Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2288027 .. 2305970

Gene Structure 17944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG033900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3183 bp

ATGATCTCTTCGGTTAGGCTCAGAACCCCAACTTTCACGTCGGCACAGTTCTCGAACCAGAAGTGTTGTTTGGGAAAGATAGAGTATTGTTCCCTCCCTAATATTCAGAATGCGAAACAGAGCATCCTCTGTTCCTCCAAGCCGCTTCACATTTCTTCAGCTGAGAGTTTTGCGTTGGTGGCCAAGACTCAGAAGCGCGGTTCGACAAGGTGTGATGTCTATGAGGCAGACAGATCACGCCCGATTGAGATCAACATCGACCTACCGGACCAGCAGGCTCGGAAGGAGACAGCTCAGACTCTCAAGATTAGTCTCTACTTTGCGACCTGGTGGGCTTTGAATGTTGTGTTCAATATATACAATAAGAAGGTTTTGAATGTGTTCCCATTTCCATGGCTCACATCCACGTTGTCACTCGCAACTGGGTCTCTGATGATGCTCATTTCATGGGCCGTTAGGATTGCTGAAACCCCCAAAACAGATATGGACTTCTGGAAGACATTGTTTCCGGTTGCAGTGGCGCATTCAATTGGGCATGTAGCAGCGACCGTGAGTATGTCAAAGGTTGCAGTTTCATTCACGCATATCATCAAGAGTGGTGAACCTGCTTTTAGTGTCTTGGTTTCGAGGTTCTTATTAGGCGAAACGTTTCCCAGTTCGGTTTACCTCTCACTGTTGCCAATTATCGGAGGGTGTGCGCTTGCTGCTGTAACCGAGATAAATTTCAACATGATTGGGTTTATGGGTGCTATGATATCGAATCTGGCATTCGTGTTCCGAAACATATTTTCGAAGAAAGGGATGAAGGGGAAGTCTGTCAGTGGCATGAACTACTATGCTTGTCTGTCTATGTTGTCTCTATTGATCCTGATTCCATTTGCCATTGCCGTCGAGGGTCCCCAGTTATGGGCAGCTGGATGGAAGACAGCTCTTGCACAGATTGGTCCCAATTTCATATGGTGGTTGGCAGCTCAGAGTATCTTCTATCACTTGTATAATCAGGTTTCATACATGTCACTCGATCAGATTTCTCCCTTAACATTCAGCATCGGGAACACAATGAAGCGTATATCCGTCATAGTTTCCTCCATTATCATTTTCCGCACCCCTGTTCAACCGGTCAATTGCCTTGGAGCAGGCATTGCAATCCTTGGCACCTTCCTCTACTCACAGGGCAACAAGGGCAGCAAGGGCAGCAAGAAGCCTCACTGCACAATAGTTGCATCAAAAGCGTCATGTAATCACATATCCTTGAAAGGAAACTCGCCGAGCAACTTTCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAAGGAGCTTTTCTGAATGATGGTAAAGGGCTCAACAACTGGGATGTCTTCACTCACAAGCCTGGTACTATCCTGGATGGAACTAATGGAGACACTGCTGTTGATCAGTACCATCTTTATAAGGAAGACTTGGGTCTCATGAACAACATTGGAGTCAACAGCTACCGTCTTTCTATATCATGGGCAAGAATTTTACCCAAAGGAAGATTTGGAAAAGTGAACAGAGCTGGCATTGATCACTATAACAAGTTCATCGACGCTCTTCTGCTTAGAGGAATCCAGCCCTTTGTGACATTGACCCACTACGACATACCTCAGGAACTTGAAGATAGATATGGAGCTTGGCTAAGTCCCCTACTGCAGGAAGATTTTAGATATTATGCAAATATATGTTTCAAATTCTTTGGAGACAGAGTCAAGTACTGGTCCACTTTCAATGAGCCCAATGTTGTGGTCATTCGTGGATATAGGTCAGGGATTTACCCACCATCTCATTGCTCTCTTCCTTTCGGAAATTGTACTTCTGGAGACTCAGAAAGAGAGCCTTTCATTGCAGCTCATAACATCATTCTATCCCATGCAGCTGCTGTGAATATATACCGAACCAAATATCAGAAAAAACAAGGAGGTAGCATTGGGATGGTGATGAATGCTATATGGTATGAACCCATCAGCAACTCCTTAGAAGACAGATTAGCAGCTGAGAGGGCTCAGTCTTTCTATATCAACTGGTTCTTAGACCCAATTCTCCATGGAAGATACCCTGCAGAAATGCATGAGCTTCTAGGAGCTGATTTGCCTGTATTTTCCAAATTTGATCTGGAGACGCTGAAGAATGGATTAGACTTCATCGGTATCAATCACTACACCAGTTTTTACTCAAAAGACTGTATGTTTTCTCCATGTGAACCAGGACCAGGAGCTTCAAGGACAGAGGGTTATGCTTTGAGAACTGCACAAAAAGATGGAGTCTACATTGGAGAACCAACTTCAGTTGATTGGATATATGTGTATCCTCAAGGAATGGAGAAGATGGTAACATACATAAAAGAGAGGTACAATAATACACCAATGTTTATTACAGAAAATGGGTATGGTGTGGAGGAGAATCCAAATTCCACAAATGAAGAACTGTTCCACGATGTCAAGAGAGTGGAGTACTTGAGAAGGTACTTACAGGCACTAGCAGATACAATGAGAACTAAAGGAGCAGATGTAAGAGGGTACTTTGTGTGGTCATTGCTTGATGATTTCGAGTGGACAAGTGGATATACGTTTTTCCTCACCCGCAATGTCACTCCTAACCATTTGGTTCACAGTCATGTAGGCCTCACGTACTGCACAATAGTTGCATCAAAAGTGCCATGTAATCACATATCCTTGAAAGGAAACTCGCCGAGTAACTTTCTCTTTGGAACTGCATCCTCTTCTTGTCAGTTTGAAGGAGCTTTTCTGAATGATGGTAAAGGTCTCAACAACTGGGATATCTTCACTCACAAGCCTGAAGTTATATCTTGGCTTGTCATCCTGGATGGAACTAATGGAGACATTGCTGTTGATCAGTACCATCTTTATCAGGAAGACTTGGATCTCATGAATAACAATGGAGTCAACAGCTACCGCTTTTCTATGAATCTCTACTATAACTATGAACCAGAAGGAAGATTTGGAAAAGTGAACAGAGCTGCCATTGATCACTATAACAAGTTCATCGATGCTCTTCTGCTTAGAGGAATCCAGCCCTTTGTGACATTACGTCACTACTACATACCTCAGGATCTTGAAGACAGATATGGATCTTGGCTAAGTCCGCTACTGCAGGAAGATTTTAGATATTATGCAAATATATGTTTCAAATTCTTTGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0006725 GO:0008150 GO:0008152 GO:0008422 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0015926 GO:0016787 GO:0016798 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0047782 GO:0071704 GO:1901135 GO:1901360 GO:1901362 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

1060

Amino Acids

119.45

Weight (kDa)

8.29

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	101 - 390	3.6e-114	Triose-phosphate Transporter family
EamA	PF00892	109 - 235	7.4e-06	EamA-like transporter family
Glyco_hydro_1	PF00232	422 - 862	2.1e-136	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	902 - 1060	1.3e-44	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1431
Acc36I	ACCTGC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	1154
AccI	GTMKAC	1 cut(s)	2283
AccII	CGCG	1 cut(s)	198
AciI	CCGC	6 cut(s)	143, 198, 1102, 2599, 2932, 3122
AclI	AACGTT	1 cut(s)	647
AclWI	GGATC	4 cut(s)	859, 2907, 3096, 3115
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	6 cut(s)	721, 1500, 1709, 2123, 2425, 3167
AcuI	CTGAAG	4 cut(s)	141, 2162, 2286, 2835
AfiI	CCNNNNNNNGG	5 cut(s)	686, 906, 907, 1672, 2228
AflIII	ACRYGT	1 cut(s)	1011
AgeI	ACCGGT	1 cut(s)	1117
AhdI	GACNNNNNGTC	1 cut(s)	3066
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	6 cut(s)	326, 1372, 1383, 2221, 2227, 2838
AjuI	GAANNNNNNNTTGG	4 cut(s)	53, 85, 2961, 2993
