Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Forward (+)

57042424 .. 57044836

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0406700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTGGGTGGCAAACGATATGGTGCTTCTTCGGATATGAATGCTGTTTTTCAACACGAAAGGCCTCCTTGCTCTTCTGACGTTCTCGAGTCTCTTTGGATTCCCACTTCATCTTCATCTTTTCATGGTTCAAATTCAATGGTCAATTTTGAAAATGTTAGCGGTGGAGACTCCATGGACAAGTCACTCTTCCAACCTATTGATAAAGAAGAAAATGGGGATGACGATTACGAAGGTAGCCTGCTGCATCAACCCGGAAAGAAAAGACGACTTACAGTTGATCAAGTTCAGTTTCTAGAGAAGAATTTTGAGCTAGAAAACAAGCTTGAACCAGATAGGAAAGTCCAACTTGCCAAAGAACTTAGCTTGGAGCCTCGCCAAATTGCAATTTGGTTTCAAAACCGGCGGGCTCGGTTTAAGACCAAGCAGCTCGAAAAGGACTATGACTCATTGAGAGCTAGCTATGACAAGCTCAAGGCTGATCATGATAAGCTACTAAAGCAGAATGGAAATTTGAAGAATGAGGTTGATTCCCTCAAGGACAAGTTGCTTTTGAGAGAGAAAGGAAAGGAAAATTTGGAGTCAAATGATGATGGAATCAATTCGCCAAAAATGGATATCCAAAATGCCATTCCAAATAATACTGCTGATGTTTATGTGCCGATTATGGTATGCAAGCAAGAAGATGCAAGTTCTGCCAAAAGTGATGTGTTCGACTCAGATAGTCCACATTGCACTGAAAACCATTCATTGTTGTTAGAGCCCACTACAACTGCTGATTCCTCTCATGGATTCGAACCTGCTGATCACTCAGATTTCTCACAAGATAATGAAGATGACAACAGCCTCACCGGAAGCCTTTTGCATTTGCCACCACCTTGCTTTTTAAAACTCGAAGACATCTACTATGATGATCCCCCTGCAATTTCTAGTAATTTCGGATTAATCCCAGTAGAAGATCAGCATCCTTTTGGTTTTTGGCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0006725 GO:0008150 GO:0008152 GO:0008422 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0015926 GO:0016787 GO:0016798 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0047782 GO:0071704 GO:1901135 GO:1901360 GO:1901362 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

329

Amino Acids

37.17

Weight (kDa)

