AT4G21760

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
11561123 .. 11563950
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21760.1

Sequence Viewer

Length: 1608 bp
ATGAAAAAATCTATAGTTTATGAAATAATGGAGACTAAGTCATCAATGTACCTTTCTCAGTTCCGACTTTGGCTCTGCTTCATCATCACAACCTTGGTCTCATTGTCATCTTCAACAAGATGGTATGATGATCATATCTCATTGAAAGAGATTCACGCAGAAGAAACTTTCCATTTTCCAAAAAACTTTCTCTTTGGCACAGCTTCTTCTGCTTACCAGTATGAAGGAGCTTACTTAACTGACGGCAAAACCCTAAGCAACTGGGACGTTTTCACAAACATCTCTGGAAAAATTGCGGATGGAAGCCATGGGAAAGTCGCTGTTGATCATTACCATCGATATCCGGGAGATTTGGATCTGATGGAAGATCTTGGAGTTAATAGCTATCGACTTTCTTTATCATGGGCTCGGATTCTTCCAAAGGGAAGATTTGGAGATGTGAACATGGGTGGTATCGATCATTACAACAGAATGATCAATGATATTCTCAAAACAGGAATCGAGCCATTTGTCACGTTGACACATTACGACATTCCTCAAGAACTCGAATATAGATACGGAAGTTGGCTAAACCCCCAAATCCGGGAAGATTTCGAACATTACGCAAATATTTGCTTCCGACACTTTGGAGACAGGGTTAAATTCTGGTCTACTTTCAACGAACCAAACGTTCAAGTGATTTTGGGTTACCGGACAGGAACTTACCCGCCTTCACGTTGTTCCAAGCCTTTTGGAAACTGCTCGTGTGGCGATTCTTACATAGAGCCACTTGTAGCCGCTCACAACATTATCCTTTCACATTTAGCCGCCGTCAACTTATACCGTACAAAATTTCAGGAACAACAAAGAGGACAGATCGGTATTGTTATGAACACAATCTGGTTTGAACCGATTAGTGATTCTTTAGCAGATAGATTAGCTGCTGACAGAGCTCAAGCTTTCTATTTGACTTGGTTCTTGGATCCGGTTGTGTTTGGAAGATATCCAAGAGAAATGCGAGAAATTCTTGGCGATGATCTTCCTGAATTCACGAAGGATGATCTTAAAAGCTCCAAGAATGCATTAGACTTCATTGGGATTAATCAGTACACAAGCAGATACGCGAAAGATTGTCTGCATTCCGTATGTGAACCGGGCAAAGGAGGTTCGAGAGCTGAAGGTTTTGTCTATGCAAACGCCCTCAAAGACGGTTTACGTTTAGGAGAACCAGTAGGAATGGAGGAGATGTTGATGTATGCAACAGAGCGATACAAAAACATTACATTGTATGTAACAGAAAACGGTTTTGGTGAGAACAATACCGGAGTATTGTTAAACGATTACCAGAGAGTGAAGTTCATGAGCAACTACTTAGATGCACTCAAAAGAGCAATGAGGAAAGGAGCAGATGTAAGAGGATACTTCGCCTGGTCTTTACTAGACAACTTCGAGTGGATATCCGGTTATACCATAAGGTTCGGTATGTACCATGTCGATTTCAGTACTCAAGAGAGAACCCCGAGACTGTCAGCTTCTTGGTACAAAAACTTCATCTTCCAGCACAGAGCTCTATCAAAAGATGATTGGTGCCTGAAACAAAAGGAAGACACAAATTTCTTTCTTATTTGA

Protein Analysis

535

Amino Acids

61.96

Weight (kDa)

