Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Forward (+)

39981875 .. 39984849

Gene Structure 2975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1316300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAGCATTTTTCAGTACTTCATGTTTTCCTTATTGTTGATATATGCTTTGCAATTCCAATGGTATCTTGCAATGACATATTTTTTAAAGGAAACTCAGCTTCATCCCCTTTCCCAAGTAACTTCCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAGGGAGCTTATCTGAATGATGGAAAAAGCCTAAGCAACTGGGATGTTTTCACTCATAAGCCTGGTCATATTTCAGATGGAACTAATGGAGATATCGCTGGTGACCAGTATCATCTTTATCTGGAAGATTTGGATCTCATGAATTACATTGGAGTCAATACTTACCGGTTTTCCATATCATGGGCAAGAGTTTTACCTAAAGGAAGATTTGGGAAAGTGAATCGAGCTGGCATCAATCACTATAACAAGTTAATCGACGCTCTTTTGCGTAGAGGAATCCAGCCGTTCGTGACGTTGACTCACTACGACATTCCACAGGAACTCGAAGACAGATATGGAGCTTGGCTAAGTTCCCAAGTGCAGAAGGATTTCCTATATTATGCAAATACATGTTTCAAATTCTTTGGAGACCGAGTGAAGTACTGGGTGACATTCAATGAGCCGAATGTAGCAGTTATTCGAGGCTATAGGTCGGGAATGTACCCGCCCGCTCGCTGCTCTAGTCCATTTGGGAATTGTACTAGTGGGGATTCAGAGAGAGAGCCTTTCATTGCAGCTCATAACATCATTCTATCCCATGCAGCTGCTGTCCATCTATACAGAACCAAATATCATAAAAAACAAGGAGGTAGCATTGGAATTGTTATGAATGCCGTATGGTATGAACCGATCAGCAGCTCCTTAGAAGACAGATTAGCAGCTGAGAGGGCTATATCTTTCTATATGAACTGGTTCTTAGACCCAATTTTACAAGGGAAATATCCTGCAGAAATGCGTGAGCTTCTAGGATCTGATTTGCCAGCATTTTCGAAATCTGATGTGGAGATGCTGAAGATGAATGGATTGGACTTCATTGGCATCAATCACTATACGAGCTTTTACTCAAAAGACTGTATGTTCTCTGCATGTGAACCAGGACCAGGGGCTTCAAGGACGGAGGGTTTCGCGTTGCGAACTGCACAGAAAGACGGAGTCTTCATTGGAGAACCAGTACGCAAACACATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

390

Amino Acids

43.92

Weight (kDa)

