Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Forward (+)

39984851 .. 39986650

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1316400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAAAAGATGGTCACGTACGTAAAAGACAGATACAATAATACACCTATCTTCATCACAGAAAACGGGTTTGGTGAGGTGGAGAATCCGAATTCCAGCAATGAAGAATTACTGAATGATGTCAAGAGAGTGGAGTACCTGAGATCCTACTTACATGCACTTTCAGAAGGAATTAGAAAAGGAGCAGATGTAAGAGGGTACTTGGTGTGGTCGTTGCTGGACAACTTCGAGTGGACGAGTGGCTATACGGTCCGGTTTGGACTTCACCATGTTGATTACGCCACTCTCAAGAGGAATCAAAGACTGTCAGCAGCTTGGTACAAACAATTTGTATCTAATCATACGGTGCAAACACACCTACCCACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

124

Amino Acids

14.4

Weight (kDa)

6.97

Isoelectric Point (pI)

17.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	3 - 114	1.7e-37	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	4 cut(s)	20, 137, 200, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
AlwI	GGATC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	86, 257
AvaII	GGWCC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	4
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	2 cut(s)	18, 22
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse3DI	GCAATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	253
BsiWI	CGTACG	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	106
BssMI	GATC	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	250, 306, 346
BstBAI	YACGTR	2 cut(s)	18, 22
BstDEI	CTNAG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	250
CpoI	CGGWCCG	1 cut(s)	250
Csp6I	GTAC	4 cut(s)	19, 136, 199, 319
CspI	CGGWCCG	1 cut(s)	250
CviAII	CATG	2 cut(s)	155, 269
CviJI	RGCY	2 cut(s)	243, 314
CviKI_1	RGCY	2 cut(s)	243, 314
CviQI	GTAC	4 cut(s)	19, 136, 199, 319
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco105I	TACGTA	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	91
FaeI	CATG	2 cut(s)	158, 272
FaiI	YATR	4 cut(s)	156, 246, 270, 342
FatI	CATG	2 cut(s)	154, 268
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	2 cut(s)	158, 272
HinfI	GANTC	2 cut(s)	85, 295
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	2 cut(s)	86, 257
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	2 cut(s)	90, 166
Hpy188III	TCNNGA	2 cut(s)	124, 289
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	3 cut(s)	250, 306, 346
HpyCH4IV	ACGT	2 cut(s)	17, 21
HpyCH4V	TGCA	2 cut(s)	158, 349
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	2 cut(s)	17, 21
Hsp92II	CATG	2 cut(s)	158, 272
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	4 cut(s)	109, 152, 203, 266
Lsp1109I	GCAGC	1 cut(s)	323
MaeII	ACGT	2 cut(s)	17, 21
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	2 cut(s)	43, 116
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	4 cut(s)	91, 107, 171, 326
MnlI	CCTC	3 cut(s)	70, 188, 285
MspI	CCGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	158, 272
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	85, 295
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	313
Ppu21I	YACGTR	2 cut(s)	18, 22
PspLI	CGTACG	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	4 cut(s)	20, 137, 200, 320
RsaNI	GTAC	4 cut(s)	19, 136, 199, 319
Rsr2I	CGGWCCG	1 cut(s)	250
RsrII	CGGWCCG	1 cut(s)	250
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	250
SetI	ASST	7 cut(s)	20, 24, 49, 81, 141, 316, 360
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SnaBI	TACGTA	1 cut(s)	22
Sse9I	AATT	4 cut(s)	91, 107, 171, 326
TaaI	ACNGT	3 cut(s)	250, 306, 346
TaiI	ACGT	2 cut(s)	20, 24
TaqI	TCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	91, 107, 171, 326
TfiI	GAWTC	2 cut(s)	85, 295
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	43, 117
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.