Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Forward (+)

93356189 .. 93357169

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGAACTAAGGGAGCAGATGTAAGAGGGTATTTCGTGTGGTCATTGCTTGATGATTTTGAGTGGACAAGTGGATATACGGTCAAGTTTGGACTTCACCATGTTGATTATGGCACTCTCAAGAGAACTCCAAGACTCTCTGCAGCTTGGTACGGACAATTTATTGCTAATAACACCCTGCAGATTTTGAGTGCCCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

67

Amino Acids

7.71

Weight (kDa)

8.11

Isoelectric Point (pI)

-4.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	4 - 58	1.3e-19	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	197
BfmI	CTRYAG	2 cut(s)	141, 179
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse3DI	GCAATG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	196
BspMAI	CTGCAG	2 cut(s)	145, 183
BsrDI	GCAATG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	2 cut(s)	141, 179
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	104
FaiI	YATR	3 cut(s)	78, 102, 111
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	135
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	143, 181
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	2 cut(s)	182, 191
Lsp1109I	GCAGC	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
NlaIII	CATG	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PstI	CTGCAG	2 cut(s)	145, 183
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SatI	GCNGC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	141, 179
SgeI	CNNG	9 cut(s)	49, 62, 81, 97, 113, 133, 144, 159, 190
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	82
TasI	AATT	1 cut(s)	158
TseI	GCWGC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.