Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Forward (+)

29783106 .. 29783852

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGAGAGTCTTATCCACCTTCTGCTGGCAGTTTCAAGAGTGATGTCTCCGATGTAATGTCACAAGTGTTACAGTTCTTGTCAACCACAAAGTCACCATTTTGGATCAATGCATATCCTTACTTTGTGTACAAGGGCAACTCGAAAGAAATTCCTCTAGAATATGTGCTTTTCAGCAGTGCCGCCGGTTCATCCGCAGGAATGACAGACCCTAGTAGCAATTTGCACTATGACAACTTGTTGTATGCTCAAGTAGATGCTGTCATTTATGCAATTAAGGCATTGGGATTCGATGATATAGAGGTTAAGGTTGGGGAGACAGGATGGCCATCGAAAGGGGATGACGATGAACTTGGTGCAAATTCAGAGAATGCTGCTCTATACAATGGGAACTTATTGAAGAGGCAATTGACCAATGAAGGTACACCTTTGCAGCCTACACTTGACGTCTATGTCTTTGCTCTTTTCAACGAGAATAAGAAGGCTGGACCAACTTCCGAGAGGAATTTTGGTCTATTTCAACCGGATGGAACTGTGGTTTACAATGTGGGATTGACTGGATACTCATCTGCCACAAATGTTCCCCCATCACCTCCATCACAAAGCCAAACAAAACCACCAATAACTCCATCTACTAACTCAAGTGGTGCCTCATCTTCGCCTTTAGTCCCTTCAGAAGTATCAGGCTCAACTACTAATTCGACTAATACTTCATCCCTCTCTCATCACCTCCGAAACTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

249

Amino Acids

26.45

Weight (kDa)

4.71

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 183	1e-45	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
AatII	GACGTC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	647
AciI	CCGC	2 cut(s)	183, 195
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	3 cut(s)	150, 361, 505
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	131, 424
AfiI	CCNNNNNNNGG	3 cut(s)	26, 335, 739
AgsI	TTSAA	4 cut(s)	37, 400, 469, 521
Alw26I	GTCTC	2 cut(s)	52, 311
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	374, 433
ApoI	RAATTY	3 cut(s)	150, 361, 505
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	87, 582, 719
AvaII	GGWCC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	647
BbvI	GCAGC	2 cut(s)	361, 445
BccI	CCATC	6 cut(s)	318, 337, 521, 595, 604, 637
BciVI	GTATCC	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	52, 311
BfaI	CTAG	2 cut(s)	158, 213
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	3 cut(s)	183, 375, 434
BlsI	GCNGC	3 cut(s)	184, 376, 435
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	649
BmsI	GCATC	1 cut(s)	247
BpuEI	CTTGAG	2 cut(s)	234, 625
BsaBI	GATNNNNATC	2 cut(s)	328, 565
BsaHI	GRCGYC	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 335, 739
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	562
Bse8I	GATNNNNATC	2 cut(s)	328, 565
BseGI	GGATG	5 cut(s)	191, 329, 346, 532, 713
BseJI	GATNNNNATC	2 cut(s)	328, 565
BseLI	CCNNNNNNNGG	3 cut(s)	26, 335, 739
BseNI	ACTGG	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	361, 445
BshFI	GGCC	1 cut(s)	328
BshNI	GGYRCC	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	186, 524
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	3 cut(s)	26, 335, 739
BsmAI	GTCTC	2 cut(s)	52, 311
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	2 cut(s)	183, 195
BspANI	GGCC	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	649
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	75, 535
Bst6I	CTCTTC	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	447
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	28
BstF5I	GGATG	5 cut(s)	191, 329, 346, 532, 713
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	2 cut(s)	52, 311
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	361, 445
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	5 cut(s)	191, 329, 346, 532, 713
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	130, 423
CviJI	RGCY	5 cut(s)	328, 436, 485, 606, 687
CviKI_1	RGCY	5 cut(s)	328, 436, 485, 606, 687
CviQI	GTAC	2 cut(s)	130, 423
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	115
FaiI	YATR	8 cut(s)	115, 165, 231, 246, 270, 299, 382, 453
FaqI	GGGAC	1 cut(s)	653
Fnu4HI	GCNGC	3 cut(s)	183, 375, 434
FokI	GGATG	5 cut(s)	178, 336, 353, 539, 700
Fsp4HI	GCNGC	3 cut(s)	183, 375, 434
FspBI	CTAG	2 cut(s)	158, 213
GluI	GCNGC	3 cut(s)	183, 375, 434
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	2 cut(s)	186, 524
Hin1I	GRCGYC	1 cut(s)	447
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	8, 288
HpaII	CCGG	2 cut(s)	186, 524
HphI	GGTGA	3 cut(s)	87, 582, 719
Hpy166II	GTNNAC	4 cut(s)	84, 130, 425, 541
Hpy188I	TCNGA	5 cut(s)	52, 367, 499, 676, 734
Hpy188III	TCNNGA	2 cut(s)	37, 158
Hpy8I	GTNNAC	4 cut(s)	84, 130, 425, 541
HpyAV	CCTTC	4 cut(s)	30, 413, 475, 681
HpyCH4III	ACNGT	2 cut(s)	75, 535
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	5 cut(s)	113, 226, 272, 359, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	105
LpnPI	CCDG	8 cut(s)	12, 183, 199, 306, 471, 537, 543, 669
Lsp1109I	GCAGC	2 cut(s)	361, 445
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	158, 213
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	60, 69, 93
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	2 cut(s)	412, 648
MfeI	CAATTG	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	328
MluCI	AATT	7 cut(s)	150, 220, 273, 361, 407, 505, 697
MluNI	TGGCCA	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	8 cut(s)	165, 295, 396, 495, 603, 661, 728, 740
Mox20I	TGGCCA	1 cut(s)	328
Mph1103I	ATGCAT	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	328
MseI	TTAA	2 cut(s)	276, 306
Msp20I	TGGCCA	1 cut(s)	328
MspI	CCGG	2 cut(s)	186, 524
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	649
NmuCI	GTSAC	2 cut(s)	60, 93
NsiI	ATGCAT	1 cut(s)	115
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	184, 376, 435
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	1 cut(s)	488
RsaI	GTAC	2 cut(s)	131, 424
RsaNI	GTAC	2 cut(s)	130, 423
SaqAI	TTAA	2 cut(s)	276, 306
SatI	GCNGC	3 cut(s)	183, 375, 434
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	17
SetI	ASST	8 cut(s)	22, 306, 312, 424, 430, 450, 595, 732
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	249, 640
SmoI	CTYRAG	2 cut(s)	249, 640
Sse9I	AATT	7 cut(s)	150, 220, 273, 361, 407, 505, 697
SsiI	CCGC	2 cut(s)	183, 195
SspMI	CTAG	2 cut(s)	158, 213
TaaI	ACNGT	2 cut(s)	75, 535
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	4 cut(s)	143, 291, 332, 701
TasI	AATT	7 cut(s)	150, 220, 273, 361, 407, 505, 697
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	276, 306
Tru9I	TTAA	2 cut(s)	276, 306
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	2 cut(s)	60, 93
TseI	GCWGC	2 cut(s)	374, 433
Tsp45I	GTSAC	2 cut(s)	60, 93
TspDTI	ATGAA	4 cut(s)	180, 363, 432, 702
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	3 cut(s)	150, 361, 505
XbaI	TCTAGA	1 cut(s)	157
XspI	CTAG	2 cut(s)	158, 213
ZraI	GACGTC	1 cut(s)	448
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.