Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

1241491 .. 1247952

Gene Structure 6462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02481.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGGAGGTTTTATCAGTATCTCATGCTTTCCTTATGACTGAGATCATGTGTTTTTCGATTCTTGTTGTGTCATGTAATCACATATCCTTGAAAGGAAACTCCCAGAGCAACTTTCTCTTTGGAACCGCATCCTCTTCTTATCAGTTTGAGGGAGCTTTTCTGAATGATGGTAAAAGTCTCAACAACTGGGATGTCTTCAGTCACAAGCCTGGTAATATCCTGGATGGAACTAATGGAGACATTGCTGTTGATCAGTACCATCTTTATCAGGAAGACTTGGATCTCATGGATTACATTGGAGTCAACAGCTACCGTTTTTCTATATCATGGGCAAGAATTTTACCCAAAGGAAGATTTGGAAAAGTGAACAGAGCTGGCATTGATCACTATAACAAGCTCATCGATGCTCTTCTGCTTAGAGGAATCCAGCCCTTTGTGACATTGACTCACTACGACATACCTCAGGAACTTGAAGACAGATATGGAGCTTGGCTAAGTCCTCTACTGCAGGAAGATTTTAGATATTATGCAGATATATGTTTCAAATTCTTTGGAGACAGAGTCAAGTACTGGTCTACTTTCAACGAGCCCAATGTTCTGGCCATTCGTGGATATCGGTCTGGGATTTACCCACCGTCTCATTGCTCTCTCCCTTTTGGGAATTGTATTAGTGGAGATTCAGAAAGAGAGCCTTTCATTGCAGCTCATAACATCATTCTATCCCATGCAGCCGCTGTGAACGTATACCGAACCAAATATCAGAAAAAACAAGAAGGGAGCATTGGAATAGTGATGAATGCTGTATGGTATGAACCCATCAGCAGCTCTTTAGAAGACAAATTAGCAGCTGAAAGGGCTCAGTCTTTCTATATTAACTGGTTCTTAGATCCAATTGTACATGGAAGATACCCTGCAGAAATGCATGAGCTTCTAGGAGATGATTTGCCTGAGTTTTCAATGTTTGATATGGAGATGCTGAAGAATGGACTAGACTTCATTGGTATCAATCACTACACAAGTTTTTACTCAAAAGACTGTATGATTTCTCCATGTGAACCAGGACCAGGAGTTTCAAGGACAGAGGGTTATGCTCTCAGAACTGCACAAAAAGATGGAATCTACATTGGAGAGCCAACTGCAGTTGATTGGCTATATGTGCATCCTCAAGGAATGGAGAAGATGGTAACATACATAAAAGAGAGATACAATAACACACCAATGTTTATTACAGAAAATGGGTATGCTGAGGAGGCAAACTCAAATACCACAAATGAAGAACAGTTCAATGATGTCAAGAGAGTAGAGTACATGAGAAGTTACTTACAGGCACTAGCAGACACAATGAGAACTAAAGGAGCAGATGTAAGAGGGTATTTCGTGTGGTCATTGCTCGACAATTTTGAGTGGACTAGTGGATATACGGTACAGTTTGGACTTCACCATGTTGATAATGTCACTCTCAAGAGAACTCCAAGACTCTCTGCAGATTGGTACAGACAATTTATCGTTAATAACACCCTGCAGATTTTAAGTGCCCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

515

Amino Acids

58.94

Weight (kDa)

