Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2321036 .. 2322787

Gene Structure 1752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGTGTCATGTGATCACATATATATCCTTGAAAGGAAACTCGCCGAGCAACTTTCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAAGGAGCTTTTCTGAACGATGGTAAAGGTCTCAACAACTGGGATGTCTTCACTCACAAGCCTGAAGTTATATCTTGGCTTGTCATCCTGGATGGAACTAATGGAGACATTGCTGTTGATCAGTACCATCTTTATCAGGAAGATTTGGATCTCATGAATATCATTGGAGTCAACAGCTACCGCTTTTCTATATCATGGGCAAGAATTTTACCCAGAAGATTTGGAAAAGTGAACAGAGCTGGCATTGATCACTATAACAAGTTCATCGATGCTCTTCAGTACTGGTCCACTTTCAATGAGCCCAATGTTGTGGCCATTCGTGGATATATGTCAGGGATAGACCCACCATCTCATTGCTCTCTCCCTTTTAGAAATTGTACTGTTGGAGATTTAGAAAGAGAGCATTTTATTGCAGCTCATAACATCATTCTATCCCATGCAGCTGCTGTGATTACCGAACAAGATATCAGGTTTGTATTAAATGTCTCGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

194

Amino Acids

21.93

Weight (kDa)

5.68

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	15 - 123	1.4e-37	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	118 - 185	9.4e-08	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	2 cut(s)	174, 350
AfaI	GTAC	3 cut(s)	215, 371, 469
AgsI	TTSAA	3 cut(s)	34, 92, 385
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	98, 267, 329, 506, 533
AluI	AGCT	5 cut(s)	98, 267, 329, 506, 533
Alw26I	GTCTC	3 cut(s)	125, 189, 580
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	3 cut(s)	503, 530, 533
ApoI	RAATTY	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	515, 520, 542
BccI	CCATC	4 cut(s)	104, 176, 225, 445
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	3 cut(s)	15, 208, 337
BcoDI	GTCTC	3 cut(s)	125, 189, 580
BisI	GCNGC	3 cut(s)	504, 531, 534
BlsI	GCNGC	3 cut(s)	505, 532, 535
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	179
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	80, 349
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	134, 377
Bse3DI	GCAATG	2 cut(s)	198, 442
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	357
BseGI	GGATG	4 cut(s)	71, 139, 174, 187
BseJI	GATNNNNATC	1 cut(s)	237
BseMI	GCAATG	2 cut(s)	198, 442
BseNI	ACTGG	2 cut(s)	134, 377
BseXI	GCAGC	3 cut(s)	515, 520, 542
BshFI	GGCC	1 cut(s)	404
BshVI	ATCGAT	1 cut(s)	357
BsmAI	GTCTC	3 cut(s)	125, 189, 580
BsnI	GGCC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	4 cut(s)	15, 208, 238, 337
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	404
BspDI	ATCGAT	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	243
BspPI	GGATC	1 cut(s)	246
BspQI	GCTCTTC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	198, 442
BsrI	ACTGG	2 cut(s)	134, 377
BssMI	GATC	4 cut(s)	15, 208, 238, 337
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	2 cut(s)	82, 369
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	582
BstF5I	GGATG	4 cut(s)	71, 139, 174, 187
BstKTI	GATC	4 cut(s)	18, 211, 241, 340
BstMAI	GTCTC	3 cut(s)	125, 189, 580
BstMBI	GATC	4 cut(s)	15, 208, 238, 337
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	515, 520, 542
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	404
BsuTUI	ATCGAT	1 cut(s)	357
BtsCI	GGATG	4 cut(s)	71, 139, 174, 187
Cac8I	GCNNGC	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	536
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	375
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	214, 370, 468
CviAII	CATG	4 cut(s)	11, 244, 285, 527
CviJI	RGCY	9 cut(s)	98, 151, 169, 267, 329, 391, 404, 506, 533
CviKI_1	RGCY	9 cut(s)	98, 151, 169, 267, 329, 391, 404, 506, 533
CviQI	GTAC	3 cut(s)	214, 370, 468
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	4 cut(s)	17, 210, 240, 339
DpnII	GATC	4 cut(s)	15, 208, 238, 337
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	82, 369
EarI	CTCTTC	2 cut(s)	82, 369
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	375
Eco57I	CTGAAG	2 cut(s)	174, 350
EcoRII	CCWGG	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	4 cut(s)	14, 247, 288, 530
FatI	CATG	4 cut(s)	10, 243, 284, 526
FbaI	TGATCA	3 cut(s)	15, 208, 337
Fnu4HI	GCNGC	3 cut(s)	504, 531, 534
FokI	GGATG	4 cut(s)	58, 146, 161, 194
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	504, 531, 534
GluI	GCNGC	3 cut(s)	504, 531, 534
HaeIII	GGCC	1 cut(s)	404
Hin1II	CATG	4 cut(s)	14, 247, 288, 530
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	262, 322, 378
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	227, 244
Hpy8I	GTNNAC	3 cut(s)	262, 322, 378
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	71, 503, 530
HpyF3I	CTNAG	1 cut(s)	582
Hsp92II	CATG	4 cut(s)	14, 247, 288, 530
Ksp22I	TGATCA	3 cut(s)	15, 208, 337
Kzo9I	GATC	4 cut(s)	15, 208, 238, 337
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	3 cut(s)	515, 520, 542
LweI	GCATC	2 cut(s)	80, 349
MalI	GATC	4 cut(s)	17, 210, 240, 339
MboI	GATC	4 cut(s)	15, 208, 238, 337
MboII	GAAGA	5 cut(s)	69, 130, 242, 318, 356
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	2 cut(s)	294, 463
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
NdeII	GATC	4 cut(s)	15, 208, 238, 337
NlaIII	CATG	4 cut(s)	14, 247, 288, 530
NmeAIII	GCCGAG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	505, 532, 535
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	215, 371, 469
RsaNI	GTAC	3 cut(s)	214, 370, 468
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	569
SatI	GCNGC	3 cut(s)	504, 531, 534
Sau3AI	GATC	4 cut(s)	15, 208, 238, 337
Sau96I	GGNCC	1 cut(s)	375
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	7 cut(s)	100, 121, 269, 331, 508, 535, 563
SfaNI	GCATC	2 cut(s)	80, 349
SinI	GGWCC	1 cut(s)	375
Sse9I	AATT	2 cut(s)	294, 463
SsiI	CCGC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	294, 463
TatI	WGTACW	2 cut(s)	369, 467
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TseI	GCWGC	3 cut(s)	503, 530, 533
TspDTI	ATGAA	2 cut(s)	260, 343
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.