MD05G1342500.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
46288130 .. 46293147
5018 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1342500.v1.1.491

Sequence Viewer

Length: 1590 bp
ATGGGCCTTCGGATCCAAAAATCCAACATATATGCCATCTCATTCATTCATACTCTGAAACTTATAATGGAGCATTTTTCAGCACTTCATGTTTTCCTTATTGTTGATATATGCTTTGCGATTCCCATGGTGTCTTGCAATCACATATTTTTGAAAGGAAACTCAGCCACATCCCCTTTCCCAAGTAACTTCCTCTTTGGAACTGCATCCTCTTCTTACCAGTTTGAGGGAGCTTTTCTGACTGATGGAAAAGGCCTAAGCAACTGGGATGTTTTTACTCATAAGCCTGGTCATATTTCGGATGGAACTAATGGAGATATCGCTGATGACCAGTATCATCTTTATTTGGAAGATTTGGATCTCATGAATTACATTGGAGTCAATACTTACCGGTTTTCCATATCATGGGCAAGAGTTTTACCTAAAGGAAGATTTGGGAAAGTGAATCGAGCTGGCATCAATCACTATGACAAGTTCATCGACGCTCTTCTGCGTAGAGGAATCCATCCCTTCGTGACGTTGACTCACTACGACATTCCACAGGAACTTGAAGACAGATATGGAGCTTGGCTAAGTCCCCAACTGCAGGAGGATTTCGTATATTATGCAAATACATGTTTCAAATTCTTTGGGGACCGAGTGAAGTACTGGGTGACATTCAATGAGCCGAATGTAGTAGTTATTCGGGGCTATAGGTCGGGAATGTACCCGCCCGCTCGCTGCTCTAGACCCTTTGGGAATTGTACTAGTGGGGATTCAGAGAGAGAGCCTTTCATAGCAGCTCATAACATCATTCTATCCCATGCAGCTGCCGTCCATCTATACAGAACCAAATATCAGAAAAAACAAAGAGGTAGCATTGGAATTGTTATGAATGCCTTATGGTATGAACCGATCAGCAACTCCTTAGAAGACAAATCAGCAGCTGAGAGGGCTATGTCTTTCTATATGAACTGGTTCTTAGATCCCGTTCTACAAGGGAAATATCCTGCAGAAATGCGTGAGATTCTAGGAGCTGATTTGCCGGCATTTTCGAAATCTGATGTGGAGATGCTGAAGAAGAATGGATTGGACTTCATTGGCATCAATCACTATTCACTATACGAGCTTTTACTCAAAAGATTGACGGAGGGTTTCGCATTGCGAACTGCACAGAAAGACGGAGTCTTCATTGGAGAACCAACTTCGGTTGACTGGCTGTATGTCTACCCTCAAGGAATGGAAAAGATCGTAACATACGTAAAAGACAGATACAACAACACACCAATCTTCATCACAGAAAATGGGTTTGGTGAGGTAGGGAATCCGAATTCCTGCAATGAAGAATTACTGAATGATGTCAAGAGAGTGGAGTACATGAGGTCTTACTTACATGCACTTGCAGAAGGAATTAGAAAAGGAGCAGATGTAAGAGGGTACTTGGTGTGGTCGTTGCTGGACAACTTCGAGTGGACGAGTGGCTATACGGTTCGGTTTGGACTTCACCGTGTTGATTACGCCACTCTCAAGAGGACTCAAAGACTATCAGCAGCTTGGTACAAGCAATTTGTATCTAATCATACGGTGCAAACACACCTACCCACAAACTGA

Protein Analysis

530

Amino Acids

60.67

Weight (kDa)

