RLG00000031175

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
2700123 .. 2703580
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031175

Sequence Viewer

Length: 1635 bp
ATGTCACTCCTAGCCATTTGGTTCTGCTCTCACTGCCCTAAGAGAGGCCTCTTTCTGTTTGTGAATCTTGATTATTCTGCTCTCACTGTTATGGAGGCTGTATCAGCATTTCATGCTTTCCTCATTGTTGAAATCATGTGTTTTCCGATTCTCATAGTGTCATGTAATCACATATCCTTGAAAGGAAACTCGCCGAGCAACTTTCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAAGGAGCTTTTCTGAATGATGGTAAAGGGCTCAACAACTGGGATGTCTTCACTCACAAGCCTGGTACTATCCTGGATGGAACTAATGGAGACATTGCTGTTGATCAGTACCATCTTTATCAGGAAGACTTGGGTCTCATGAATAACATTGGAGTCAACAGCTACCGTCTTTCCATATCATGGGCAAGAATTTTACCCAAAGGAAGATTTGGAAAAGTGAACAGAGCTGGCATTGATCACTATAACAAGTTCATCGATGCTCTTCAGCTTAGAGGAATCCAGCCCTTTGTGACATTGACCCACTATGACATACCTCAGGAACTTGAAGACAGATATGGATCTTGGCTAAGTCCCCTACTGCAGGAAGATTTTAGATATTATGCAAATATATGTTTCAAATTCTTTGGAGATAGAGTCAAGTACTGGTCCACTTTCAATGAGCCCAATGTTGTGGTCATTCGTGGATATAGGTCAGGGATTTACCCACCATCTCATTGCTCTCTCCCTTTCGGAAATTGTACTACTGGAGACTCAGAAAGAGAGCCTTTCATTGCAGCTCATAACATCATTCTATCCCATGCAGCTGCTGTGAATATATACCGAACCAAATATCAGAAAAAACAAGGAGGTAGCATTGGGATGGTCATGAATGCTATATGGTATGAACCCATCAGCAACTCATTAGAAGACAGATTAGCAGCTGAGAGGGCTCAGTCTTTCTATATCAACTGGTTCTTAGACCCAATTCTCCATGGAAGATACCCTGCAGAAATGCATGAGCTTCTAGGAGCTGATTTGCCTGTATTTTCCAAATTTGATCTGGAGATGCTGAAGAATGGATTAGACTTCATCGGTATCAATCACTACACCAGTTTTTACTCAAAAGACTGTATGTTTTCTCCATGTGAACCAGGACCAGGAGCTTCAAGGACAGAGGGTTATGCTTTGAGAACTGCACAAAAAGATGGAGTCTACATTGGAGAACCAACTTCAGTTGATTGGATATATGTGTATCCTCAAGGAATGGAGAAGATGGTAACATACATAAAAGAGAGGTACAATAATACACCAATGTTTATTACAGAAAATGGGTATGGTGTGGAGGAGAATCCAAATTCCACAAATGAAGAACTGTTCCATGATGTCAAGAGAGTGGAGTACTTGAGAAGTTACTTACGGGCACTAGCAGATACAATGAGAACTAAAGGAGCAGATGTAAGAGGGTACTTCGTGTGGTCATTGCTCGACGATTTCGAGTGGATAAGTGGATATACGGTCAAGTTTGGACTTCACCATGTTGATTATGGCACTCTCAAGAGAACTCCAAGACTCTCTGCAGCTTGGTACAGACAATTTATTGCTAATAACACCCTGCAGATTTTAAGTGCCCAGGAATGA

Protein Analysis

545

Amino Acids

62.2

Weight (kDa)