6.67

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	36 - 355	2e-110	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccBSI	CCGCTC	1 cut(s)	650
AccII	CGCG	1 cut(s)	1106
AciI	CCGC	2 cut(s)	644, 648
AclWI	GGATC	2 cut(s)	300, 955
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	1010
AfaI	GTAC	5 cut(s)	18, 581, 641, 679, 1152
AfiI	CCNNNNNNNGG	2 cut(s)	339, 1079
AflIII	ACRYGT	1 cut(s)	548
AgeI	ACCGGT	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	556, 595, 1089
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	3 cut(s)	220, 1072, 1078
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	300, 955
AlwNI	CAGNNNCTG	1 cut(s)	746
ApeKI	GCWGC	6 cut(s)	654, 713, 740, 743, 834, 857
ApoI	RAATTY	1 cut(s)	557
AsiGI	ACCGGT	1 cut(s)	324
Asp700I	GAANNNNTTC	2 cut(s)	527, 890
AspS9I	GGNCC	1 cut(s)	1076
AsuHPI	GGTGA	2 cut(s)	272, 598
AsuII	TTCGAA	1 cut(s)	968
AvaII	GGWCC	1 cut(s)	1076
BbsI	GAAGAC	3 cut(s)	492, 852, 1126
BbvI	GCAGC	6 cut(s)	641, 725, 730, 752, 846, 869
BccI	CCATC	3 cut(s)	173, 230, 759
BceAI	ACGGC	2 cut(s)	427, 797
BciT130I	CCWGG	3 cut(s)	222, 1074, 1080
BcoDI	GTCTC	1 cut(s)	561
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	3 cut(s)	660, 681, 944
BfmI	CTRYAG	2 cut(s)	625, 924
BisI	GCNGC	6 cut(s)	655, 714, 741, 744, 835, 858
BlsI	GCNGC	6 cut(s)	656, 715, 742, 745, 836, 859
BmcAI	AGTACT	2 cut(s)	18, 581
Bme1390I	CCNGG	3 cut(s)	222, 1074, 1080
Bme18I	GGWCC	1 cut(s)	1076
BmgT120I	GGNCC	1 cut(s)	1076
BmrFI	CCNGG	3 cut(s)	222, 1074, 1080
BmrI	ACTGGG	2 cut(s)	208, 592
BmsI	GCATC	4 cut(s)	149, 399, 975, 1026
BmuI	ACTGGG	2 cut(s)	208, 592
BpiI	GAAGAC	3 cut(s)	492, 852, 1126
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	968
BsaBI	GATNNNNATC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	1079
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	4 cut(s)	558, 588, 1134, 1164
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 1079
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	5 cut(s)	203, 265, 587, 893, 1148
Bse3DI	GCAATG	2 cut(s)	79, 708
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	222, 1074, 1080
BseDI	CCNNGG	1 cut(s)	1079
BseGI	GGATG	3 cut(s)	104, 140, 208
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	339, 1079
BseMI	GCAATG	2 cut(s)	79, 708
BseMII	CTCAG	2 cut(s)	111, 852
BseNI	ACTGG	5 cut(s)	203, 265, 587, 893, 1148
BseXI	GCAGC	6 cut(s)	641, 725, 730, 752, 846, 869
BsgI	GTGCAG	2 cut(s)	539, 1101
Bsh1236I	CGCG	1 cut(s)	1106
BshTI	ACCGGT	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	339, 1079
BsmAI	GTCTC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	814
Bso31I	GGTCTC	1 cut(s)	561
Bsp119I	TTCGAA	1 cut(s)	968
Bsp143I	GATC	3 cut(s)	292, 828, 947
BspACI	CCGC	2 cut(s)	644, 648
BspCNI	CTCAG	2 cut(s)	110, 853
BspFNI	CGCG	1 cut(s)	1106
BspHI	TCATGA	2 cut(s)	297, 1166
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	2 cut(s)	300, 955
BspT104I	TTCGAA	1 cut(s)	968
BspTNI	GGTCTC	1 cut(s)	561
BsrBI	CCGCTC	1 cut(s)	650
BsrDI	GCAATG	2 cut(s)	79, 708
