaeGI	GKGCMC	1 cut(s)	445
BalI	TGGCCA	3 cut(s)	123, 829, 914
BanI	GGYRCC	2 cut(s)	598, 1256
BanII	GRGCYC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	129, 862, 1277
BccI	CCATC	5 cut(s)	788, 838, 1022, 1096, 1105
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	1 cut(s)	987
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	812
BfaI	CTAG	5 cut(s)	15, 455, 662, 717, 1333
BisI	GCNGC	3 cut(s)	143, 876, 1266
BlsI	GCNGC	3 cut(s)	144, 877, 1267
Bme1390I	CCNGG	1 cut(s)	987
Bme18I	GGWCC	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	989
BmiI	GGNNCC	2 cut(s)	600, 1258
BmrFI	CCNGG	1 cut(s)	987
BmsI	GCATC	2 cut(s)	379, 748
BpmI	CTGGAG	1 cut(s)	538
Bpu10I	CCTNAGC	1 cut(s)	939
BpuEI	CTTGAG	1 cut(s)	735
BsaBI	GATNNNNATC	1 cut(s)	1066
BsaJI	CCNNGG	1 cut(s)	1260
BsaWI	WCCGGW	1 cut(s)	1024
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 418, 530, 836, 1235
Bse118I	RCCGGY	2 cut(s)	418, 686
Bse1I	ACTGG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	1066
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	1 cut(s)	1260
BseGI	GGATG	4 cut(s)	847, 1033, 1211, 1225
BseJI	GATNNNNATC	1 cut(s)	1066
BseLI	CCNNNNNNNGG	5 cut(s)	316, 418, 530, 836, 1235
BseMII	CTCAG	2 cut(s)	464, 1221
BseNI	ACTGG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	129, 862, 1277
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	7 cut(s)	123, 309, 422, 459, 829, 914, 937
BshNI	GGYRCC	2 cut(s)	598, 1256
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	419, 687, 1025
BslI	CCNNNNNNNGG	5 cut(s)	316, 418, 530, 836, 1235
BsmAI	GTCTC	1 cut(s)	812
BsmI	GAATGC	3 cut(s)	230, 432, 877
BsnI	GGCC	7 cut(s)	123, 309, 422, 459, 829, 914, 937
Bsp1286I	GDGCHC	2 cut(s)	445, 552
Bsp1407I	TGTACA	1 cut(s)	1287
Bsp143I	GATC	4 cut(s)	504, 609, 1061, 1329
BspACI	CCGC	3 cut(s)	174, 348, 521
BspANI	GGCC	7 cut(s)	123, 309, 422, 459, 829, 914, 937
BspCNI	CTCAG	2 cut(s)	463, 1222
BspLI	GGNNCC	2 cut(s)	600, 1258
BspPI	GGATC	2 cut(s)	617, 1069
BspT107I	GGYRCC	2 cut(s)	598, 1256
BsrFI	RCCGGY	2 cut(s)	418, 686
BsrGI	TGTACA	1 cut(s)	1287
BsrI	ACTGG	1 cut(s)	555
BssAI	RCCGGY	2 cut(s)	418, 686
BssECI	CCNNGG	1 cut(s)	1260
BssMI	GATC	4 cut(s)	504, 609, 1061, 1329
BssT1I	CCWWGG	1 cut(s)	1260
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	2 cut(s)	265, 579
Bst6I	CTCTTC	1 cut(s)	896
BstAUI	TGTACA	1 cut(s)	1287
BstC8I	GCNNGC	3 cut(s)	307, 532, 548
BstDEI	CTNAG	3 cut(s)	450, 939, 1230
BstF5I	GGATG	4 cut(s)	847, 1033, 1211, 1225
BstKTI	GATC	4 cut(s)	507, 612, 1064, 1332
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	4 cut(s)	504, 609, 1061, 1329
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 795, 1265