AlwI	GGATC	4 cut(s)	859, 2907, 3096, 3115
AlwNI	CAGNNNCTG	1 cut(s)	1898
AoxI	GGCC	3 cut(s)	180, 450, 2638
ApoI	RAATTY	6 cut(s)	721, 1500, 1709, 2123, 2425, 3167
AsiGI	ACCGGT	1 cut(s)	1117
Asp700I	GAANNNNTTC	2 cut(s)	380, 648
AspLEI	GCGC	3 cut(s)	198, 523, 700
AspS9I	GGNCC	6 cut(s)	268, 450, 896, 944, 1737, 2225
AsuHPI	GGTGA	3 cut(s)	611, 1966, 2587
AsuII	TTCGAA	1 cut(s)	791
AvaII	GGWCC	5 cut(s)	268, 896, 944, 1737, 2225
AxyI	CCTNAGG	2 cut(s)	1626, 3084
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	1154
BanII	GRGCYC	3 cut(s)	1344, 1755, 2023
BbsI	GAAGAC	7 cut(s)	503, 929, 1351, 1443, 2004, 2898, 3102
BceAI	ACGGC	2 cut(s)	437, 872
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
BciVI	GTATCC	1 cut(s)	2334
BclI	TGATCA	4 cut(s)	1414, 1546, 2869, 3004
BfaI	CTAG	2 cut(s)	2096, 2495
BfmI	CTRYAG	3 cut(s)	1670, 2076, 3128
BfuAI	ACCTGC	1 cut(s)	613
BfuI	GTATCC	1 cut(s)	2334
BmcAI	AGTACT	2 cut(s)	1733, 2471
Bme1390I	CCNGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
Bme18I	GGWCC	5 cut(s)	268, 896, 944, 1737, 2225
BmeRI	GACNNNNNGTC	1 cut(s)	3066
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	6 cut(s)	268, 450, 896, 944, 1737, 2225
BmiI	GGNNCC	4 cut(s)	897, 898, 946, 1156
BmrFI	CCNGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
BmrI	ACTGGG	5 cut(s)	432, 648, 895, 1360, 2800
BmsI	GCATC	8 cut(s)	132, 426, 1056, 1232, 1301, 2672, 2741, 3016
BmuI	ACTGGG	5 cut(s)	432, 648, 895, 1360, 2800
BoxI	GACNNNNGTC	1 cut(s)	1443
BpiI	GAAGAC	7 cut(s)	503, 929, 1351, 1443, 2004, 2898, 3102
BpmI	CTGGAG	2 cut(s)	1857, 2153
Bpu14I	TTCGAA	1 cut(s)	791
BpuEI	CTTGAG	3 cut(s)	287, 2313, 2494
Bsa29I	ATCGAT	1 cut(s)	3024
BsaAI	YACGTR	1 cut(s)	2646
BsaBI	GATNNNNATC	3 cut(s)	248, 254, 3106
BsaI	GGTCTC	3 cut(s)	432, 1451, 2786
BsaJI	CCNNGG	4 cut(s)	392, 1129, 1150, 2062
BsaWI	WCCGGW	3 cut(s)	265, 508, 1117
BsaXI	ACNNNNNCTCC	4 cut(s)	1710, 1740, 2511, 2541
Bsc4I	CCNNNNNNNGG	5 cut(s)	686, 906, 907, 1672, 2228
Bse118I	RCCGGY	1 cut(s)	1117
Bse1I	ACTGG	8 cut(s)	427, 654, 901, 1355, 1739, 2045, 2181, 2795
Bse21I	CCTNAGG	2 cut(s)	1626, 3084
Bse3DI	GCAATG	7 cut(s)	882, 1140, 1804, 1860, 2549, 2608, 2859
Bse8I	GATNNNNATC	3 cut(s)	248, 254, 3106
BseBI	CCWGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
BseCI	ATCGAT	1 cut(s)	3024
BseDI	CCNNGG	4 cut(s)	392, 1129, 1150, 2062
BseJI	GATNNNNATC	3 cut(s)	248, 254, 3106
BseLI	CCNNNNNNNGG	5 cut(s)	686, 906, 907, 1672, 2228
