Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2686440 .. 2704213

Gene Structure 17774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGACTTTATCAGTATTTCATGCTTTCCTTATTATTGAAATCATGTGTTTTTCGATTCTTGTAGTGTCATGTGATCACATATCCTTGAAAGGAAACTCGCAGAGAAAATTTCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAAGGAGCTTTTCTGAACGATGGTAAAGGTCTCAACAACTGGGATGTCTTCACTCGCAAGCCTGGTACTATCCTGCATGGAACTAATGGAGACATTGCTGAAGACATTGGAGTCAACAGCTACTGCTTTTCTATATCATGGGCAAGAATTTTACCCAAGAACAGAGCTGGCATTGATCACTATAACAAGTTCATCGATGCTCTTCTGCTTAGAGGAATCCAGCCCTTTGTGACATTGAGTCACTACTACATACCTCAGGATCTTGAAGACAGATATGGATCTTGGCTAAGGATACACCCACCATCTCATCGCTCTCTCCCTTTTAGAAATTGTACTGTTGGAGATTCAGAAAGAGAGCATTTTATTGCAGCTCATAACATCATTCTATCCCATGCAGCTGCTGTGAATATATACCGAACAAGATATCAGAAAAAACAAGGAGGTGGCATTGGAAGAGTGATGAGTGCTGTATGGTATGAACCCATCAGCAACTCCTTAGAAGACAAATTAGCAGCTGAGAGAGCTCAGTCTTTCTTTATGAACTGGTTCTTAGACCCAATTATCCATGGAAGATACCCTGCAGAAATGCATGAGCTTCTAGGAGCTGATTTGCCTGTGTTTTCCAAGTTTGATCTGGAGATGCTGAAGAATGGATTAGACTACATCGGTATCAATCACGATACCAGTTTTTACTCAAAAGACTGTATGTTTTCTCCATGTGAACCAGGACCAGGAGCTGCAAGGGTAGAGGGGTATGCTTTGAGAACTGCACAAAAAGATGGAGTCTACATTGGAGAACCAACTACAGTTGATTGGCTATATGTGTATCCTCAAGGAATGGAGAAGATGGTAACATACATAAACGAGAGATACAATAATACACCAATGTTTATTACAGAAAATGGGTATGGTGAGAATTCCACAAATGAAGAACTGTTCCATGATGTCAATAGAGTGGAGTACATGAGAAGTTACTTACACGCGCTAGCAGATGCAATGAGGCTAACTGAGTTTATGAAAATATGGACAGAACTACAGGGAGCAGATGTAAGAGGGTACTTCATGTGGTCATTGCTTGACGATTTCGAGTGGACAAGTGGATATACGGTCAAGTTTGGACTTCATCATGTTGATTATGGCATTCTCAAGAGAACTCCAAGACTCTCTGCAACTTGGTACAGACAATTTATTGCTAATCACACCCTGCAGATTTTAAGTGCCCAGGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

459

Amino Acids

52.63

Weight (kDa)