6.07

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 64 - 535 3.3e-151 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 417
AccI GTMKAC 1 cut(s) 1209
AclWI GGATC 1 cut(s) 583
AcsI RAATTY 4 cut(s) 426, 635, 1049, 1351
AcuI CTGAAG 3 cut(s) 485, 1088, 1212
AfaI GTAC 8 cut(s) 304, 347, 659, 757, 1295, 1397, 1463, 1583
AfiI CCNNNNNNNGG 4 cut(s) 44, 417, 598, 1154
AgsI TTSAA 7 cut(s) 131, 181, 239, 563, 634, 673, 1164
AjnI CCWGG 5 cut(s) 298, 309, 1147, 1153, 1626
Alw26I GTCTC 3 cut(s) 321, 377, 759
AlwI GGATC 1 cut(s) 583
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 5 cut(s) 791, 818, 821, 935, 1574
ApoI RAATTY 4 cut(s) 426, 635, 1049, 1351
AspS9I GGNCC 2 cut(s) 663, 1151
AsuHPI GGTGA 1 cut(s) 1520
AvaII GGWCC 2 cut(s) 663, 1151
AxyI CCTNAGG 1 cut(s) 552
BaeGI GKGCMC 2 cut(s) 1420, 1627
BanII GRGCYC 3 cut(s) 270, 681, 949
BbsI GAAGAC 4 cut(s) 277, 369, 570, 930
BbvI GCAGC 5 cut(s) 803, 808, 830, 947, 1586
BccI CCATC 8 cut(s) 251, 308, 357, 733, 871, 914, 1196, 1264
BciT130I CCWGG 5 cut(s) 300, 311, 1149, 1155, 1628
BciVI GTATCC 1 cut(s) 1260
BclI TGATCA 2 cut(s) 340, 472
BcoDI GTCTC 3 cut(s) 321, 377, 759
BfaI CTAG 3 cut(s) 11, 1022, 1421
BfmI CTRYAG 4 cut(s) 596, 1002, 1572, 1610
BfuI GTATCC 1 cut(s) 1260
BisI GCNGC 5 cut(s) 792, 819, 822, 936, 1575
BlsI GCNGC 5 cut(s) 793, 820, 823, 937, 1576
BmcAI AGTACT 2 cut(s) 659, 1397
Bme1390I CCNGG 5 cut(s) 300, 311, 1149, 1155, 1628
Bme18I GGWCC 2 cut(s) 663, 1151
BmgT120I GGNCC 2 cut(s) 663, 1151
BmrFI CCNGG 5 cut(s) 300, 311, 1149, 1155, 1628
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 3 cut(s) 227, 484, 1053
BmuI ACTGGG 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 369
BpiI GAAGAC 4 cut(s) 277, 369, 570, 930
BpmI CTGGAG 2 cut(s) 783, 1079
BpuEI CTTGAG 3 cut(s) 1239, 1420, 1535
Bsa29I ATCGAT 1 cut(s) 492
BsaBI GATNNNNATC 1 cut(s) 574
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 988, 1626
BsaXI ACNNNNNCTCC 4 cut(s) 636, 666, 1437, 1467
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 417, 598, 1154
Bse1I ACTGG 5 cut(s) 281, 665, 766, 971, 1107
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 4 cut(s) 330, 730, 786, 1475
Bse8I GATNNNNATC 1 cut(s) 574
BseBI CCWGG 5 cut(s) 300, 311, 1149, 1155, 1628
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 988, 1626
BseGI GGATG 4 cut(s) 218, 286, 319, 882
BseJI GATNNNNATC 1 cut(s) 574
BseLI CCNNNNNNNGG 4 cut(s) 44, 417, 598, 1154
BseMI GCAATG 4 cut(s) 330, 730, 786, 1475
BseMII CTCAG 4 cut(s) 566, 783, 930, 962
BseNI ACTGG 5 cut(s) 281, 665, 766, 971, 1107
BseRI GAGGAG 1 cut(s) 1355
BseSI GKGCMC 2 cut(s) 1420, 1627
BseXI GCAGC 5 cut(s) 803, 808, 830, 947, 1586
BsgI GTGCAG 1 cut(s) 1176
BshFI GGCC 1 cut(s) 48
BshVI ATCGAT 1 cut(s) 492
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 4 cut(s) 44, 417, 598, 1154
BsmAI GTCTC 3 cut(s) 321, 377, 759
BsmFI GGGAC 1 cut(s) 573
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 5 cut(s) 270, 681, 949, 1420, 1627
Bsp143I GATC 4 cut(s) 340, 472, 575, 1054
Bsp19I CCATGG 1 cut(s) 988
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 4 cut(s) 565, 782, 931, 961
BspDI ATCGAT 1 cut(s) 492
BspHI TCATGA 2 cut(s) 375, 882
BspMAI CTGCAG 4 cut(s) 600, 1006, 1576, 1614
BspPI GGATC 1 cut(s) 583
BspQI GCTCTTC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 4 cut(s) 330, 730, 786, 1475