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	985
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	3 cut(s)	129, 862, 1277
BsuRI	GGCC	7 cut(s)	123, 309, 422, 459, 829, 914, 937
BtgZI	GCGATG	1 cut(s)	1083
BtsCI	GGATG	4 cut(s)	847, 1033, 1211, 1225
BtsIMutI	CAGTG	2 cut(s)	55, 562
Cac8I	GCNNGC	3 cut(s)	307, 532, 548
CaiI	CAGNNNCTG	1 cut(s)	583
Cfr10I	RCCGGY	2 cut(s)	418, 686
Cfr13I	GGNCC	1 cut(s)	989
Csp6I	GTAC	3 cut(s)	416, 924, 1288
CviAII	CATG	3 cut(s)	92, 424, 739
CviQI	GTAC	3 cut(s)	416, 924, 1288
DdeI	CTNAG	3 cut(s)	450, 939, 1230
DpnI	GATC	4 cut(s)	506, 611, 1063, 1331
DpnII	GATC	4 cut(s)	504, 609, 1061, 1329
EaeI	YGGCCR	4 cut(s)	121, 420, 827, 912
Eam1104I	CTCTTC	1 cut(s)	896
EarI	CTCTTC	1 cut(s)	896
EciI	GGCGGA	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	1260
Eco147I	AGGCCT	3 cut(s)	309, 459, 937
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	989
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	1110
EcoICRI	GAGCTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	1260
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	1260
FaeI	CATG	3 cut(s)	95, 427, 742
FalI	AAGNNNNNCTT	4 cut(s)	294, 326, 429, 461
FatI	CATG	3 cut(s)	91, 423, 738
FauI	CCCGC	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	143, 876, 1266
FokI	GGATG	4 cut(s)	854, 1040, 1198, 1212
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	3 cut(s)	143, 876, 1266
FspBI	CTAG	5 cut(s)	15, 455, 662, 717, 1333
GluI	GCNGC	3 cut(s)	143, 876, 1266
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	7 cut(s)	123, 309, 422, 459, 829, 914, 937
HapII	CCGG	3 cut(s)	419, 687, 1025
Hin1II	CATG	3 cut(s)	95, 427, 742
HindIII	AAGCTT	2 cut(s)	941, 1279
HinfI	GANTC	4 cut(s)	45, 198, 464, 512
HpaII	CCGG	3 cut(s)	419, 687, 1025
HphI	GGTGA	6 cut(s)	143, 178, 514, 860, 1083, 1149
Hpy166II	GTNNAC	5 cut(s)	86, 163, 851, 926, 1288
Hpy188I	TCNGA	2 cut(s)	301, 1000
Hpy188III	TCNNGA	3 cut(s)	662, 1059, 1229
Hpy8I	GTNNAC	5 cut(s)	86, 163, 851, 926, 1288
HpyAV	CCTTC	4 cut(s)	320, 534, 914, 1321
HpyCH4III	ACNGT	2 cut(s)	265, 579
HpyCH4V	TGCA	7 cut(s)	230, 392, 617, 632, 727, 761, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 795, 1265
HpyF3I	CTNAG	3 cut(s)	450, 939, 1230
Hsp92II	CATG	3 cut(s)	95, 427, 742
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	504, 609, 1061, 1329
Lsp1109I	GCAGC	3 cut(s)	129, 862, 1277
LweI	GCATC	2 cut(s)	379, 748
MaeI	CTAG	5 cut(s)	15, 455, 662, 717, 1333
MaeIII	GTNAC	7 cut(s)	131, 259, 564, 573, 703, 763, 1221
MalI	GATC	4 cut(s)	506, 611, 1063, 1331
MboI	GATC	4 cut(s)	504, 609, 1061, 1329
MboII	GAAGA	4 cut(s)	53, 54, 56, 913
MfeI	CAATTG	3 cut(s)	569, 908, 1140
MhlI	GDGCHC	2 cut(s)	445, 552
MlsI	TGGCCA	3 cut(s)	123, 829, 914