6.23

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 58 - 514 3.5e-147 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1566
AccBSI CCGCTC 1 cut(s) 779
AccI GTMKAC 1 cut(s) 650
AccII CGCG 1 cut(s) 1103
AciI CCGC 4 cut(s) 296, 707, 777, 807
AclI AACGTT 1 cut(s) 669
AclWI GGATC 3 cut(s) 363, 956, 969
AcsI RAATTY 5 cut(s) 641, 830, 1002, 1025, 1591
AcuI CTGAAG 1 cut(s) 1176
AfaI GTAC 6 cut(s) 50, 826, 1088, 1466, 1483, 1520
AfiI CCNNNNNNNGG 3 cut(s) 582, 583, 1139
AgsI TTSAA 5 cut(s) 114, 145, 658, 674, 887
AjnI CCWGG 1 cut(s) 1406
AjuI GAANNNNNNNTTGG 2 cut(s) 1269, 1301
Alw21I GWGCWC 2 cut(s) 934, 1549
Alw26I GTCTC 4 cut(s) 26, 103, 624, 1495
AlwI GGATC 3 cut(s) 363, 956, 969
Ama87I CYCGRG 1 cut(s) 1498
ApeKI GCWGC 1 cut(s) 920
ApoI RAATTY 5 cut(s) 641, 830, 1002, 1025, 1591
AseI ATTAAT 1 cut(s) 1080
AsuC2I CCSGG 3 cut(s) 345, 584, 1134
AsuHPI GGTGA 1 cut(s) 1301
AsuII TTCGAA 1 cut(s) 594
AvaI CYCGRG 1 cut(s) 1498
BaeI ACNNNNGTAYC 2 cut(s) 547, 580
BamHI GGATCC 1 cut(s) 961
BanI GGYRCC 1 cut(s) 1566
BanII GRGCYC 3 cut(s) 409, 934, 1549
BarI GAAGNNNNNNTAC 2 cut(s) 1511, 1543
BauI CACGAG 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 1590
Bbv12I GWGCWC 2 cut(s) 934, 1549
BbvI GCAGC 1 cut(s) 907
BccI CCATC 4 cut(s) 114, 293, 342, 355
BceAI ACGGC 2 cut(s) 259, 794
BciT130I CCWGG 1 cut(s) 1408
BciVI GTATCC 1 cut(s) 1391
BclI TGATCA 3 cut(s) 130, 325, 474
BcnI CCSGG 3 cut(s) 345, 584, 1134
BcoDI GTCTC 4 cut(s) 26, 103, 624, 1495
BfaI CTAG 1 cut(s) 1418
BfmI CTRYAG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 1391
BglII AGATCT 1 cut(s) 367
BisI GCNGC 3 cut(s) 777, 807, 921
BlsI GCNGC 3 cut(s) 778, 808, 922
BmcAI AGTACT 1 cut(s) 1483
Bme1390I CCNGG 4 cut(s) 345, 584, 1134, 1408
BmeT110I CYCGRG 1 cut(s) 1498
BmiI GGNNCC 2 cut(s) 963, 1568
BmrFI CCNGG 4 cut(s) 345, 584, 1134, 1408
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 1345
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 1590
Bpu10I CCTNAGC 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 594
BpuEI CTTGAG 3 cut(s) 522, 918, 1470
BpuMI CCSGG 3 cut(s) 345, 584, 1134
Bsa29I ATCGAT 2 cut(s) 337, 456
BsaBI GATNNNNATC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 93, 307
BsaWI WCCGGW 4 cut(s) 690, 964, 1301, 1439
Bsc4I CCNNNNNNNGG 3 cut(s) 582, 583, 1139
Bse1I ACTGG 3 cut(s) 217, 266, 1208
Bse3DI GCAATG 1 cut(s) 1377
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 1408
BseCI ATCGAT 2 cut(s) 337, 456
BseDI CCNNGG 2 cut(s) 93, 307
BseGI GGATG 2 cut(s) 304, 1042