7.68

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 58 - 520 7.9e-153 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 405
AccBSI CCGCTC 1 cut(s) 716
AccI GTMKAC 1 cut(s) 1206
AciI CCGC 2 cut(s) 710, 714
AclWI GGATC 4 cut(s) 7, 20, 366, 959
AcsI RAATTY 2 cut(s) 623, 1309
AcuI CTGAAG 1 cut(s) 1076
AfaI GTAC 6 cut(s) 647, 707, 745, 1355, 1418, 1538
AfiI CCNNNNNNNGG 3 cut(s) 226, 405, 586
AflIII ACRYGT 1 cut(s) 614
AgeI ACCGGT 1 cut(s) 390
AgsI TTSAA 4 cut(s) 154, 551, 622, 661
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 4 cut(s) 1052, 1084, 1272, 1304
AluBI AGCT 9 cut(s) 233, 452, 566, 782, 809, 926, 1016, 1108, 1532
AluI AGCT 9 cut(s) 233, 452, 566, 782, 809, 926, 1016, 1108, 1532
AlwI GGATC 4 cut(s) 7, 20, 366, 959
AlwNI CAGNNNCTG 1 cut(s) 926
AoxI GGCC 2 cut(s) 4, 253
ApeKI GCWGC 6 cut(s) 720, 779, 806, 809, 923, 1529
ApoI RAATTY 2 cut(s) 623, 1309
AsiGI ACCGGT 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 956
AspS9I GGNCC 2 cut(s) 4, 634
AsuHPI GGTGA 3 cut(s) 664, 1304, 1475
AsuII TTCGAA 1 cut(s) 1034
AvaII GGWCC 1 cut(s) 634
BamHI GGATCC 1 cut(s) 12
BbsI GAAGAC 3 cut(s) 558, 918, 1159
BbvI GCAGC 6 cut(s) 707, 791, 796, 818, 935, 1541
BccI CCATC 5 cut(s) 44, 239, 296, 513, 825
BceAI ACGGC 1 cut(s) 797
BciT130I CCWGG 1 cut(s) 288
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 3 cut(s) 726, 747, 1010
BfmI CTRYAG 3 cut(s) 584, 691, 990
BisI GCNGC 6 cut(s) 721, 780, 807, 810, 924, 1530
BlsI GCNGC 6 cut(s) 722, 781, 808, 811, 925, 1531
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 4, 634
BmiI GGNNCC 2 cut(s) 14, 635
BmrFI CCNGG 1 cut(s) 288
BmrI ACTGGG 2 cut(s) 274, 658
BmsI GCATC 4 cut(s) 215, 465, 1041, 1092
BmuI ACTGGG 2 cut(s) 274, 658
BpiI GAAGAC 3 cut(s) 558, 918, 1159
Bpu10I CCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 1034
BpuEI CTTGAG 2 cut(s) 1197, 1490
BsaAI YACGTR 1 cut(s) 1240
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 1392, 1422
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 405, 586
Bse118I RCCGGY 2 cut(s) 390, 1024
Bse1I ACTGG 6 cut(s) 220, 269, 331, 653, 959, 1199
Bse3DI GCAATG 2 cut(s) 1139, 1324
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 5 cut(s) 170, 206, 274, 307, 505
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 3 cut(s) 226, 405, 586
BseMI GCAATG 2 cut(s) 1139, 1324
BseMII CTCAG 2 cut(s) 177, 918
BseNI ACTGG 6 cut(s) 220, 269, 331, 653, 959, 1199
BseXI GCAGC 6 cut(s) 707, 791, 796, 818, 935, 1541
BsgI GTGCAG 1 cut(s) 1134
BshFI GGCC 2 cut(s) 6, 255
BshTI ACCGGT 1 cut(s) 390
BsiSI CCGG 2 cut(s) 391, 1025
BslFI GGGAC 2 cut(s) 561, 647
BslI CCNNNNNNNGG 3 cut(s) 226, 405, 586
BsmFI GGGAC 2 cut(s) 561, 647
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 2 cut(s) 6, 255
Bsp119I TTCGAA 1 cut(s) 1034
Bsp143I GATC 5 cut(s) 12, 358, 894, 964, 1227
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 2 cut(s) 710, 714
BspANI GGCC 2 cut(s) 6, 255
BspCNI CTCAG 2 cut(s) 176, 919
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 14, 635
BspMAI CTGCAG 2 cut(s) 588, 994
BspPI GGATC 4 cut(s) 7, 20, 366, 959
BspQI GCTCTTC 1 cut(s) 492
BspT104I TTCGAA 1 cut(s) 1034
BsrBI CCGCTC 1 cut(s) 716
BsrDI GCAATG 2 cut(s) 1139, 1324
BsrFI RCCGGY 2 cut(s) 390, 1024
BsrI ACTGG 6 cut(s) 220, 269, 331, 653, 959, 1199
BssAI RCCGGY 2 cut(s) 390, 1024