4.76

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	87 - 140	1.9e-15	Homeodomain
HALZ	PF02183	142 - 183	2.2e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	808
AciI	CCGC	2 cut(s)	162, 406
AclWI	GGATC	1 cut(s)	908
AcsI	RAATTY	4 cut(s)	133, 304, 511, 574
AgsI	TTSAA	7 cut(s)	53, 132, 138, 152, 329, 398, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	8 cut(s)	313, 325, 366, 430, 458, 462, 472, 493
AluI	AGCT	8 cut(s)	313, 325, 366, 430, 458, 462, 472, 493
Alw26I	GTCTC	2 cut(s)	96, 162
AlwI	GGATC	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	62, 980
ApeKI	GCWGC	2 cut(s)	244, 427
ApoI	RAATTY	4 cut(s)	133, 304, 511, 574
AseI	ATTAAT	1 cut(s)	944
Asp700I	GAANNNNTTC	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	981
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	841
AsuII	TTCGAA	1 cut(s)	795
AsuNHI	GCTAGC	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	86
BanII	GRGCYC	2 cut(s)	412, 765
BbsI	GAAGAC	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	231, 439
BccI	CCATC	1 cut(s)	587
BclI	TGATCA	3 cut(s)	280, 481, 805
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	96, 162
BfaI	CTAG	4 cut(s)	296, 314, 459, 930
BfuAI	ACCTGC	1 cut(s)	808
BisI	GCNGC	2 cut(s)	245, 428
BlsI	GCNGC	2 cut(s)	246, 429
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	981
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	944
BmsI	GCATC	3 cut(s)	256, 676, 973
BmtI	GCTAGC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	944
BpiI	GAAGAC	1 cut(s)	903
Bpu14I	TTCGAA	1 cut(s)	795
BpuEI	CTTGAG	2 cut(s)	458, 521
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	851
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	950
Bse3DI	GCAATG	1 cut(s)	730
Bse8I	GATNNNNATC	1 cut(s)	963
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	226, 964
BseJI	GATNNNNATC	1 cut(s)	963
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	2 cut(s)	732, 825
BseNI	ACTGG	1 cut(s)	950
BseXI	GCAGC	2 cut(s)	231, 439
BshFI	GGCC	2 cut(s)	64, 982
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	255, 403, 852
BsmAI	GTCTC	2 cut(s)	96, 162
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	64, 982
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	795
Bsp1286I	GDGCHC	2 cut(s)	412, 765
Bsp143I	GATC	5 cut(s)	280, 481, 805, 913, 958
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	162, 406
BspANI	GGCC	2 cut(s)	64, 982
BspCNI	CTCAG	2 cut(s)	731, 824
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	808
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	908
BspQI	GCTCTTC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	795
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	950
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	280, 481, 805, 913, 958
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	2 cut(s)	79, 194
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	795
BstC8I	GCNNGC	4 cut(s)	242, 408, 460, 677
BstDEI	CTNAG	3 cut(s)	362, 718, 811
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	226, 964
BstKTI	GATC	5 cut(s)	283, 484, 808, 916, 961
BstMAI	GTCTC	2 cut(s)	96, 162
BstMBI	GATC	5 cut(s)	280, 481, 805, 913, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	499, 695
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	231, 439
BstV2I	GAAGAC	1 cut(s)	903
BsuRI	GGCC	2 cut(s)	64, 982
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	226, 964
BtsIMutI	CAGTG	1 cut(s)	735
BveI	ACCTGC	1 cut(s)	808
Cac8I	GCNNGC	4 cut(s)	242, 408, 460, 677
CciI	TCATGA	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	981
CviAII	CATG	4 cut(s)	125, 175, 485, 788
DdeI	CTNAG	3 cut(s)	362, 718, 811
DpnI	GATC	5 cut(s)	282, 483, 807, 915, 960
DpnII	GATC	5 cut(s)	280, 481, 805, 913, 958
DraI	TTTAAA	1 cut(s)	888
Eam1104I	CTCTTC	2 cut(s)	79, 194
EarI	CTCTTC	2 cut(s)	79, 194
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	412, 765
Eco32I	GATATC	1 cut(s)	619
Eco88I	CYCGRG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	412, 765
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	128, 178, 488, 791
FalI	AAGNNNNNCTT	6 cut(s)	52, 84, 173, 205, 333, 365
FatI	CATG	4 cut(s)	124, 174, 484, 787
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	3 cut(s)	280, 481, 805
Fnu4HI	GCNGC	2 cut(s)	245, 428
FokI	GGATG	2 cut(s)	233, 951
FriOI	GRGCYC	2 cut(s)	412, 765
Fsp4HI	GCNGC	2 cut(s)	245, 428
FspBI	CTAG	4 cut(s)	296, 314, 459, 930
GluI	GCNGC	2 cut(s)	245, 428
HaeIII	GGCC	2 cut(s)	64, 982
HapII	CCGG	3 cut(s)	255, 403, 852
Hin1II	CATG	4 cut(s)	128, 178, 488, 791
HindIII	AAGCTT	1 cut(s)	323
HpaII	CCGG	3 cut(s)	255, 403, 852
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	5 cut(s)	34, 79, 721, 814, 941
Hpy188III	TCNNGA	3 cut(s)	86, 296, 485
Hpy8I	GTNNAC	1 cut(s)	728
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	7 cut(s)	247, 386, 675, 689, 735, 865, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	499, 695
HpyF3I	CTNAG	3 cut(s)	362, 718, 811
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	128, 178, 488, 791
Ksp22I	TGATCA	3 cut(s)	280, 481, 805
Kzo9I	GATC	5 cut(s)	280, 481, 805, 913, 958
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	254, 268, 345, 416, 813, 865, 933, 963
Lsp1109I	GCAGC	2 cut(s)	231, 439
LweI	GCATC	3 cut(s)	256, 676, 973
MaeI	CTAG	4 cut(s)	296, 314, 459, 930
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	5 cut(s)	282, 483, 807, 915, 960
MboI	GATC	5 cut(s)	280, 481, 805, 913, 958
MhlI	GDGCHC	2 cut(s)	412, 765
MlyI	GAGTC	5 cut(s)	98, 164, 440, 590, 710
MmeI	TCCRAC	2 cut(s)	217, 370
MnlI	CCTC	6 cut(s)	75, 384, 517, 545, 793, 857
MroXI	GAANNNNTTC	1 cut(s)	601
MseI	TTAA	3 cut(s)	417, 887, 944
MspI	CCGG	3 cut(s)	255, 403, 852
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	499, 695
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	280, 481, 805, 913, 958
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	4 cut(s)	128, 178, 488, 791
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	795
PaeR7I	CTCGAG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	601
PfeI	GAWTC	5 cut(s)	100, 530, 597, 779, 792
PkrI	GCNGC	2 cut(s)	246, 429
PleI	GAGTC	5 cut(s)	97, 164, 440, 589, 710
PpsI	GAGTC	5 cut(s)	97, 164, 440, 589, 710
PshBI	ATTAAT	1 cut(s)	944
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	981
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	417, 887, 944
SatI	GCNGC	2 cut(s)	245, 428
Sau3AI	GATC	5 cut(s)	280, 481, 805, 913, 958
Sau96I	GGNCC	1 cut(s)	981
SchI	GAGTC	5 cut(s)	98, 164, 440, 590, 710
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	412, 765
SfaNI	GCATC	3 cut(s)	256, 676, 973
Sfr274I	CTCGAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	795
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	3 cut(s)	86, 473, 536
SmoI	CTYRAG	3 cut(s)	86, 473, 536
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	162, 406
SspMI	CTAG	4 cut(s)	296, 314, 459, 930
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	87, 432, 714, 795, 894
TfiI	GAWTC	5 cut(s)	100, 530, 597, 779, 792
Tru1I	TTAA	3 cut(s)	417, 887, 944
Tru9I	TTAA	3 cut(s)	417, 887, 944
TscAI	CASTG	1 cut(s)	742
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	244, 427
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	6 cut(s)	53, 99, 105, 113, 738, 846
TspRI	CASTG	1 cut(s)	742
VspI	ATTAAT	1 cut(s)	944
XapI	RAATTY	4 cut(s)	133, 304, 511, 574
XbaI	TCTAGA	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	601
XspI	CTAG	4 cut(s)	296, 314, 459, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.