BseMI	GCAATG	7 cut(s)	882, 1140, 1804, 1860, 2549, 2608, 2859
BseNI	ACTGG	8 cut(s)	427, 654, 901, 1355, 1739, 2045, 2181, 2795
BseRI	GAGGAG	1 cut(s)	2429
BsgI	GTGCAG	3 cut(s)	1195, 2250, 2635
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	182, 452, 2640
BshNI	GGYRCC	1 cut(s)	1154
BshTI	ACCGGT	1 cut(s)	1117
BshVI	ATCGAT	1 cut(s)	3024
BsiEI	CGRYCG	1 cut(s)	549
BsiSI	CCGG	3 cut(s)	266, 509, 1118
BslFI	GGGAC	3 cut(s)	882, 930, 1647
BslI	CCNNNNNNNGG	5 cut(s)	686, 906, 907, 1672, 2228
BsmBI	CGTCTC	1 cut(s)	2129
BsmFI	GGGAC	3 cut(s)	882, 930, 1647
BsmI	GAATGC	4 cut(s)	115, 523, 767, 1966
BsnI	GGCC	3 cut(s)	182, 452, 2640
Bso31I	GGTCTC	3 cut(s)	432, 1451, 2786
Bsp119I	TTCGAA	1 cut(s)	791
Bsp1286I	GDGCHC	3 cut(s)	1344, 1755, 2023
Bsp19I	CCATGG	2 cut(s)	392, 2062
BspACI	CCGC	6 cut(s)	143, 198, 1102, 2599, 2932, 3122
BspANI	GGCC	3 cut(s)	182, 452, 2640
BspDI	ATCGAT	1 cut(s)	3024
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	2 cut(s)	1449, 2904
BspLI	GGNNCC	4 cut(s)	897, 898, 946, 1156
BspMAI	CTGCAG	3 cut(s)	1674, 2080, 3132
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	4 cut(s)	859, 2907, 3096, 3115
BspQI	GCTCTTC	2 cut(s)	1578, 3036
BspT104I	TTCGAA	1 cut(s)	791
BspT107I	GGYRCC	1 cut(s)	1154
BspTNI	GGTCTC	3 cut(s)	432, 1451, 2786
BsrDI	GCAATG	7 cut(s)	882, 1140, 1804, 1860, 2549, 2608, 2859
BsrFI	RCCGGY	1 cut(s)	1117
BsrI	ACTGG	8 cut(s)	427, 654, 901, 1355, 1739, 2045, 2181, 2795
BssAI	RCCGGY	1 cut(s)	1117
BssECI	CCNNGG	4 cut(s)	392, 1129, 1150, 2062
BssT1I	CCWWGG	4 cut(s)	392, 1129, 1150, 2062
Bst2UI	CCWGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
Bst4CI	ACNGT	7 cut(s)	48, 550, 675, 1478, 2201, 2445, 2630
Bst6I	CTCTTC	6 cut(s)	13, 1303, 1578, 1818, 2743, 3036
BstAPI	GCANNNNNTGC	1 cut(s)	1142
BstBAI	YACGTR	1 cut(s)	2646
BstBI	TTCGAA	1 cut(s)	791
BstC8I	GCNNGC	4 cut(s)	276, 702, 1138, 1540
BstDSI	CCRYGG	2 cut(s)	392, 2062
BstENI	CCTNNNNNAGG	1 cut(s)	1670
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	198, 523, 700
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	9 cut(s)	179, 704, 1142, 1182, 1191, 1194, 1229, 2018, 3121
BstNI	CCWGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
BstNSI	RCATGY	2 cut(s)	539, 1015
BstPAI	GACNNNNGTC	1 cut(s)	1443
BstSCI	CCNGG	6 cut(s)	326, 1372, 1383, 2221, 2227, 2838
BstSFI	CTRYAG	3 cut(s)	1670, 2076, 3128
BstUI	CGCG	1 cut(s)	198
BstV2I	GAAGAC	7 cut(s)	503, 929, 1351, 1443, 2004, 2898, 3102