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 5 cut(s) 12, 358, 894, 964, 1227
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 3 cut(s) 1468, 1487, 1564
Bst6I CTCTTC 2 cut(s) 217, 492
BstBAI YACGTR 1 cut(s) 1240
BstBI TTCGAA 1 cut(s) 1034
BstC8I GCNNGC 4 cut(s) 454, 714, 718, 1026
BstDEI CTNAG 6 cut(s) 163, 257, 572, 907, 927, 961
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 5 cut(s) 170, 206, 274, 307, 505
BstKTI GATC 5 cut(s) 15, 361, 897, 967, 1230
BstMBI GATC 5 cut(s) 12, 358, 894, 964, 1227
BstMWI GCNNNNNNNGC 1 cut(s) 932
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 2 cut(s) 618, 1376
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 3 cut(s) 584, 691, 990
BstSNI TACGTA 1 cut(s) 1240
BstV1I GCAGC 6 cut(s) 707, 791, 796, 818, 935, 1541
BstV2I GAAGAC 3 cut(s) 558, 918, 1159
BstX2I RGATCY 3 cut(s) 12, 358, 964
BstYI RGATCY 3 cut(s) 12, 358, 964
BsuRI GGCC 2 cut(s) 6, 255
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 5 cut(s) 170, 206, 274, 307, 505
Cac8I GCNNGC 4 cut(s) 454, 714, 718, 1026
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 1 cut(s) 363
Cfr10I RCCGGY 2 cut(s) 390, 1024
Cfr13I GGNCC 2 cut(s) 4, 634
CseI GACGC 1 cut(s) 491
Csp6I GTAC 6 cut(s) 646, 706, 744, 1354, 1417, 1537
CspAI ACCGGT 1 cut(s) 390
CviAII CATG 8 cut(s) 89, 127, 364, 405, 615, 803, 1357, 1373
CviQI GTAC 6 cut(s) 646, 706, 744, 1354, 1417, 1537
DdeI CTNAG 6 cut(s) 163, 257, 572, 907, 927, 961
DpnI GATC 5 cut(s) 14, 360, 896, 966, 1229
DpnII GATC 5 cut(s) 12, 358, 894, 964, 1227
Eam1104I CTCTTC 2 cut(s) 217, 492
EarI CTCTTC 2 cut(s) 217, 492
Eco105I TACGTA 1 cut(s) 1240
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 255
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 1076
EcoRI GAATTC 1 cut(s) 1309
EcoRII CCWGG 1 cut(s) 286
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 8 cut(s) 92, 130, 367, 408, 618, 806, 1360, 1376
FaqI GGGAC 2 cut(s) 561, 647
FatI CATG 8 cut(s) 88, 126, 363, 404, 614, 802, 1356, 1372
FauI CCCGC 2 cut(s) 717, 721
FblI GTMKAC 1 cut(s) 1206
Fnu4HI GCNGC 6 cut(s) 721, 780, 807, 810, 924, 1530
FokI GGATG 5 cut(s) 157, 193, 281, 314, 492
Fsp4HI GCNGC 6 cut(s) 721, 780, 807, 810, 924, 1530
FspBI CTAG 3 cut(s) 726, 747, 1010
GluI GCNGC 6 cut(s) 721, 780, 807, 810, 924, 1530
HaeIII GGCC 2 cut(s) 6, 255
HapII CCGG 2 cut(s) 391, 1025
HgaI GACGC 1 cut(s) 491
Hin1II CATG 8 cut(s) 92, 130, 367, 408, 618, 806, 1360, 1376
HincII GTYRAC 2 cut(s) 522, 1192
HindII GTYRAC 2 cut(s) 522, 1192
HpaII CCGG 2 cut(s) 391, 1025
HphI GGTGA 3 cut(s) 664, 1304, 1475
Hpy166II GTNNAC 4 cut(s) 522, 1192, 1207, 1452
Hpy188I TCNGA 8 cut(s) 12, 57, 240, 301, 760, 840, 1042, 1308
Hpy188III TCNNGA 6 cut(s) 364, 514, 699, 726, 1342, 1507
Hpy8I GTNNAC 4 cut(s) 522, 1192, 1207, 1452
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 3 cut(s) 17, 520, 1379
HpyCH4III ACNGT 3 cut(s) 1468, 1487, 1564
HpyCH4IV ACGT 2 cut(s) 518, 1239
HpyF10VI GCNNNNNNNGC 1 cut(s) 932
HpyF3I CTNAG 6 cut(s) 163, 257, 572, 907, 927, 961
HpySE526I ACGT 2 cut(s) 518, 1239
Hsp92II CATG 8 cut(s) 92, 130, 367, 408, 618, 806, 1360, 1376
KroI GCCGGC 1 cut(s) 1024
KroNI GCCGGC 1 cut(s) 1026
Kzo9I GATC 5 cut(s) 12, 358, 894, 964, 1227
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 5 cut(s) 70, 230, 563, 1013, 1400
Lsp1109I GCAGC 6 cut(s) 707, 791, 796, 818, 935, 1541