6.05

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	35 - 144	2.3e-31	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	161 - 448	5.7e-62	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	930
AccII	CGCG	1 cut(s)	1127
AclWI	GGATC	2 cut(s)	411, 430
AcsI	RAATTY	3 cut(s)	107, 291, 1060
AcuI	CTGAAG	2 cut(s)	264, 809
AfaI	GTAC	5 cut(s)	211, 478, 1106, 1202, 1322
AfiI	CCNNNNNNNGG	1 cut(s)	875
AgsI	TTSAA	4 cut(s)	38, 88, 146, 410
AhdI	GACNNNNNGTC	1 cut(s)	381
AjnI	CCWGG	4 cut(s)	205, 868, 874, 1365
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	179, 228
AlwI	GGATC	2 cut(s)	411, 430
AlwNI	CAGNNNCTG	3 cut(s)	267, 545, 881
ApeKI	GCWGC	5 cut(s)	512, 539, 542, 656, 881
ApoI	RAATTY	3 cut(s)	107, 291, 1060
Asp700I	GAANNNNTTC	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	1129
AspS9I	GGNCC	1 cut(s)	872
AsuHPI	GGTGA	1 cut(s)	1067
AsuNHI	GCTAGC	1 cut(s)	1129
AvaII	GGWCC	1 cut(s)	872
AxyI	CCTNAGG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	1366
BaeI	ACNNNNGTAYC	2 cut(s)	796, 829
BanII	GRGCYC	1 cut(s)	670
BbsI	GAAGAC	4 cut(s)	184, 252, 417, 651
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	5 cut(s)	524, 529, 551, 668, 868
BccI	CCATC	5 cut(s)	158, 454, 635, 917, 985
BciT130I	CCWGG	4 cut(s)	207, 870, 876, 1367
BciVI	GTATCC	2 cut(s)	429, 981
BclI	TGATCA	2 cut(s)	73, 319
BcoDI	GTCTC	2 cut(s)	179, 228
BfaI	CTAG	2 cut(s)	743, 1130
BfmI	CTRYAG	4 cut(s)	723, 948, 1178, 1349
BfuI	GTATCC	2 cut(s)	429, 981
BisI	GCNGC	5 cut(s)	513, 540, 543, 657, 882
BlsI	GCNGC	5 cut(s)	514, 541, 544, 658, 883
Bme1390I	CCNGG	4 cut(s)	207, 870, 876, 1367
Bme18I	GGWCC	1 cut(s)	872
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	872
BmrFI	CCNGG	4 cut(s)	207, 870, 876, 1367
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	4 cut(s)	134, 331, 774, 1126
BmtI	GCTAGC	1 cut(s)	1133
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	4 cut(s)	184, 252, 417, 651
BpmI	CTGGAG	1 cut(s)	800
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	2 cut(s)	960, 1274
Bsa29I	ATCGAT	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	709, 1365
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse1I	ACTGG	3 cut(s)	188, 692, 828
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	3 cut(s)	237, 1146, 1214
Bse8I	GATNNNNATC	1 cut(s)	421
BseBI	CCWGG	4 cut(s)	207, 870, 876, 1367
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	709, 1365
BseGI	GGATG	2 cut(s)	125, 193
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMI	GCAATG	3 cut(s)	237, 1146, 1214
BseMII	CTCAG	4 cut(s)	413, 651, 683, 1143
BseNI	ACTGG	3 cut(s)	188, 692, 828
BseSI	GKGCMC	1 cut(s)	1366
BseXI	GCAGC	5 cut(s)	524, 529, 551, 668, 868
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	1127
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	670
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	2 cut(s)	179, 228
BsmI	GAATGC	1 cut(s)	1284
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	670, 1366
Bsp143I	GATC	5 cut(s)	73, 319, 403, 422, 775
Bsp19I	CCATGG	1 cut(s)	709
BspCNI	CTCAG	4 cut(s)	412, 652, 682, 1144
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	1127
BspMAI	CTGCAG	2 cut(s)	727, 1353
BspOI	GCTAGC	1 cut(s)	1133
BspPI	GGATC	2 cut(s)	411, 430