BsrI ACTGG 5 cut(s) 281, 665, 766, 971, 1107
BssECI CCNNGG 2 cut(s) 988, 1626
BssMI GATC 4 cut(s) 340, 472, 575, 1054
BssT1I CCWWGG 1 cut(s) 988
Bst2UI CCWGG 5 cut(s) 300, 311, 1149, 1155, 1628
Bst4CI ACNGT 5 cut(s) 88, 404, 1127, 1371, 1513
Bst6I CTCTTC 2 cut(s) 229, 504
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 8 cut(s) 39, 506, 552, 584, 769, 939, 948, 973
BstDSI CCRYGG 1 cut(s) 988
BstENI CCTNNNNNAGG 2 cut(s) 42, 596
BstF5I GGATG 4 cut(s) 218, 286, 319, 882
BstKTI GATC 4 cut(s) 343, 475, 578, 1057
BstMAI GTCTC 3 cut(s) 321, 377, 759
BstMBI GATC 4 cut(s) 340, 472, 575, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 33, 104, 113, 944
BstNI CCWGG 5 cut(s) 300, 311, 1149, 1155, 1628
BstPAI GACNNNNGTC 1 cut(s) 369
BstSCI CCNGG 5 cut(s) 298, 309, 1147, 1153, 1626
BstSFI CTRYAG 4 cut(s) 596, 1002, 1572, 1610
BstSLI GKGCMC 2 cut(s) 1420, 1627
BstV1I GCAGC 5 cut(s) 803, 808, 830, 947, 1586
BstV2I GAAGAC 4 cut(s) 277, 369, 570, 930
BstX2I RGATCY 1 cut(s) 575
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 1 cut(s) 575
Bsu15I ATCGAT 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 552
BsuI GTATCC 1 cut(s) 1260
BsuRI GGCC 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 988
BtsCI GGATG 4 cut(s) 218, 286, 319, 882
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 84
Cac8I GCNNGC 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 2 cut(s) 375, 882
Cfr13I GGNCC 2 cut(s) 663, 1151
ClaI ATCGAT 1 cut(s) 492
Csp6I GTAC 8 cut(s) 303, 346, 658, 756, 1294, 1396, 1462, 1582
CviQI GTAC 8 cut(s) 303, 346, 658, 756, 1294, 1396, 1462, 1582
DdeI CTNAG 8 cut(s) 39, 506, 552, 584, 769, 939, 948, 973
DpnI GATC 4 cut(s) 342, 474, 577, 1056
DpnII GATC 4 cut(s) 340, 472, 575, 1054
Eam1104I CTCTTC 2 cut(s) 229, 504
EarI CTCTTC 2 cut(s) 229, 504
Eco130I CCWWGG 1 cut(s) 988
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 3 cut(s) 270, 681, 949
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 663, 1151
Eco57I CTGAAG 3 cut(s) 485, 1088, 1212
Eco81I CCTNAGG 1 cut(s) 552
EcoNI CCTNNNNNAGG 2 cut(s) 42, 596
EcoRII CCWGG 5 cut(s) 298, 309, 1147, 1153, 1626
EcoT14I CCWWGG 1 cut(s) 988
EcoT22I ATGCAT 1 cut(s) 1014
EcoT38I GRGCYC 3 cut(s) 270, 681, 949
ErhI CCWWGG 1 cut(s) 988
FalI AAGNNNNNCTT 2 cut(s) 766, 798
FaqI GGGAC 1 cut(s) 573
FbaI TGATCA 2 cut(s) 340, 472
FblI GTMKAC 1 cut(s) 1209
Fnu4HI GCNGC 5 cut(s) 792, 819, 822, 936, 1575
FokI GGATG 4 cut(s) 205, 293, 326, 889
FriOI GRGCYC 3 cut(s) 270, 681, 949
Fsp4HI GCNGC 5 cut(s) 792, 819, 822, 936, 1575
FspBI CTAG 3 cut(s) 11, 1022, 1421
GluI GCNGC 5 cut(s) 792, 819, 822, 936, 1575
GsuI CTGGAG 2 cut(s) 783, 1079
HaeIII GGCC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 9 cut(s) 64, 148, 390, 513, 651, 767, 1206, 1345, 1566
HphI GGTGA 1 cut(s) 1520
Hpy166II GTNNAC 5 cut(s) 394, 457, 666, 1145, 1210
Hpy188I TCNGA 5 cut(s) 147, 252, 749, 772, 852
Hpy188III TCNNGA 8 cut(s) 68, 359, 376, 554, 883, 1058, 1384, 1552
Hpy8I GTNNAC 5 cut(s) 394, 457, 666, 1145, 1210
Hpy99I CGWCG 1 cut(s) 1487
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 5 cut(s) 88, 404, 1127, 1371, 1513
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 104, 113, 944
HpyF3I CTNAG 8 cut(s) 39, 506, 552, 584, 769, 939, 948, 973
Ksp22I TGATCA 2 cut(s) 340, 472
Kzo9I GATC 4 cut(s) 340, 472, 575, 1054
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 4 cut(s) 242, 1025, 1157, 1445