5.31

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	36 - 413	2e-118	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	575, 744
AciI	CCGC	2 cut(s)	126, 732
AclWI	GGATC	2 cut(s)	288, 881
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	2 cut(s)	336, 545
AcuI	CTGAAG	2 cut(s)	181, 998
AfaI	GTAC	6 cut(s)	257, 569, 897, 1307, 1425, 1493
AfiI	CCNNNNNNNGG	1 cut(s)	1064
AgsI	TTSAA	7 cut(s)	91, 473, 544, 583, 957, 1074, 1285
AhlI	ACTAGT	1 cut(s)	1409
AjnI	CCWGG	5 cut(s)	208, 219, 1057, 1063, 1536
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	9 cut(s)	155, 309, 374, 397, 488, 704, 825, 848, 928
AluI	AGCT	9 cut(s)	155, 309, 374, 397, 488, 704, 825, 848, 928
Alw26I	GTCTC	4 cut(s)	182, 231, 549, 642
AlwI	GGATC	2 cut(s)	288, 881
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	1 cut(s)	600
ApeKI	GCWGC	4 cut(s)	701, 728, 822, 845
ApoI	RAATTY	2 cut(s)	336, 545
AspS9I	GGNCC	1 cut(s)	1061
AsuHPI	GGTGA	1 cut(s)	1430
AvaII	GGWCC	1 cut(s)	1061
AxyI	CCTNAGG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	1537
BalI	TGGCCA	1 cut(s)	602
BanII	GRGCYC	2 cut(s)	591, 859
BbsI	GAAGAC	4 cut(s)	187, 279, 480, 840
BbvCI	CCTCAGC	1 cut(s)	1245
BbvI	GCAGC	4 cut(s)	713, 740, 834, 857
BccI	CCATC	6 cut(s)	161, 218, 267, 824, 1106, 1174
BciT130I	CCWGG	5 cut(s)	210, 221, 1059, 1065, 1538
BclI	TGATCA	2 cut(s)	250, 382
BcoDI	GTCTC	4 cut(s)	182, 231, 549, 642
BcuI	ACTAGT	1 cut(s)	1409
BfaI	CTAG	4 cut(s)	932, 989, 1331, 1410
BfmI	CTRYAG	5 cut(s)	506, 912, 1137, 1482, 1520
BisI	GCNGC	5 cut(s)	702, 729, 732, 823, 846
BlsI	GCNGC	5 cut(s)	703, 730, 733, 824, 847
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	5 cut(s)	210, 221, 1059, 1065, 1538
Bme18I	GGWCC	1 cut(s)	1061
BmgT120I	GGNCC	1 cut(s)	1061
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	5 cut(s)	210, 221, 1059, 1065, 1538
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	4 cut(s)	137, 394, 963, 1168
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	4 cut(s)	187, 279, 480, 840
BplI	GAGNNNNNCTC	2 cut(s)	1241, 1273
Bpu10I	CCTNAGC	1 cut(s)	1245
BpuEI	CTTGAG	2 cut(s)	1149, 1445
Bsa29I	ATCGAT	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	1536
BsaXI	ACNNNNNCTCC	4 cut(s)	546, 576, 1347, 1377
Bsc4I	CCNNNNNNNGG	1 cut(s)	1064
Bse1I	ACTGG	3 cut(s)	191, 575, 881
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	4 cut(s)	240, 640, 696, 1385
BseBI	CCWGG	5 cut(s)	210, 221, 1059, 1065, 1538
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	1536
BseGI	GGATG	4 cut(s)	128, 196, 229, 1159
BseLI	CCNNNNNNNGG	1 cut(s)	1064
BseMI	GCAATG	4 cut(s)	240, 640, 696, 1385
BseMII	CTCAG	6 cut(s)	30, 476, 872, 939, 1108, 1236
BseNI	ACTGG	3 cut(s)	191, 575, 881
BseRI	GAGGAG	1 cut(s)	1262
BseSI	GKGCMC	1 cut(s)	1537
BseXI	GCAGC	4 cut(s)	713, 740, 834, 857
BsgI	GTGCAG	1 cut(s)	1086
BshFI	GGCC	1 cut(s)	602
BshVI	ATCGAT	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	1064
BsmAI	GTCTC	4 cut(s)	182, 231, 549, 642
BsmBI	CGTCTC	1 cut(s)	642
BsmI	GAATGC	1 cut(s)	802
BsnI	GGCC	1 cut(s)	602
Bsp1286I	GDGCHC	3 cut(s)	591, 859, 1537
Bsp1407I	TGTACA	1 cut(s)	895
Bsp143I	GATC	5 cut(s)	42, 250, 280, 382, 886
BspACI	CCGC	2 cut(s)	126, 732
BspANI	GGCC	1 cut(s)	602
BspCNI	CTCAG	6 cut(s)	31, 475, 871, 940, 1107, 1237
BspDI	ATCGAT	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	5 cut(s)	510, 916, 1141, 1486, 1524
BspPI	GGATC	2 cut(s)	288, 881