BspQI	GCTCTTC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	3 cut(s)	237, 1146, 1214
BsrI	ACTGG	3 cut(s)	188, 692, 828
BssECI	CCNNGG	2 cut(s)	709, 1365
BssMI	GATC	5 cut(s)	73, 319, 403, 422, 775
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	4 cut(s)	207, 870, 876, 1367
Bst4CI	ACNGT	5 cut(s)	481, 848, 952, 1080, 1252
Bst6I	CTCTTC	3 cut(s)	136, 351, 592
BstC8I	GCNNGC	3 cut(s)	203, 313, 1131
BstDEI	CTNAG	8 cut(s)	353, 399, 431, 640, 660, 669, 694, 1152
BstDSI	CCRYGG	1 cut(s)	709
BstF5I	GGATG	2 cut(s)	125, 193
BstFNI	CGCG	1 cut(s)	1127
BstHHI	GCGC	1 cut(s)	1129
BstKTI	GATC	5 cut(s)	76, 322, 406, 425, 778
BstMAI	GTCTC	2 cut(s)	179, 228
BstMBI	GATC	5 cut(s)	73, 319, 403, 422, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	4 cut(s)	207, 870, 876, 1367
BstSCI	CCNGG	4 cut(s)	205, 868, 874, 1365
BstSFI	CTRYAG	4 cut(s)	723, 948, 1178, 1349
BstSLI	GKGCMC	1 cut(s)	1366
BstUI	CGCG	1 cut(s)	1127
BstV1I	GCAGC	5 cut(s)	524, 529, 551, 668, 868
BstV2I	GAAGAC	4 cut(s)	184, 252, 417, 651
BstX2I	RGATCY	2 cut(s)	403, 422
BstYI	RGATCY	2 cut(s)	403, 422
Bsu15I	ATCGAT	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	399
BsuI	GTATCC	2 cut(s)	429, 981
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	709
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	125, 193
Cac8I	GCNNGC	3 cut(s)	203, 313, 1131
CaiI	CAGNNNCTG	3 cut(s)	267, 545, 881
CfoI	GCGC	1 cut(s)	1129
Cfr13I	GGNCC	1 cut(s)	872
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	5 cut(s)	210, 477, 1105, 1201, 1321
CviQI	GTAC	5 cut(s)	210, 477, 1105, 1201, 1321
DdeI	CTNAG	8 cut(s)	353, 399, 431, 640, 660, 669, 694, 1152
DpnI	GATC	5 cut(s)	75, 321, 405, 424, 777
DpnII	GATC	5 cut(s)	73, 319, 403, 422, 775
DrdI	GACNNNNNNGTC	1 cut(s)	254
DriI	GACNNNNNGTC	1 cut(s)	381
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	3 cut(s)	136, 351, 592
Eam1105I	GACNNNNNGTC	1 cut(s)	381
EarI	CTCTTC	3 cut(s)	136, 351, 592
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	872
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	264, 809
Eco81I	CCTNAGG	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	1060
EcoRII	CCWGG	4 cut(s)	205, 868, 874, 1365
EcoRV	GATATC	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	709
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	709
FbaI	TGATCA	2 cut(s)	73, 319
FblI	GTMKAC	1 cut(s)	930
Fnu4HI	GCNGC	5 cut(s)	513, 540, 543, 657, 882
FokI	GGATG	2 cut(s)	112, 200
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	5 cut(s)	513, 540, 543, 657, 882
FspBI	CTAG	2 cut(s)	743, 1130
GlaI	GCGC	1 cut(s)	1128
GluI	GCNGC	5 cut(s)	513, 540, 543, 657, 882
GsuI	CTGGAG	1 cut(s)	800
HhaI	GCGC	1 cut(s)	1129
Hin6I	GCGC	1 cut(s)	1127
HinP1I	GCGC	1 cut(s)	1127
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	7 cut(s)	55, 255, 360, 382, 488, 927, 1305
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	4 cut(s)	259, 866, 931, 1236
Hpy188I	TCNGA	3 cut(s)	159, 493, 573
Hpy188III	TCNNGA	5 cut(s)	401, 407, 779, 821, 1291
Hpy8I	GTNNAC	4 cut(s)	259, 866, 931, 1236
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	5 cut(s)	481, 848, 952, 1080, 1252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	8 cut(s)	353, 399, 431, 640, 660, 669, 694, 1152