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	5 cut(s)	203, 265, 587, 893, 1148
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	1079
BssMI	GATC	3 cut(s)	292, 828, 947
Bst2UI	CCWGG	3 cut(s)	222, 1074, 1080
Bst4CI	ACNGT	1 cut(s)	1052
Bst6I	CTCTTC	1 cut(s)	151
BstBI	TTCGAA	1 cut(s)	968
BstC8I	GCNNGC	4 cut(s)	388, 648, 652, 960
BstDEI	CTNAG	6 cut(s)	97, 191, 506, 841, 861, 895
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	104, 140, 208
BstFNI	CGCG	1 cut(s)	1106
BstKTI	GATC	3 cut(s)	295, 831, 950
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	3 cut(s)	292, 828, 947
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	3 cut(s)	222, 1074, 1080
BstNSI	RCATGY	2 cut(s)	552, 1068
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	220, 1072, 1078
BstSFI	CTRYAG	2 cut(s)	625, 924
BstUI	CGCG	1 cut(s)	1106
BstV1I	GCAGC	6 cut(s)	641, 725, 730, 752, 846, 869
BstV2I	GAAGAC	3 cut(s)	492, 852, 1126
BstX2I	RGATCY	2 cut(s)	292, 947
BstYI	RGATCY	2 cut(s)	292, 947
BtsCI	GGATG	3 cut(s)	104, 140, 208
Cac8I	GCNNGC	4 cut(s)	388, 648, 652, 960
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	2 cut(s)	297, 1166
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	1076
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	5 cut(s)	17, 580, 640, 678, 1151
CspAI	ACCGGT	1 cut(s)	324
CviAII	CATG	7 cut(s)	23, 298, 339, 549, 737, 1065, 1167
CviQI	GTAC	5 cut(s)	17, 580, 640, 678, 1151
DdeI	CTNAG	6 cut(s)	97, 191, 506, 841, 861, 895
DpnI	GATC	3 cut(s)	294, 830, 949
DpnII	GATC	3 cut(s)	292, 828, 947
DraI	TTTAAA	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	1076
Eco57I	CTGAAG	1 cut(s)	1010
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	3 cut(s)	220, 1072, 1078
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	7 cut(s)	26, 301, 342, 552, 740, 1068, 1170
FatI	CATG	7 cut(s)	22, 297, 338, 548, 736, 1064, 1166
FauI	CCCGC	2 cut(s)	651, 655
Fnu4HI	GCNGC	6 cut(s)	655, 714, 741, 744, 835, 858
FokI	GGATG	3 cut(s)	91, 127, 215
Fsp4HI	GCNGC	6 cut(s)	655, 714, 741, 744, 835, 858
FspBI	CTAG	3 cut(s)	660, 681, 944
GluI	GCNGC	6 cut(s)	655, 714, 741, 744, 835, 858
HapII	CCGG	1 cut(s)	325
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	7 cut(s)	26, 301, 342, 552, 740, 1068, 1170
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HinfI	GANTC	6 cut(s)	312, 379, 435, 457, 689, 1131
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	2 cut(s)	272, 598
Hpy166II	GTNNAC	2 cut(s)	456, 1070
Hpy188I	TCNGA	5 cut(s)	174, 235, 694, 952, 976
Hpy188III	TCNNGA	5 cut(s)	281, 298, 448, 633, 1167
Hpy8I	GTNNAC	2 cut(s)	456, 1070
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	1052
HpyCH4IV	ACGT	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	6 cut(s)	97, 191, 506, 841, 861, 895
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	7 cut(s)	26, 301, 342, 552, 740, 1068, 1170
Kzo9I	GATC	3 cut(s)	292, 828, 947
LmnI	GCTCC	4 cut(s)	4, 164, 497, 842
Lsp1109I	GCAGC	6 cut(s)	641, 725, 730, 752, 846, 869
LweI	GCATC	4 cut(s)	149, 399, 975, 1026