BspQI	GCTCTTC	1 cut(s)	414
BsrDI	GCAATG	4 cut(s)	240, 640, 696, 1385
BsrGI	TGTACA	1 cut(s)	895
BsrI	ACTGG	3 cut(s)	191, 575, 881
BssECI	CCNNGG	1 cut(s)	1536
BssMI	GATC	5 cut(s)	42, 250, 280, 382, 886
BssNAI	GTATAC	1 cut(s)	745
Bst1107I	GTATAC	1 cut(s)	745
Bst2UI	CCWGG	5 cut(s)	210, 221, 1059, 1065, 1538
Bst4CI	ACNGT	6 cut(s)	314, 636, 1037, 1281, 1423, 1428
Bst6I	CTCTTC	2 cut(s)	139, 414
BstAUI	TGTACA	1 cut(s)	895
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	9 cut(s)	39, 416, 462, 494, 858, 883, 948, 1094, 1245
BstF5I	GGATG	4 cut(s)	128, 196, 229, 1159
BstKTI	GATC	5 cut(s)	45, 253, 283, 385, 889
BstMAI	GTCTC	4 cut(s)	182, 231, 549, 642
BstMBI	GATC	5 cut(s)	42, 250, 280, 382, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	854, 1156, 1250
BstNI	CCWGG	5 cut(s)	210, 221, 1059, 1065, 1538
BstSCI	CCNGG	5 cut(s)	208, 219, 1057, 1063, 1536
BstSFI	CTRYAG	5 cut(s)	506, 912, 1137, 1482, 1520
BstSLI	GKGCMC	1 cut(s)	1537
BstV1I	GCAGC	4 cut(s)	713, 740, 834, 857
BstV2I	GAAGAC	4 cut(s)	187, 279, 480, 840
BstX2I	RGATCY	2 cut(s)	280, 886
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	2 cut(s)	280, 886
BstZ17I	GTATAC	1 cut(s)	745
Bsu15I	ATCGAT	1 cut(s)	402
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	602
BsuTUI	ATCGAT	1 cut(s)	402
BtsCI	GGATG	4 cut(s)	128, 196, 229, 1159
Cac8I	GCNNGC	1 cut(s)	376
CaiI	CAGNNNCTG	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	1061
ClaI	ATCGAT	1 cut(s)	402
Csp6I	GTAC	6 cut(s)	256, 568, 896, 1306, 1424, 1492
CviQI	GTAC	6 cut(s)	256, 568, 896, 1306, 1424, 1492
DdeI	CTNAG	9 cut(s)	39, 416, 462, 494, 858, 883, 948, 1094, 1245
DpnI	GATC	5 cut(s)	44, 252, 282, 384, 888
DpnII	GATC	5 cut(s)	42, 250, 280, 382, 886
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	2 cut(s)	139, 414
EarI	CTCTTC	2 cut(s)	139, 414
Eco24I	GRGCYC	2 cut(s)	591, 859
Eco32I	GATATC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	1061
Eco57I	CTGAAG	2 cut(s)	181, 998
Eco81I	CCTNAGG	1 cut(s)	462
EcoRII	CCWGG	5 cut(s)	208, 219, 1057, 1063, 1536
EcoRV	GATATC	1 cut(s)	614
EcoT22I	ATGCAT	1 cut(s)	924
EcoT38I	GRGCYC	2 cut(s)	591, 859
Esp3I	CGTCTC	1 cut(s)	642
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FbaI	TGATCA	2 cut(s)	250, 382
FblI	GTMKAC	2 cut(s)	575, 744
Fnu4HI	GCNGC	5 cut(s)	702, 729, 732, 823, 846
FokI	GGATG	4 cut(s)	115, 203, 236, 1146
FriOI	GRGCYC	2 cut(s)	591, 859
Fsp4HI	GCNGC	5 cut(s)	702, 729, 732, 823, 846
FspBI	CTAG	4 cut(s)	932, 989, 1331, 1410
GluI	GCNGC	5 cut(s)	702, 729, 732, 823, 846
HaeIII	GGCC	1 cut(s)	602
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	8 cut(s)	58, 300, 423, 445, 561, 677, 1116, 1476
HphI	GGTGA	1 cut(s)	1430
Hpy166II	GTNNAC	7 cut(s)	304, 367, 576, 739, 745, 1055, 1407
Hpy188I	TCNGA	4 cut(s)	162, 682, 762, 1097
Hpy188III	TCNNGA	4 cut(s)	269, 464, 1294, 1462
Hpy8I	GTNNAC	7 cut(s)	304, 367, 576, 739, 745, 1055, 1407
HpyAV	CCTTC	1 cut(s)	767
HpyCH4III	ACNGT	6 cut(s)	314, 636, 1037, 1281, 1423, 1428
HpyCH4IV	ACGT	1 cut(s)	741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	854, 1156, 1250
HpyF3I	CTNAG	9 cut(s)	39, 416, 462, 494, 858, 883, 948, 1094, 1245
HpySE526I	ACGT	1 cut(s)	741
Ksp22I	TGATCA	2 cut(s)	250, 382
Kzo9I	GATC	5 cut(s)	42, 250, 280, 382, 886
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	4 cut(s)	152, 485, 777, 1355
Lsp1109I	GCAGC	4 cut(s)	713, 740, 834, 857
LweI	GCATC	4 cut(s)	137, 394, 963, 1168