MluNI	TGGCCA	3 cut(s)	123, 829, 914
MlyI	GAGTC	2 cut(s)	458, 521
Mox20I	TGGCCA	3 cut(s)	123, 829, 914
Mph1103I	ATGCAT	1 cut(s)	619
MscI	TGGCCA	3 cut(s)	123, 829, 914
MseI	TTAA	3 cut(s)	224, 969, 1172
MslI	CAYNNNNRTG	2 cut(s)	371, 476
Msp20I	TGGCCA	3 cut(s)	123, 829, 914
MspI	CCGG	3 cut(s)	419, 687, 1025
MspR9I	CCNGG	1 cut(s)	987
MunI	CAATTG	3 cut(s)	569, 908, 1140
Mva1269I	GAATGC	3 cut(s)	230, 432, 877
MvaI	CCWGG	1 cut(s)	987
MwoI	GCNNNNNNNGC	3 cut(s)	151, 795, 1265
NdeII	GATC	4 cut(s)	504, 609, 1061, 1329
NlaIII	CATG	3 cut(s)	95, 427, 742
NlaIV	GGNNCC	2 cut(s)	600, 1258
NmeAIII	GCCGAG	1 cut(s)	1166
NmuCI	GTSAC	6 cut(s)	131, 259, 564, 703, 763, 1221
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	742
PceI	AGGCCT	3 cut(s)	309, 459, 937
PciI	ACATGT	1 cut(s)	738
PctI	GAATGC	3 cut(s)	230, 432, 877
PfeI	GAWTC	2 cut(s)	45, 198
PkrI	GCNGC	3 cut(s)	144, 877, 1267
PleI	GAGTC	2 cut(s)	458, 520
PpsI	GAGTC	2 cut(s)	458, 520
PscI	ACATGT	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	985
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	2 cut(s)	600, 1258
PspPI	GGNCC	1 cut(s)	989
PsrI	GAACNNNNNNTAC	2 cut(s)	673, 705
PstNI	CAGNNNCTG	1 cut(s)	583
RsaI	GTAC	3 cut(s)	417, 925, 1289
RsaNI	GTAC	3 cut(s)	416, 924, 1288
RseI	CAYNNNNRTG	2 cut(s)	371, 476
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	224, 969, 1172
SatI	GCNGC	3 cut(s)	143, 876, 1266
Sau3AI	GATC	4 cut(s)	504, 609, 1061, 1329
Sau96I	GGNCC	1 cut(s)	989
SchI	GAGTC	2 cut(s)	458, 521
ScrFI	CCNGG	1 cut(s)	987
SduI	GDGCHC	2 cut(s)	445, 552
SfaNI	GCATC	2 cut(s)	379, 748
SinI	GGWCC	1 cut(s)	989
SmiMI	CAYNNNNRTG	2 cut(s)	371, 476
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
SseBI	AGGCCT	3 cut(s)	309, 459, 937
SsiI	CCGC	3 cut(s)	174, 348, 521
SspI	AATATT	2 cut(s)	222, 247
SspMI	CTAG	5 cut(s)	15, 455, 662, 717, 1333
SstI	GAGCTC	1 cut(s)	552
StuI	AGGCCT	3 cut(s)	309, 459, 937
StyD4I	CCNGG	1 cut(s)	985
StyI	CCWWGG	1 cut(s)	1260
TaaI	ACNGT	2 cut(s)	265, 579
TaqI	TCGA	2 cut(s)	647, 792
TaqII	GACCGA	1 cut(s)	722
TatI	WGTACW	1 cut(s)	1287
TfiI	GAWTC	2 cut(s)	45, 198
Tru1I	TTAA	3 cut(s)	224, 969, 1172
Tru9I	TTAA	3 cut(s)	224, 969, 1172
TscAI	CASTG	2 cut(s)	55, 562
TseFI	GTSAC	6 cut(s)	131, 259, 564, 703, 763, 1221
TseI	GCWGC	3 cut(s)	142, 875, 1265
Tsp45I	GTSAC	6 cut(s)	131, 259, 564, 703, 763, 1221
TspDTI	ATGAA	4 cut(s)	90, 288, 681, 1140
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	55, 562
VpaK11BI	GGWCC	1 cut(s)	989
XapI	RAATTY	2 cut(s)	654, 1006
XbaI	TCTAGA	1 cut(s)	661
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XspI	CTAG	5 cut(s)	15, 455, 662, 717, 1333
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.