MaeI	CTAG	3 cut(s)	660, 681, 944
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	4 cut(s)	119, 260, 448, 586
MalI	GATC	3 cut(s)	294, 830, 949
MbiI	CCGCTC	1 cut(s)	650
MboI	GATC	3 cut(s)	292, 828, 947
MboII	GAAGA	7 cut(s)	138, 296, 375, 497, 857, 1003, 1126
MflI	RGATCY	2 cut(s)	292, 947
MluCI	AATT	6 cut(s)	54, 301, 557, 673, 798, 903
MlyI	GAGTC	3 cut(s)	321, 451, 1140
MnlI	CCTC	8 cut(s)	137, 154, 154, 425, 614, 779, 858, 1090
MroXI	GAANNNNTTC	2 cut(s)	527, 890
MseI	TTAA	2 cut(s)	87, 410
MspA1I	CMGCKG	2 cut(s)	743, 860
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	3 cut(s)	222, 1074, 1080
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	3 cut(s)	222, 1074, 1080
MvnI	CGCG	1 cut(s)	1106
MwoI	GCNNNNNNNGC	1 cut(s)	866
NdeII	GATC	3 cut(s)	292, 828, 947
NlaIII	CATG	7 cut(s)	26, 301, 342, 552, 740, 1068, 1170
NmuCI	GTSAC	3 cut(s)	260, 448, 586
NspI	RCATGY	2 cut(s)	552, 1068
NspV	TTCGAA	1 cut(s)	968
PagI	TCATGA	2 cut(s)	297, 1166
PciI	ACATGT	1 cut(s)	548
PctI	GAATGC	1 cut(s)	814
PdmI	GAANNNNTTC	2 cut(s)	527, 890
PfeI	GAWTC	3 cut(s)	379, 435, 689
PflFI	GACNNNGTC	1 cut(s)	1130
PflMI	CCANNNNNTGG	1 cut(s)	339
PinAI	ACCGGT	1 cut(s)	324
PkrI	GCNGC	6 cut(s)	656, 715, 742, 745, 836, 859
PleI	GAGTC	3 cut(s)	320, 451, 1139
PpsI	GAGTC	3 cut(s)	320, 451, 1139
PscI	ACATGT	1 cut(s)	548
Psp6I	CCWGG	3 cut(s)	220, 1072, 1078
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	3 cut(s)	220, 1072, 1078
PspPI	GGNCC	1 cut(s)	1076
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	2 cut(s)	292, 947
PsyI	GACNNNGTC	1 cut(s)	1130
PvuII	CAGCTG	2 cut(s)	743, 860
RsaI	GTAC	5 cut(s)	18, 581, 641, 679, 1152
RsaNI	GTAC	5 cut(s)	17, 580, 640, 678, 1151
SaqAI	TTAA	2 cut(s)	87, 410
SatI	GCNGC	6 cut(s)	655, 714, 741, 744, 835, 858
Sau3AI	GATC	3 cut(s)	292, 828, 947
Sau96I	GGNCC	1 cut(s)	1076
ScaI	AGTACT	2 cut(s)	18, 581
SchI	GAGTC	3 cut(s)	321, 451, 1140
ScrFI	CCNGG	3 cut(s)	222, 1074, 1080
SfaNI	GCATC	4 cut(s)	149, 399, 975, 1026
SfcI	CTRYAG	2 cut(s)	625, 924
SfuI	TTCGAA	1 cut(s)	968
SinI	GGWCC	1 cut(s)	1076
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	6 cut(s)	54, 301, 557, 673, 798, 903
SsiI	CCGC	2 cut(s)	644, 648
SspMI	CTAG	3 cut(s)	660, 681, 944
StyD4I	CCNGG	3 cut(s)	220, 1072, 1078
TaaI	ACNGT	1 cut(s)	1052
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	5 cut(s)	382, 414, 483, 619, 968
TaqII	GACCGA	1 cut(s)	585
TasI	AATT	6 cut(s)	54, 301, 557, 673, 798, 903
TatI	WGTACW	3 cut(s)	16, 579, 677
TfiI	GAWTC	3 cut(s)	379, 435, 689
Tru1I	TTAA	2 cut(s)	87, 410
Tru9I	TTAA	2 cut(s)	87, 410
TseFI	GTSAC	3 cut(s)	260, 448, 586
TseI	GCWGC	6 cut(s)	654, 713, 740, 743, 834, 857
Tsp45I	GTSAC	3 cut(s)	260, 448, 586
TspGWI	ACGGA	2 cut(s)	1109, 1143
Tth111I	GACNNNGTC	1 cut(s)	1130
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	1076
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	2 cut(s)	552, 1068
XmnI	GAANNNNTTC	2 cut(s)	527, 890
XspI	CTAG	3 cut(s)	660, 681, 944
ZrmI	AGTACT	2 cut(s)	18, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.