MaeI	CTAG	4 cut(s)	932, 989, 1331, 1410
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	5 cut(s)	200, 436, 1183, 1316, 1453
MalI	GATC	5 cut(s)	44, 252, 282, 384, 888
MboI	GATC	5 cut(s)	42, 250, 280, 382, 886
MfeI	CAATTG	1 cut(s)	891
MflI	RGATCY	2 cut(s)	280, 886
MhlI	GDGCHC	3 cut(s)	591, 859, 1537
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	7 cut(s)	336, 545, 661, 839, 891, 1396, 1499
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	4 cut(s)	309, 439, 570, 1470
Mox20I	TGGCCA	1 cut(s)	602
Mph1103I	ATGCAT	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	3 cut(s)	873, 1509, 1529
MslI	CAYNNNNRTG	1 cut(s)	1217
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	734, 848
MspR9I	CCNGG	5 cut(s)	210, 221, 1059, 1065, 1538
MunI	CAATTG	1 cut(s)	891
Mva1269I	GAATGC	1 cut(s)	802
MvaI	CCWGG	5 cut(s)	210, 221, 1059, 1065, 1538
MwoI	GCNNNNNNNGC	3 cut(s)	854, 1156, 1250
NdeII	GATC	5 cut(s)	42, 250, 280, 382, 886
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	200, 436, 1453
NsiI	ATGCAT	1 cut(s)	924
PciSI	GCTCTTC	1 cut(s)	414
PctI	GAATGC	1 cut(s)	802
PfeI	GAWTC	4 cut(s)	58, 423, 677, 1116
PflFI	GACNNNGTC	1 cut(s)	560
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	703, 730, 733, 824, 847
PleI	GAGTC	4 cut(s)	308, 439, 569, 1470
PpsI	GAGTC	4 cut(s)	308, 439, 569, 1470
Psp6I	CCWGG	5 cut(s)	208, 219, 1057, 1063, 1536
PspGI	CCWGG	5 cut(s)	208, 219, 1057, 1063, 1536
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	1061
PstI	CTGCAG	5 cut(s)	510, 916, 1141, 1486, 1524
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	2 cut(s)	280, 886
PsyI	GACNNNGTC	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	6 cut(s)	257, 569, 897, 1307, 1425, 1493
RsaNI	GTAC	6 cut(s)	256, 568, 896, 1306, 1424, 1492
RseI	CAYNNNNRTG	1 cut(s)	1217
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	873, 1509, 1529
SatI	GCNGC	5 cut(s)	702, 729, 732, 823, 846
Sau3AI	GATC	5 cut(s)	42, 250, 280, 382, 886
Sau96I	GGNCC	1 cut(s)	1061
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	4 cut(s)	309, 439, 570, 1470
ScrFI	CCNGG	5 cut(s)	210, 221, 1059, 1065, 1538
SduI	GDGCHC	3 cut(s)	591, 859, 1537
SfaNI	GCATC	4 cut(s)	137, 394, 963, 1168
SfcI	CTRYAG	5 cut(s)	506, 912, 1137, 1482, 1520
SinI	GGWCC	1 cut(s)	1061
SmiMI	CAYNNNNRTG	1 cut(s)	1217
SmlI	CTYRAG	2 cut(s)	1164, 1460
SmoI	CTYRAG	2 cut(s)	1164, 1460
SpeI	ACTAGT	1 cut(s)	1409
Sse9I	AATT	7 cut(s)	336, 545, 661, 839, 891, 1396, 1499
SsiI	CCGC	2 cut(s)	126, 732
SspMI	CTAG	4 cut(s)	932, 989, 1331, 1410
StyD4I	CCNGG	5 cut(s)	208, 219, 1057, 1063, 1536
TaaI	ACNGT	6 cut(s)	314, 636, 1037, 1281, 1423, 1428
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	3 cut(s)	56, 402, 1392
TaqII	GACCGA	1 cut(s)	606
TasI	AATT	7 cut(s)	336, 545, 661, 839, 891, 1396, 1499
TatI	WGTACW	3 cut(s)	567, 895, 1305
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	4 cut(s)	58, 423, 677, 1116
Tru1I	TTAA	3 cut(s)	873, 1509, 1529
Tru9I	TTAA	3 cut(s)	873, 1509, 1529
TseFI	GTSAC	3 cut(s)	200, 436, 1453
TseI	GCWGC	4 cut(s)	701, 728, 822, 845
Tsp45I	GTSAC	3 cut(s)	200, 436, 1453
TspDTI	ATGAA	5 cut(s)	685, 809, 825, 985, 1287
Tth111I	GACNNNGTC	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	1061
XapI	RAATTY	2 cut(s)	336, 545
XmiI	GTMKAC	2 cut(s)	575, 744
XspI	CTAG	4 cut(s)	932, 989, 1331, 1410
ZrmI	AGTACT	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.