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 3 cut(s) 582, 583, 1139
BseMI GCAATG 1 cut(s) 1377
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 217, 266, 1208
BseRI GAGGAG 1 cut(s) 1235
BseXI GCAGC 1 cut(s) 907
Bsh1236I CGCG 1 cut(s) 1103
BshNI GGYRCC 1 cut(s) 1566
BshVI ATCGAT 2 cut(s) 337, 456
BsiHKAI GWGCWC 2 cut(s) 934, 1549
BsiHKCI CYCGRG 1 cut(s) 1498
BsiSI CCGG 7 cut(s) 344, 583, 691, 965, 1133, 1302, 1440
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 3 cut(s) 582, 583, 1139
BsmAI GTCTC 4 cut(s) 26, 103, 624, 1495
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 2 cut(s) 1063, 1117
Bso31I GGTCTC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 1498
Bsp119I TTCGAA 1 cut(s) 594
Bsp1286I GDGCHC 3 cut(s) 409, 934, 1549
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 4 cut(s) 296, 707, 777, 807
BspCNI CTCAG 1 cut(s) 70
BspDI ATCGAT 2 cut(s) 337, 456
BspFNI CGCG 1 cut(s) 1103
BspHI TCATGA 1 cut(s) 1338
BspLI GGNNCC 2 cut(s) 963, 1568
BspPI GGATC 3 cut(s) 363, 956, 969
BspT104I TTCGAA 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 1566
BspTNI GGTCTC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 779
BsrDI GCAATG 1 cut(s) 1377
BsrI ACTGG 3 cut(s) 217, 266, 1208
BssECI CCNNGG 2 cut(s) 93, 307
BssSI CACGAG 1 cut(s) 742
BssT1I CCWWGG 2 cut(s) 93, 307
Bst2BI CACGAG 1 cut(s) 742
Bst2UI CCWGG 1 cut(s) 1408
Bst4CI ACNGT 4 cut(s) 824, 1190, 1283, 1506
BstBI TTCGAA 1 cut(s) 594
BstDEI CTNAG 4 cut(s) 36, 57, 254, 1351
BstDSI CCRYGG 1 cut(s) 307
BstEII GGTNACC 1 cut(s) 686
BstF5I GGATG 2 cut(s) 304, 1042
BstFNI CGCG 1 cut(s) 1103
BstMAI GTCTC 4 cut(s) 26, 103, 624, 1495
BstMWI GCNNNNNNNGC 3 cut(s) 209, 747, 929
BstNI CCWGG 1 cut(s) 1408
BstPI GGTNACC 1 cut(s) 686
BstSCI CCNGG 4 cut(s) 343, 582, 1132, 1406
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 1 cut(s) 1103
BstV1I GCAGC 1 cut(s) 907
BstV2I GAAGAC 1 cut(s) 1590
BstX2I RGATCY 3 cut(s) 355, 367, 961
BstYI RGATCY 3 cut(s) 355, 367, 961
Bsu15I ATCGAT 2 cut(s) 337, 456
BsuI GTATCC 1 cut(s) 1391
BsuTUI ATCGAT 2 cut(s) 337, 456
BtgI CCRYGG 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 1026
BtsCI GGATG 2 cut(s) 304, 1042
CciI TCATGA 1 cut(s) 1338
ClaI ATCGAT 2 cut(s) 337, 456
Csp6I GTAC 6 cut(s) 49, 825, 1087, 1465, 1482, 1519
CviAII CATG 5 cut(s) 308, 402, 445, 1339, 1469
CviQI GTAC 6 cut(s) 49, 825, 1087, 1465, 1482, 1519
DdeI CTNAG 4 cut(s) 36, 57, 254, 1351
Ecl136II GAGCTC 2 cut(s) 932, 1547
Eco130I CCWWGG 2 cut(s) 93, 307
