Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Reverse (-)

48267842 .. 48268294

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0306300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGTCACCATTCGCTATGCATCAACAGCAACTCGCAATATTGGCTCAGCAGCAGTCTCATAATTTCACTGATGCAGCTAAATCTGCTCAGCAACCTGTGTCAAATGGAAGCAGTTTACCCGCCCATAGTTGGCCAAACATTGGCTACCAAATTCCTGGAATGATGATGCCTGGAGATGGGCAGGGTGGTATAAAGAATGTTGCACAGGCAAGGACAGCAGGACCGGCAAATCCAACAGGAAGCTCTGTTCCATATCCAACGTCTAGCTTTTATTCTATGCCCCAAGCTGATAGCCCAGTTGATGGCCTTACAACTGCTGGAGTGAACACAACTCGGTCACCGGCTGCAACGACTTCTTCTACCTCAACACAAATGGGAAAAGATTATGATTTCTCCTCCTTAACACAAGGAATGTTCGCAAAACAATGGTCGAGGACCCTTGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

150

Amino Acids

15.72

Weight (kDa)

6.81

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	143, 305
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	153
AfiI	CCNNNNNNNGG	5 cut(s)	132, 143, 179, 305, 447
AjnI	CCWGG	2 cut(s)	157, 172
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	4 cut(s)	80, 246, 270, 290
AluI	AGCT	4 cut(s)	80, 246, 270, 290
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	134, 307
ApeKI	GCWGC	3 cut(s)	52, 77, 347
ApoI	RAATTY	1 cut(s)	153
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspS9I	GGNCC	2 cut(s)	224, 438
AsuHPI	GGTGA	1 cut(s)	333
AvaII	GGWCC	2 cut(s)	224, 438
BalI	TGGCCA	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	64, 89, 334
BccI	CCATC	3 cut(s)	173, 299, 440
BciT130I	CCWGG	2 cut(s)	159, 174
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	267
BisI	GCNGC	3 cut(s)	53, 78, 348
BlpI	GCTNAGC	2 cut(s)	48, 90
BlsI	GCNGC	3 cut(s)	54, 79, 349
Bme1390I	CCNGG	2 cut(s)	159, 174
Bme18I	GGWCC	2 cut(s)	224, 438
BmgT120I	GGNCC	2 cut(s)	224, 438
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	159, 174
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	3 cut(s)	31, 64, 159
BmuI	ACTGGG	1 cut(s)	293
BpmI	CTGGAG	2 cut(s)	195, 342
Bpu1102I	GCTNAGC	2 cut(s)	48, 90
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 143, 179, 305, 447
Bse118I	RCCGGY	2 cut(s)	226, 343
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	159, 174
BseLI	CCNNNNNNNGG	5 cut(s)	132, 143, 179, 305, 447
BseMII	CTCAG	2 cut(s)	62, 104
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	388
BseXI	GCAGC	3 cut(s)	64, 89, 334
BshFI	GGCC	2 cut(s)	136, 309
BsiSI	CCGG	2 cut(s)	227, 344
BslI	CCNNNNNNNGG	5 cut(s)	132, 143, 179, 305, 447
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	136, 309
Bsp1720I	GCTNAGC	2 cut(s)	48, 90
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	136, 309
BspCNI	CTCAG	2 cut(s)	61, 103
BspLI	GGNNCC	1 cut(s)	440
BsrFI	RCCGGY	2 cut(s)	226, 343
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	2 cut(s)	226, 343
Bst2UI	CCWGG	2 cut(s)	159, 174
BstDEI	CTNAG	2 cut(s)	48, 90
BstEII	GGTNACC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 44, 86, 218, 227
BstNI	CCWGG	2 cut(s)	159, 174
BstPI	GGTNACC	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	157, 172
BstV1I	GCAGC	3 cut(s)	64, 89, 334
BstXI	CCANNNNNNTGG	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	136, 309
BtsIMutI	CAGTG	1 cut(s)	69
Cfr10I	RCCGGY	2 cut(s)	226, 343
Cfr13I	GGNCC	2 cut(s)	224, 438
DdeI	CTNAG	2 cut(s)	48, 90
EaeI	YGGCCR	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	224, 438
Eco91I	GGTNACC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	438
EcoO65I	GGTNACC	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	157, 172
EcoT22I	ATGCAT	1 cut(s)	24
FaiI	YATR	7 cut(s)	20, 63, 129, 194, 256, 281, 390
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	53, 78, 348
Fsp4HI	GCNGC	3 cut(s)	53, 78, 348
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	3 cut(s)	53, 78, 348
GsuI	CTGGAG	2 cut(s)	195, 342
HaeIII	GGCC	2 cut(s)	136, 309
HapII	CCGG	2 cut(s)	227, 344
HpaII	CCGG	2 cut(s)	227, 344
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	119, 328
Hpy8I	GTNNAC	2 cut(s)	119, 328
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	22, 77, 206, 350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 44, 86, 218, 227
HpyF3I	CTNAG	2 cut(s)	48, 90
HpySE526I	ACGT	1 cut(s)	263
Lsp1109I	GCAGC	3 cut(s)	64, 89, 334
LweI	GCATC	3 cut(s)	31, 64, 159
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	6, 339
MboII	GAAGA	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	2 cut(s)	64, 153
MluNI	TGGCCA	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	260, 284
MnlI	CCTC	3 cut(s)	376, 409, 429
Mox20I	TGGCCA	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	136
MspI	CCGG	2 cut(s)	227, 344
MspR9I	CCNGG	2 cut(s)	159, 174
MvaI	CCWGG	2 cut(s)	159, 174
MwoI	GCNNNNNNNGC	5 cut(s)	28, 44, 86, 218, 227
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	2 cut(s)	6, 339
NsiI	ATGCAT	1 cut(s)	24
PflMI	CCANNNNNTGG	2 cut(s)	143, 305
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	54, 79, 349
PpuMI	RGGWCCY	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	157, 172
PspEI	GGTNACC	1 cut(s)	339
PspGI	CCWGG	2 cut(s)	157, 172
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	2 cut(s)	224, 438
PspPPI	RGGWCCY	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	53, 78, 348
Sau96I	GGNCC	2 cut(s)	224, 438
ScrFI	CCNGG	2 cut(s)	159, 174
SetI	ASST	7 cut(s)	82, 100, 248, 266, 272, 292, 368
SfaNI	GCATC	3 cut(s)	31, 64, 159
SinI	GGWCC	2 cut(s)	224, 438
Sse9I	AATT	2 cut(s)	64, 153
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	157, 172
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	434
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	64, 153
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	6, 339
TseI	GCWGC	3 cut(s)	52, 77, 347
Tsp45I	GTSAC	2 cut(s)	6, 339
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	2 cut(s)	143, 305
VpaK11BI	GGWCC	2 cut(s)	224, 438
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.