BstX2I	RGATCY	3 cut(s)	2899, 3088, 3107
BstXI	CCANNNNNNTGG	2 cut(s)	393, 1762
BstYI	RGATCY	3 cut(s)	2899, 3088, 3107
Bsu15I	ATCGAT	1 cut(s)	3024
Bsu36I	CCTNAGG	2 cut(s)	1626, 3084
BsuI	GTATCC	1 cut(s)	2334
BsuRI	GGCC	3 cut(s)	182, 452, 2640
BsuTUI	ATCGAT	1 cut(s)	3024
BtgI	CCRYGG	2 cut(s)	392, 2062
BtrI	CACGTC	1 cut(s)	39
BtsI	GCAGTG	3 cut(s)	522, 1207, 1404
BtsIMutI	CAGTG	5 cut(s)	522, 671, 826, 1207, 1404
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	4 cut(s)	276, 702, 1138, 1540
CaiI	CAGNNNCTG	1 cut(s)	1898
CciI	TCATGA	2 cut(s)	1449, 2904
CfoI	GCGC	3 cut(s)	198, 523, 700
Cfr10I	RCCGGY	1 cut(s)	1117
Cfr13I	GGNCC	6 cut(s)	268, 450, 896, 944, 1737, 2225
ClaI	ATCGAT	1 cut(s)	3024
CseI	GACGC	3 cut(s)	1221, 1577, 2146
CsiI	ACCWGGT	1 cut(s)	326
CspAI	ACCGGT	1 cut(s)	1117
DriI	GACNNNNNGTC	1 cut(s)	3066
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	6 cut(s)	13, 1303, 1578, 1818, 2743, 3036
Eam1105I	GACNNNNNGTC	1 cut(s)	3066
EarI	CTCTTC	6 cut(s)	13, 1303, 1578, 1818, 2743, 3036
Eco130I	CCWWGG	4 cut(s)	392, 1129, 1150, 2062
Eco147I	AGGCCT	1 cut(s)	2640
Eco24I	GRGCYC	3 cut(s)	1344, 1755, 2023
Eco31I	GGTCTC	3 cut(s)	432, 1451, 2786
Eco32I	GATATC	2 cut(s)	756, 2797
Eco47I	GGWCC	5 cut(s)	268, 896, 944, 1737, 2225
Eco57I	CTGAAG	4 cut(s)	141, 2162, 2286, 2835
Eco81I	CCTNAGG	2 cut(s)	1626, 3084
EcoNI	CCTNNNNNAGG	1 cut(s)	1670
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRII	CCWGG	6 cut(s)	326, 1372, 1383, 2221, 2227, 2838
EcoRV	GATATC	2 cut(s)	756, 2797
EcoT14I	CCWWGG	4 cut(s)	392, 1129, 1150, 2062
EcoT22I	ATGCAT	1 cut(s)	2088
EcoT38I	GRGCYC	3 cut(s)	1344, 1755, 2023
ErhI	CCWWGG	4 cut(s)	392, 1129, 1150, 2062
Esp3I	CGTCTC	1 cut(s)	2129
FalI	AAGNNNNNCTT	4 cut(s)	1424, 1456, 1840, 1872
FaqI	GGGAC	3 cut(s)	882, 930, 1647
FauI	CCCGC	1 cut(s)	2606
FauNDI	CATATG	1 cut(s)	956
FbaI	TGATCA	4 cut(s)	1414, 1546, 2869, 3004
FblI	GTMKAC	1 cut(s)	2283
FriOI	GRGCYC	3 cut(s)	1344, 1755, 2023
FspBI	CTAG	2 cut(s)	2096, 2495
GlaI	GCGC	3 cut(s)	197, 522, 699
GsuI	CTGGAG	2 cut(s)	1857, 2153
HaeIII	GGCC	3 cut(s)	182, 452, 2640
HapII	CCGG	3 cut(s)	266, 509, 1118
HgaI	GACGC	3 cut(s)	1221, 1577, 2146
HhaI	GCGC	3 cut(s)	198, 523, 700
Hin6I	GCGC	3 cut(s)	196, 521, 698
HinP1I	GCGC	3 cut(s)	196, 521, 698
HincII	GTYRAC	2 cut(s)	1468, 2923
HindII	GTYRAC	2 cut(s)	1468, 2923
HpaII	CCGG	3 cut(s)	266, 509, 1118
HphI	GGTGA	3 cut(s)	611, 1966, 2587
Hpy99I	CGWCG	3 cut(s)	43, 893, 1571