Eco24I GRGCYC 3 cut(s) 409, 934, 1549
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 3 cut(s) 341, 983, 1437
Eco53kI GAGCTC 2 cut(s) 932, 1547
Eco57I CTGAAG 1 cut(s) 1176
Eco88I CYCGRG 1 cut(s) 1498
Eco91I GGTNACC 1 cut(s) 686
EcoICRI GAGCTC 2 cut(s) 932, 1547
EcoO65I GGTNACC 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 1025
EcoRII CCWGG 1 cut(s) 1406
EcoRV GATATC 3 cut(s) 341, 983, 1437
EcoT14I CCWWGG 2 cut(s) 93, 307
EcoT22I ATGCAT 1 cut(s) 1063
EcoT38I GRGCYC 3 cut(s) 409, 934, 1549
ErhI CCWWGG 2 cut(s) 93, 307
FaeI CATG 5 cut(s) 311, 405, 448, 1342, 1472
FaqI GGGAC 1 cut(s) 278
FatI CATG 5 cut(s) 307, 401, 444, 1338, 1468
FauI CCCGC 1 cut(s) 714
FbaI TGATCA 3 cut(s) 130, 325, 474
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 3 cut(s) 777, 807, 921
FokI GGATG 2 cut(s) 311, 1049
FriOI GRGCYC 3 cut(s) 409, 934, 1549
Fsp4HI GCNGC 3 cut(s) 777, 807, 921
FspBI CTAG 1 cut(s) 1418
GluI GCNGC 3 cut(s) 777, 807, 921
HapII CCGG 7 cut(s) 344, 583, 691, 965, 1133, 1302, 1440
Hin1II CATG 5 cut(s) 311, 405, 448, 1342, 1472
HincII GTYRAC 2 cut(s) 519, 814
HindII GTYRAC 2 cut(s) 519, 814
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 5 cut(s) 151, 412, 498, 752, 899
HpaII CCGG 7 cut(s) 344, 583, 691, 965, 1133, 1302, 1440
HphI GGTGA 1 cut(s) 1301
Hpy166II GTNNAC 7 cut(s) 442, 519, 651, 814, 1089, 1130, 1193
Hpy188I TCNGA 4 cut(s) 65, 360, 411, 620
Hpy188III TCNNGA 8 cut(s) 285, 539, 836, 1022, 1030, 1149, 1339, 1487
Hpy8I GTNNAC 7 cut(s) 442, 519, 651, 814, 1089, 1130, 1193
HpyAV CCTTC 4 cut(s) 218, 720, 1027, 1151
HpyCH4III ACNGT 4 cut(s) 824, 1190, 1283, 1506
HpyCH4IV ACGT 5 cut(s) 267, 515, 669, 715, 1195
HpyCH4V TGCA 5 cut(s) 1061, 1117, 1172, 1238, 1358
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 747, 929
HpyF3I CTNAG 4 cut(s) 36, 57, 254, 1351
HpySE526I ACGT 5 cut(s) 267, 515, 669, 715, 1195
Hsp92II CATG 5 cut(s) 311, 405, 448, 1342, 1472
Ksp22I TGATCA 3 cut(s) 130, 325, 474
LmnI GCTCC 3 cut(s) 227, 1055, 1382
Lsp1109I GCAGC 1 cut(s) 907
LweI GCATC 1 cut(s) 1345
MaeI CTAG 1 cut(s) 1418
MaeII ACGT 5 cut(s) 267, 515, 669, 715, 1195
MaeIII GTNAC 3 cut(s) 511, 686, 1270
MbiI CCGCTC 1 cut(s) 779
MflI RGATCY 3 cut(s) 355, 367, 961
MhlI GDGCHC 3 cut(s) 409, 934, 1549
MluCI AATT 6 cut(s) 291, 641, 830, 1002, 1025, 1591
MmeI TCCRAC 2 cut(s) 88, 643
MnlI CCTC 7 cut(s) 546, 842, 1136, 1190, 1213, 1368, 1388
Mph1103I ATGCAT 1 cut(s) 1063
MseI TTAA 6 cut(s) 236, 378, 639, 1044, 1080, 1313
MspI CCGG 7 cut(s) 344, 583, 691, 965, 1133, 1302, 1440