LweI GCATC 4 cut(s) 215, 465, 1041, 1092
MaeI CTAG 3 cut(s) 726, 747, 1010
MaeII ACGT 2 cut(s) 518, 1239
MaeIII GTNAC 4 cut(s) 185, 514, 652, 1231
MalI GATC 5 cut(s) 14, 360, 896, 966, 1229
MbiI CCGCTC 1 cut(s) 716
MboI GATC 5 cut(s) 12, 358, 894, 964, 1227
MflI RGATCY 3 cut(s) 12, 358, 964
MluCI AATT 8 cut(s) 367, 623, 739, 864, 1309, 1325, 1389, 1544
MlyI GAGTC 4 cut(s) 387, 517, 1173, 1507
MmeI TCCRAC 1 cut(s) 48
MroNI GCCGGC 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 956
MspA1I CMGCKG 2 cut(s) 809, 926
MspI CCGG 2 cut(s) 391, 1025
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 932
NaeI GCCGGC 1 cut(s) 1026
NcoI CCATGG 1 cut(s) 126
NdeII GATC 5 cut(s) 12, 358, 894, 964, 1227
NgoMIV GCCGGC 1 cut(s) 1024
NlaIII CATG 8 cut(s) 92, 130, 367, 408, 618, 806, 1360, 1376
NlaIV GGNNCC 2 cut(s) 14, 635
NmuCI GTSAC 2 cut(s) 514, 652
NspI RCATGY 2 cut(s) 618, 1376
NspV TTCGAA 1 cut(s) 1034
PagI TCATGA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 255
PciI ACATGT 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 1236
PctI GAATGC 1 cut(s) 880
PdiI GCCGGC 1 cut(s) 1026
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 6 cut(s) 121, 445, 501, 755, 1006, 1303
PflFI GACNNNGTC 1 cut(s) 1163
PflMI CCANNNNNTGG 1 cut(s) 405
PinAI ACCGGT 1 cut(s) 390
PkrI GCNGC 6 cut(s) 722, 781, 808, 811, 925, 1531
PleI GAGTC 4 cut(s) 386, 517, 1172, 1507
PpsI GAGTC 4 cut(s) 386, 517, 1172, 1507
Ppu21I YACGTR 1 cut(s) 1240
PscI ACATGT 1 cut(s) 614
PsiI TTATAA 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 14, 635
PspPI GGNCC 2 cut(s) 4, 634
PstI CTGCAG 2 cut(s) 588, 994
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 3 cut(s) 12, 358, 964
PsyI GACNNNGTC 1 cut(s) 1163
PvuII CAGCTG 2 cut(s) 809, 926
RsaI GTAC 6 cut(s) 647, 707, 745, 1355, 1418, 1538
RsaNI GTAC 6 cut(s) 646, 706, 744, 1354, 1417, 1537
SapI GCTCTTC 1 cut(s) 492
SatI GCNGC 6 cut(s) 721, 780, 807, 810, 924, 1530
Sau3AI GATC 5 cut(s) 12, 358, 894, 964, 1227
Sau96I GGNCC 2 cut(s) 4, 634
ScaI AGTACT 1 cut(s) 647
SchI GAGTC 4 cut(s) 387, 517, 1173, 1507
ScrFI CCNGG 1 cut(s) 288
SfaNI GCATC 4 cut(s) 215, 465, 1041, 1092
SfcI CTRYAG 3 cut(s) 584, 691, 990
SfuI TTCGAA 1 cut(s) 1034
SinI GGWCC 1 cut(s) 634
SmlI CTYRAG 2 cut(s) 1212, 1505
SmoI CTYRAG 2 cut(s) 1212, 1505
SnaBI TACGTA 1 cut(s) 1240
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 8 cut(s) 367, 623, 739, 864, 1309, 1325, 1389, 1544
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 2 cut(s) 710, 714
SspMI CTAG 3 cut(s) 726, 747, 1010
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 1468, 1487, 1564
TaiI ACGT 2 cut(s) 521, 1242
TaqI TCGA 4 cut(s) 448, 480, 1034, 1446
TaqII GACCGA 1 cut(s) 651
TasI AATT 8 cut(s) 367, 623, 739, 864, 1309, 1325, 1389, 1544
TatI WGTACW 3 cut(s) 645, 743, 1353
TfiI GAWTC 6 cut(s) 121, 445, 501, 755, 1006, 1303
TseFI GTSAC 2 cut(s) 514, 652
TseI GCWGC 6 cut(s) 720, 779, 806, 809, 923, 1529
Tsp45I GTSAC 2 cut(s) 514, 652
TspGWI ACGGA 2 cut(s) 1142, 1176
Tth111I GACNNNGTC 1 cut(s) 1163
Van91I CCANNNNNTGG 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 634
XapI RAATTY 2 cut(s) 623, 1309
XbaI TCTAGA 1 cut(s) 725
XceI RCATGY 2 cut(s) 618, 1376
XmiI GTMKAC 1 cut(s) 1206
XmnI GAANNNNTTC 1 cut(s) 956
XspI CTAG 3 cut(s) 726, 747, 1010
ZrmI AGTACT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.