HpyAV	CCTTC	8 cut(s)	277, 361, 799, 1168, 1307, 2472, 2747, 2963
HpyCH4III	ACNGT	7 cut(s)	48, 550, 675, 1478, 2201, 2445, 2630
HpyCH4IV	ACGT	6 cut(s)	38, 407, 647, 2585, 2645, 3067
HpyF10VI	GCNNNNNNNGC	9 cut(s)	179, 704, 1142, 1182, 1191, 1194, 1229, 2018, 3121
HpySE526I	ACGT	6 cut(s)	38, 407, 647, 2585, 2645, 3067
HspAI	GCGC	3 cut(s)	196, 521, 698
KflI	GGGWCCC	1 cut(s)	896
Ksp22I	TGATCA	4 cut(s)	1414, 1546, 2869, 3004
LguI	GCTCTTC	2 cut(s)	1578, 3036
LmnI	GCTCC	7 cut(s)	1133, 1316, 1649, 2099, 2231, 2519, 2756
LweI	GCATC	8 cut(s)	132, 426, 1056, 1232, 1301, 2672, 2741, 3016
MabI	ACCWGGT	1 cut(s)	326
MaeI	CTAG	2 cut(s)	2096, 2495
MaeII	ACGT	6 cut(s)	38, 407, 647, 2585, 2645, 3067
MaeIII	GTNAC	9 cut(s)	411, 709, 1014, 1600, 2347, 2605, 2711, 3058, 3068
MfeI	CAATTG	2 cut(s)	528, 1123
MflI	RGATCY	3 cut(s)	2899, 3088, 3107
MhlI	GDGCHC	3 cut(s)	1344, 1755, 2023
MlsI	TGGCCA	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	7 cut(s)	181, 292, 1473, 1734, 1835, 2289, 2928
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	2088
MroXI	GAANNNNTTC	2 cut(s)	380, 648
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	1037
MslI	CAYNNNNRTG	3 cut(s)	391, 1949, 2631
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	4 cut(s)	161, 914, 1895, 2012
MspI	CCGG	3 cut(s)	266, 509, 1118
MspR9I	CCNGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
MunI	CAATTG	2 cut(s)	528, 1123
Mva1269I	GAATGC	4 cut(s)	115, 523, 767, 1966
MvaI	CCWGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	9 cut(s)	179, 704, 1142, 1182, 1191, 1194, 1229, 2018, 3121
NcoI	CCATGG	2 cut(s)	392, 2062
NdeI	CATATG	1 cut(s)	956
NlaIV	GGNNCC	4 cut(s)	897, 898, 946, 1156
NmeAIII	GCCGAG	2 cut(s)	1293, 2733
NmuCI	GTSAC	6 cut(s)	411, 1014, 1600, 2605, 3058, 3068
NsiI	ATGCAT	1 cut(s)	2088
NspI	RCATGY	2 cut(s)	539, 1015
NspV	TTCGAA	1 cut(s)	791
PagI	TCATGA	2 cut(s)	1449, 2904
PceI	AGGCCT	1 cut(s)	2640
PciI	ACATGT	1 cut(s)	1011
PciSI	GCTCTTC	2 cut(s)	1578, 3036
PctI	GAATGC	4 cut(s)	115, 523, 767, 1966
PdmI	GAANNNNTTC	2 cut(s)	380, 648
PfeI	GAWTC	6 cut(s)	760, 871, 1587, 2419, 2944, 3045
PflFI	GACNNNGTC	1 cut(s)	1724
PfoI	TCCNGGA	2 cut(s)	1383, 2838
PinAI	ACCGGT	1 cut(s)	1117
PleI	GAGTC	7 cut(s)	181, 292, 1472, 1733, 1835, 2288, 2927
PpsI	GAGTC	7 cut(s)	181, 292, 1472, 1733, 1835, 2288, 2927
Ppu21I	YACGTR	1 cut(s)	2646
PpuMI	RGGWCCY	1 cut(s)	896
PscI	ACATGT	1 cut(s)	1011
PshAI	GACNNNNGTC	1 cut(s)	1443