MspR9I CCNGG 4 cut(s) 345, 584, 1134, 1408
Mva1269I GAATGC 2 cut(s) 1063, 1117
MvaI CCWGG 1 cut(s) 1408
MvnI CGCG 1 cut(s) 1103
MwoI GCNNNNNNNGC 3 cut(s) 209, 747, 929
NciI CCSGG 3 cut(s) 345, 584, 1134
NcoI CCATGG 1 cut(s) 307
NlaIII CATG 5 cut(s) 311, 405, 448, 1342, 1472
NlaIV GGNNCC 2 cut(s) 963, 1568
NmuCI GTSAC 1 cut(s) 511
NsiI ATGCAT 1 cut(s) 1063
NspV TTCGAA 1 cut(s) 594
PagI TCATGA 1 cut(s) 1338
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PctI GAATGC 2 cut(s) 1063, 1117
PfeI GAWTC 5 cut(s) 151, 412, 498, 752, 899
PflFI GACNNNGTC 1 cut(s) 37
PfoI TCCNGGA 2 cut(s) 343, 582
PkrI GCNGC 3 cut(s) 778, 808, 922
PshBI ATTAAT 1 cut(s) 1080
Psp124BI GAGCTC 2 cut(s) 934, 1549
Psp1406I AACGTT 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 1406
PspEI GGTNACC 1 cut(s) 686
PspGI CCWGG 1 cut(s) 1406
PspN4I GGNNCC 2 cut(s) 963, 1568
PsuI RGATCY 3 cut(s) 355, 367, 961
PsyI GACNNNGTC 1 cut(s) 37
RsaI GTAC 6 cut(s) 50, 826, 1088, 1466, 1483, 1520
RsaNI GTAC 6 cut(s) 49, 825, 1087, 1465, 1482, 1519
SacI GAGCTC 2 cut(s) 934, 1549
SaqAI TTAA 6 cut(s) 236, 378, 639, 1044, 1080, 1313
SatI GCNGC 3 cut(s) 777, 807, 921
ScaI AGTACT 1 cut(s) 1483
ScrFI CCNGG 4 cut(s) 345, 584, 1134, 1408
SduI GDGCHC 3 cut(s) 409, 934, 1549
SfaNI GCATC 1 cut(s) 1345
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 594
SmlI CTYRAG 3 cut(s) 537, 933, 1485
SmoI CTYRAG 3 cut(s) 537, 933, 1485
Sse9I AATT 6 cut(s) 291, 641, 830, 1002, 1025, 1591
SsiI CCGC 4 cut(s) 296, 707, 777, 807
SspI AATATT 1 cut(s) 610
SspMI CTAG 1 cut(s) 1418
SstI GAGCTC 2 cut(s) 934, 1549
StyD4I CCNGG 4 cut(s) 343, 582, 1132, 1406
StyI CCWWGG 2 cut(s) 93, 307
TaaI ACNGT 4 cut(s) 824, 1190, 1283, 1506
TaiI ACGT 5 cut(s) 270, 518, 672, 718, 1198
TaqI TCGA 9 cut(s) 337, 388, 456, 501, 546, 594, 1148, 1428, 1473
TasI AATT 6 cut(s) 291, 641, 830, 1002, 1025, 1591
TatI WGTACW 2 cut(s) 1086, 1481
TauI GCSGC 2 cut(s) 779, 809
TfiI GAWTC 5 cut(s) 151, 412, 498, 752, 899
Tru1I TTAA 6 cut(s) 236, 378, 639, 1044, 1080, 1313
Tru9I TTAA 6 cut(s) 236, 378, 639, 1044, 1080, 1313
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 1 cut(s) 920
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 8 cut(s) 17, 36, 70, 237, 884, 1060, 1327, 1519
TspGWI ACGGA 2 cut(s) 573, 1111
Tth111I GACNNNGTC 1 cut(s) 37
VspI ATTAAT 1 cut(s) 1080
XapI RAATTY 5 cut(s) 641, 830, 1002, 1025, 1591
XmiI GTMKAC 1 cut(s) 650
XspI CTAG 1 cut(s) 1418
ZrmI AGTACT 1 cut(s) 1483
Zsp2I ATGCAT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.