Lsp1109I GCAGC 5 cut(s) 803, 808, 830, 947, 1586
LweI GCATC 3 cut(s) 227, 484, 1053
MaeI CTAG 3 cut(s) 11, 1022, 1421
MaeIII GTNAC 4 cut(s) 3, 526, 1273, 1406
MalI GATC 4 cut(s) 342, 474, 577, 1056
MboI GATC 4 cut(s) 340, 472, 575, 1054
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 5 cut(s) 270, 681, 949, 1420, 1627
MluCI AATT 7 cut(s) 426, 635, 751, 981, 1049, 1351, 1589
MlyI GAGTC 5 cut(s) 399, 660, 761, 1215, 1560
Mph1103I ATGCAT 1 cut(s) 1014
MseI TTAA 1 cut(s) 1619
MslI CAYNNNNRTG 2 cut(s) 89, 875
MspA1I CMGCKG 2 cut(s) 821, 938
MspR9I CCNGG 5 cut(s) 300, 311, 1149, 1155, 1628
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 5 cut(s) 300, 311, 1149, 1155, 1628
MwoI GCNNNNNNNGC 4 cut(s) 33, 104, 113, 944
NcoI CCATGG 1 cut(s) 988
NdeII GATC 4 cut(s) 340, 472, 575, 1054
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 3, 526
NsiI ATGCAT 1 cut(s) 1014
PagI TCATGA 2 cut(s) 375, 882
PceI AGGCCT 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 1488
PctI GAATGC 1 cut(s) 892
PfeI GAWTC 4 cut(s) 64, 148, 513, 1345
PflMI CCANNNNNTGG 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 5 cut(s) 793, 820, 823, 937, 1576
PleI GAGTC 5 cut(s) 398, 659, 761, 1214, 1560
PpsI GAGTC 5 cut(s) 398, 659, 761, 1214, 1560
PshAI GACNNNNGTC 1 cut(s) 369
Psp6I CCWGG 5 cut(s) 298, 309, 1147, 1153, 1626
PspGI CCWGG 5 cut(s) 298, 309, 1147, 1153, 1626
PspPI GGNCC 2 cut(s) 663, 1151
PstI CTGCAG 4 cut(s) 600, 1006, 1576, 1614
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 575
PvuII CAGCTG 2 cut(s) 821, 938
RsaI GTAC 8 cut(s) 304, 347, 659, 757, 1295, 1397, 1463, 1583
RsaNI GTAC 8 cut(s) 303, 346, 658, 756, 1294, 1396, 1462, 1582
RseI CAYNNNNRTG 2 cut(s) 89, 875
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 1 cut(s) 1619
SatI GCNGC 5 cut(s) 792, 819, 822, 936, 1575
Sau3AI GATC 4 cut(s) 340, 472, 575, 1054
Sau96I GGNCC 2 cut(s) 663, 1151
ScaI AGTACT 2 cut(s) 659, 1397
SchI GAGTC 5 cut(s) 399, 660, 761, 1215, 1560
ScrFI CCNGG 5 cut(s) 300, 311, 1149, 1155, 1628
SduI GDGCHC 5 cut(s) 270, 681, 949, 1420, 1627
SfaNI GCATC 3 cut(s) 227, 484, 1053
SfcI CTRYAG 4 cut(s) 596, 1002, 1572, 1610
SinI GGWCC 2 cut(s) 663, 1151
SmiMI CAYNNNNRTG 2 cut(s) 89, 875
SmlI CTYRAG 3 cut(s) 1254, 1399, 1550
SmoI CTYRAG 3 cut(s) 1254, 1399, 1550
Sse9I AATT 7 cut(s) 426, 635, 751, 981, 1049, 1351, 1589
SseBI AGGCCT 1 cut(s) 48
SspMI CTAG 3 cut(s) 11, 1022, 1421
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 5 cut(s) 298, 309, 1147, 1153, 1626
StyI CCWWGG 1 cut(s) 988
TaaI ACNGT 5 cut(s) 88, 404, 1127, 1371, 1513
TaqI TCGA 3 cut(s) 492, 1482, 1491
TasI AATT 7 cut(s) 426, 635, 751, 981, 1049, 1351, 1589
TatI WGTACW 3 cut(s) 657, 755, 1395
TfiI GAWTC 4 cut(s) 64, 148, 513, 1345
Tru1I TTAA 1 cut(s) 1619
Tru9I TTAA 1 cut(s) 1619
TscAI CASTG 2 cut(s) 38, 91
TseFI GTSAC 2 cut(s) 3, 526
TseI GCWGC 5 cut(s) 791, 818, 821, 935, 1574
Tsp45I GTSAC 2 cut(s) 3, 526
TspDTI ATGAA 8 cut(s) 101, 392, 478, 775, 899, 915, 1075, 1377
TspRI CASTG 2 cut(s) 38, 91
Van91I CCANNNNNTGG 1 cut(s) 417
VpaK11BI GGWCC 2 cut(s) 663, 1151
XagI CCTNNNNNAGG 2 cut(s) 42, 596
XapI RAATTY 4 cut(s) 426, 635, 1049, 1351
XcmI CCANNNNNNNNNTGG 2 cut(s) 1054, 1538
XmiI GTMKAC 1 cut(s) 1209
XspI CTAG 3 cut(s) 11, 1022, 1421
ZrmI AGTACT 2 cut(s) 659, 1397
Zsp2I ATGCAT 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.