PsiI	TTATAA	1 cut(s)	1431
Psp1406I	AACGTT	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	896
Psp6I	CCWGG	6 cut(s)	326, 1372, 1383, 2221, 2227, 2838
PspGI	CCWGG	6 cut(s)	326, 1372, 1383, 2221, 2227, 2838
PspN4I	GGNNCC	4 cut(s)	897, 898, 946, 1156
PspPI	GGNCC	6 cut(s)	268, 450, 896, 944, 1737, 2225
PspPPI	RGGWCCY	1 cut(s)	896
PstI	CTGCAG	3 cut(s)	1674, 2080, 3132
PstNI	CAGNNNCTG	1 cut(s)	1898
PsuI	RGATCY	3 cut(s)	2899, 3088, 3107
PsyI	GACNNNGTC	1 cut(s)	1724
PvuII	CAGCTG	4 cut(s)	161, 914, 1895, 2012
RseI	CAYNNNNRTG	3 cut(s)	391, 1949, 2631
SapI	GCTCTTC	2 cut(s)	1578, 3036
SaqAI	TTAA	1 cut(s)	1037
Sau96I	GGNCC	6 cut(s)	268, 450, 896, 944, 1737, 2225
ScaI	AGTACT	2 cut(s)	1733, 2471
SchI	GAGTC	7 cut(s)	181, 292, 1473, 1734, 1835, 2289, 2928
ScrFI	CCNGG	6 cut(s)	328, 1374, 1385, 2223, 2229, 2840
SduI	GDGCHC	3 cut(s)	1344, 1755, 2023
SexAI	ACCWGGT	1 cut(s)	326
SfaNI	GCATC	8 cut(s)	132, 426, 1056, 1232, 1301, 2672, 2741, 3016
SfcI	CTRYAG	3 cut(s)	1670, 2076, 3128
SfuI	TTCGAA	1 cut(s)	791
SinI	GGWCC	5 cut(s)	268, 896, 944, 1737, 2225
SmiMI	CAYNNNNRTG	3 cut(s)	391, 1949, 2631
SmlI	CTYRAG	3 cut(s)	302, 2328, 2473
SmoI	CTYRAG	3 cut(s)	302, 2328, 2473
SseBI	AGGCCT	1 cut(s)	2640
SsiI	CCGC	6 cut(s)	143, 198, 1102, 2599, 2932, 3122
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	2 cut(s)	2096, 2495
StuI	AGGCCT	1 cut(s)	2640
StyD4I	CCNGG	6 cut(s)	326, 1372, 1383, 2221, 2227, 2838
StyI	CCWWGG	4 cut(s)	392, 1129, 1150, 2062
TaaI	ACNGT	7 cut(s)	48, 550, 675, 1478, 2201, 2445, 2630
TaiI	ACGT	6 cut(s)	41, 410, 650, 2588, 2648, 3070
TatI	WGTACW	3 cut(s)	1731, 1829, 2469
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	6 cut(s)	760, 871, 1587, 2419, 2944, 3045
Tru1I	TTAA	1 cut(s)	1037
Tru9I	TTAA	1 cut(s)	1037
TscAI	CASTG	5 cut(s)	522, 678, 826, 1214, 1411
TseFI	GTSAC	6 cut(s)	411, 1014, 1600, 2605, 3058, 3068
Tsp45I	GTSAC	6 cut(s)	411, 1014, 1600, 2605, 3058, 3068
TspGWI	ACGGA	1 cut(s)	1063
TspRI	CASTG	5 cut(s)	522, 678, 826, 1214, 1411
Tth111I	GACNNNGTC	1 cut(s)	1724
VpaK11BI	GGWCC	5 cut(s)	268, 896, 944, 1737, 2225
XagI	CCTNNNNNAGG	1 cut(s)	1670
XapI	RAATTY	6 cut(s)	721, 1500, 1709, 2123, 2425, 3167
XceI	RCATGY	2 cut(s)	539, 1015
XcmI	CCANNNNNNNNNTGG	2 cut(s)	481, 2128
XmiI	GTMKAC	1 cut(s)	2283
XmnI	GAANNNNTTC	2 cut(s)	380, 648
XspI	CTAG	2 cut(s)	2096, 2495
ZrmI	AGTACT	2 cut(s)	1733, 2471
Zsp2I	ATGCAT	1 cut(s)	2088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.