HspAI	GCGC	1 cut(s)	1127
Ksp22I	TGATCA	2 cut(s)	73, 319
Kzo9I	GATC	5 cut(s)	73, 319, 403, 422, 775
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	4 cut(s)	149, 746, 878, 1184
Lsp1109I	GCAGC	5 cut(s)	524, 529, 551, 668, 868
LweI	GCATC	4 cut(s)	134, 331, 774, 1126
MaeI	CTAG	2 cut(s)	743, 1130
MaeIII	GTNAC	4 cut(s)	373, 383, 994, 1115
MalI	GATC	5 cut(s)	75, 321, 405, 424, 777
MboI	GATC	5 cut(s)	73, 319, 403, 422, 775
MflI	RGATCY	2 cut(s)	403, 422
MhlI	GDGCHC	2 cut(s)	670, 1366
MluCI	AATT	7 cut(s)	107, 291, 472, 650, 702, 1060, 1328
MlyI	GAGTC	4 cut(s)	264, 391, 936, 1299
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	8 cut(s)	139, 350, 408, 578, 886, 984, 1137, 1190
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	1 cut(s)	689
MseI	TTAA	1 cut(s)	1358
MspA1I	CMGCKG	2 cut(s)	542, 659
MspR9I	CCNGG	4 cut(s)	207, 870, 876, 1367
Mva1269I	GAATGC	1 cut(s)	1284
MvaI	CCWGG	4 cut(s)	207, 870, 876, 1367
MvnI	CGCG	1 cut(s)	1127
MwoI	GCNNNNNNNGC	1 cut(s)	665
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	5 cut(s)	73, 319, 403, 422, 775
NheI	GCTAGC	1 cut(s)	1129
NmuCI	GTSAC	2 cut(s)	373, 383
NsiI	ATGCAT	1 cut(s)	735
PciSI	GCTCTTC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	1284
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	3 cut(s)	55, 360, 488
PkrI	GCNGC	5 cut(s)	514, 541, 544, 658, 883
PleI	GAGTC	4 cut(s)	263, 390, 935, 1299
PpsI	GAGTC	4 cut(s)	263, 390, 935, 1299
Psp124BI	GAGCTC	1 cut(s)	670
Psp6I	CCWGG	4 cut(s)	205, 868, 874, 1365
PspGI	CCWGG	4 cut(s)	205, 868, 874, 1365
PspPI	GGNCC	1 cut(s)	872
PstI	CTGCAG	2 cut(s)	727, 1353
PstNI	CAGNNNCTG	3 cut(s)	267, 545, 881
PsuI	RGATCY	2 cut(s)	403, 422
PvuII	CAGCTG	2 cut(s)	542, 659
RsaI	GTAC	5 cut(s)	211, 478, 1106, 1202, 1322
RsaNI	GTAC	5 cut(s)	210, 477, 1105, 1201, 1321
SacI	GAGCTC	1 cut(s)	670
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	1358
SatI	GCNGC	5 cut(s)	513, 540, 543, 657, 882
Sau3AI	GATC	5 cut(s)	73, 319, 403, 422, 775
Sau96I	GGNCC	1 cut(s)	872
SchI	GAGTC	4 cut(s)	264, 391, 936, 1299
ScrFI	CCNGG	4 cut(s)	207, 870, 876, 1367
SduI	GDGCHC	2 cut(s)	670, 1366
SfaNI	GCATC	4 cut(s)	134, 331, 774, 1126
SfcI	CTRYAG	4 cut(s)	723, 948, 1178, 1349
SinI	GGWCC	1 cut(s)	872
SmlI	CTYRAG	2 cut(s)	975, 1289
SmoI	CTYRAG	2 cut(s)	975, 1289
Sse9I	AATT	7 cut(s)	107, 291, 472, 650, 702, 1060, 1328
SspI	AATATT	1 cut(s)	1373
SspMI	CTAG	2 cut(s)	743, 1130
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	4 cut(s)	205, 868, 874, 1365
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	5 cut(s)	481, 848, 952, 1080, 1252
TaqI	TCGA	3 cut(s)	53, 339, 1230
TasI	AATT	7 cut(s)	107, 291, 472, 650, 702, 1060, 1328
TatI	WGTACW	2 cut(s)	476, 1104
TfiI	GAWTC	3 cut(s)	55, 360, 488
Tru1I	TTAA	1 cut(s)	1358
Tru9I	TTAA	1 cut(s)	1358
TseFI	GTSAC	2 cut(s)	373, 383
TseI	GCWGC	5 cut(s)	512, 539, 542, 656, 881
Tsp45I	GTSAC	2 cut(s)	373, 383
TspDTI	ATGAA	8 cut(s)	8, 325, 636, 698, 1086, 1175, 1195, 1256
VpaK11BI	GGWCC	1 cut(s)	872
XapI	RAATTY	3 cut(s)	107, 291, 1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	930
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	2 cut(s)	743, 1130
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.