Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2310818 .. 2311696

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCATGAGCTTCTAGGAGCTGATTTGCCTGTGTCTTCCAAGTTTGATCTGGAGATGCTTAAGAATGGATTAGACTTCATCGGTATCAATCACTATACCAGTTTTTATGCAAAAGACTGTATGTTTTCTCCATGTGAACCAGGACCAGGAGCTGCAAGGATAGAGGGGTATACTTTGAGAACTGCCCAAAAAGATGGAGTCTACATTGGAGAACCAGTATATAATCTCATCTTAACTAAAGGAGCAGATGTAAGAGGGTACTTCGTGTGGTCATTGCTTGATGATTTCGAGTGGACAAGTGGATTTATGGTCAAGTTTGGACTTCACCGTGTTGATTATGGCACTCTCAAGAGAACTCCAAGACTCTCTGCAGCTTGGTACAGACAATTTATCACTAATCACACCCTTCAGATTTTAAGCGCCCAGGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

144

Amino Acids

16.42

Weight (kDa)

6.05

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	75 - 134	1.7e-17	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	170, 201
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	260, 380
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflII	CTTAAG	1 cut(s)	59
AjnI	CCWGG	3 cut(s)	139, 145, 423
AluBI	AGCT	4 cut(s)	10, 20, 152, 374
AluI	AGCT	4 cut(s)	10, 20, 152, 374
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	152, 371
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	139, 383
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	3 cut(s)	141, 147, 425
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	59
BisI	GCNGC	2 cut(s)	153, 372
BlsI	GCNGC	2 cut(s)	154, 373
Bme1390I	CCNGG	3 cut(s)	141, 147, 425
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	3 cut(s)	141, 147, 425
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	423
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	99, 215
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	3 cut(s)	141, 147, 425
BseDI	CCNNGG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	99, 215
BseXI	GCAGC	2 cut(s)	139, 383
BslI	CCNNNNNNNGG	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	373
BspTI	CTTAAG	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	99, 215
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	1 cut(s)	46
BssNAI	GTATAC	1 cut(s)	171
Bst1107I	GTATAC	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	141, 147, 425
Bst4CI	ACNGT	2 cut(s)	119, 329
BstAFI	CTTAAG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstNI	CCWGG	3 cut(s)	141, 147, 425
BstSCI	CCNGG	3 cut(s)	139, 145, 423
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	139, 383
BstV2I	GAAGAC	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstZ17I	GTATAC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	259, 379
CviAII	CATG	2 cut(s)	5, 132
CviJI	RGCY	4 cut(s)	10, 20, 152, 374
CviKI_1	RGCY	4 cut(s)	10, 20, 152, 374
CviQI	GTAC	2 cut(s)	259, 379
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	139, 145, 423
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 135
FatI	CATG	2 cut(s)	4, 131
FblI	GTMKAC	2 cut(s)	170, 201
Fnu4HI	GCNGC	2 cut(s)	153, 372
Fsp4HI	GCNGC	2 cut(s)	153, 372
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	2 cut(s)	153, 372
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	423
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	2 cut(s)	8, 135
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	2 cut(s)	198, 363
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	4 cut(s)	137, 171, 202, 294
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	2 cut(s)	50, 349
Hpy8I	GTNNAC	4 cut(s)	137, 171, 202, 294
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	2 cut(s)	119, 329
HpyCH4V	TGCA	4 cut(s)	4, 110, 155, 371
Hsp92II	CATG	2 cut(s)	8, 135
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	3 cut(s)	17, 149, 242
LpnPI	CCDG	9 cut(s)	35, 42, 112, 126, 132, 153, 159, 228, 410
Lsp1109I	GCAGC	2 cut(s)	139, 383
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	14
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	27
MluCI	AATT	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	207, 357
MnlI	CCTC	2 cut(s)	157, 248
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	60, 233, 416
MspCI	CTTAAG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	141, 147, 425
MvaI	CCWGG	3 cut(s)	141, 147, 425
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	8, 135
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	154, 373
PleI	GAGTC	2 cut(s)	206, 357
PpsI	GAGTC	2 cut(s)	206, 357
Psp6I	CCWGG	3 cut(s)	139, 145, 423
PspGI	CCWGG	3 cut(s)	139, 145, 423
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	260, 380
RsaNI	GTAC	2 cut(s)	259, 379
SaqAI	TTAA	3 cut(s)	60, 233, 416
SatI	GCNGC	2 cut(s)	153, 372
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	207, 357
ScrFI	CCNGG	3 cut(s)	141, 147, 425
SetI	ASST	4 cut(s)	12, 22, 154, 376
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	59, 347
SmoI	CTYRAG	2 cut(s)	59, 347
Sse9I	AATT	1 cut(s)	386
SspI	AATATT	1 cut(s)	431
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	139, 145, 423
TaaI	ACNGT	2 cut(s)	119, 329
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	386
Tru1I	TTAA	3 cut(s)	60, 233, 416
Tru9I	TTAA	3 cut(s)	60, 233, 416
TseI	GCWGC	2 cut(s)	152, 371
TspDTI	ATGAA	1 cut(s)	67
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmiI	GTMKAC	2 cut(s)	170, 201
XspI	CTAG	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.