Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2670698 .. 2673720

Gene Structure 3023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031172

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGGTTTTATCAGTAATTCATGGTTTCCTTGTTATTGAAATCATGTGTTTTTCGATTCTCGTAGTGTCATGTGATCACATATCCTTGAAAGGAAACTCGCCTAGCAACTTTCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAAGGAGCTTTTCTGAATGATGGTATAGGTCTCAACAACTGGGATATCTTCACTCACAATCCTGGTACTATCCTGGATGGAAGTAATGGAGACATTGCTGTTGATCAGTACCATCTCTATCAGGAAGACTTGGATCTCATGAATAACATTGGAGTCAACAGCTACCGTTTTTCTATATCATGGGCAAGAATTTTACCCATTTTTTGTTACTTGATCAAAAATCTCTACCATAACTATAAACCAGAAGGAAGATTTGGAAAAGTGAACAGAGCTGGCATTGATCACTATAACAAGTTCATTGACGCTCTGCTGCTTAGAGGAATCCAGCCCTTTGTGACATTGACTAGCTATGACATACCTCAGGAACTTGAAAACAGATATGGAGCTTGGCTAAGTCCCCTACTGCAGGAAGATTTTAGATATTATGCAAATATATGTTTCAAATTCTTTGGAGACAGAGTCAAGTACTGGTCCACTTTCAATGAGCCCAATGTTGTCGCCATTCGTGGATATATGTCAGGGATACACCCACCACCTCATTGCTCTCTCCCTTTTGGAAACTGTACTGTTGGAGAATCAAAAAGAGAGCCTTTCATTGCAGCTCATAACATAATTCTATCCCATGCAGCTGCTGTGAATATATACCGAACAAAATATCAGAAAAAAGGAGGCAGCATTGGAATAGTGATGAGTGCTGTATGGTATGAACCCAACAGCAACACTATAGAAGACAAATTAGCAGCTGAGAGAGCTCAGTCTTTCTTTATGAACTGGTTCTTAGACCCAGTTGTCCATGGAAGATACCCTGCAGAAATGCATGAGCTTCTAGGAGCTGATTTGCCTGTGTTTTCCAAGTTTGATCTGGAGATGCTGAAGAATGGATTAGACTTCATTGGTATAAATCACTACACCAGTTTTTACTCAAAGGACTATACTACAGTTGGTTGGCTATATGTGTATCCTCAAGGAATGGAGAAGATGGTAACATACATAAAAGAGAGATACAATAATACACCAATGTTTATTACAGATGGGTATGGTGAGAATTCCACAAATGAAGAACGGTTCCATGATGTCAAGCTCAGTAAAACAAAAAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

417

Amino Acids

47.71

Weight (kDa)

6.06

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	34 - 360	2.6e-99	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	935
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	4 cut(s)	336, 590, 1192, 1244
AcuI	CTGAAG	1 cut(s)	1040
AfaI	GTAC	4 cut(s)	214, 257, 614, 712
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	6 cut(s)	41, 91, 149, 518, 589, 628
AjnI	CCWGG	2 cut(s)	208, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	3 cut(s)	182, 231, 594
AlwI	GGATC	1 cut(s)	288
AlwNI	CAGNNNCTG	1 cut(s)	779
ApeKI	GCWGC	6 cut(s)	457, 746, 773, 776, 819, 887
ApoI	RAATTY	4 cut(s)	336, 590, 1192, 1244
Asp700I	GAANNNNTTC	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	618
AsuHPI	GGTGA	1 cut(s)	1199
AvaII	GGWCC	1 cut(s)	618
AxyI	CCTNAGG	1 cut(s)	507
BanII	GRGCYC	2 cut(s)	636, 901
BbsI	GAAGAC	2 cut(s)	279, 882
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	6 cut(s)	444, 758, 763, 785, 831, 899
BccI	CCATC	5 cut(s)	161, 218, 267, 1120, 1172
BciT130I	CCWGG	2 cut(s)	210, 221
BciVI	GTATCC	2 cut(s)	663, 1116
BclI	TGATCA	4 cut(s)	76, 250, 360, 427
BcoDI	GTCTC	3 cut(s)	182, 231, 594
BfaI	CTAG	3 cut(s)	105, 492, 974
BfmI	CTRYAG	4 cut(s)	551, 870, 954, 1083
BfuI	GTATCC	2 cut(s)	663, 1116
BisI	GCNGC	6 cut(s)	458, 747, 774, 777, 820, 888
BlsI	GCNGC	6 cut(s)	459, 748, 775, 778, 821, 889
BmcAI	AGTACT	1 cut(s)	614
Bme1390I	CCNGG	2 cut(s)	210, 221
Bme18I	GGWCC	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	1214
BmrFI	CCNGG	2 cut(s)	210, 221
BmrI	ACTGGG	2 cut(s)	196, 926
BmsI	GCATC	2 cut(s)	137, 1005
BmuI	ACTGGG	2 cut(s)	196, 926
BpiI	GAAGAC	2 cut(s)	279, 882
BpmI	CTGGAG	1 cut(s)	1031
BpuEI	CTTGAG	1 cut(s)	1095
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	940
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	5 cut(s)	191, 620, 923, 932, 1059
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	3 cut(s)	240, 685, 741
BseBI	CCWGG	2 cut(s)	210, 221
BseDI	CCNNGG	1 cut(s)	940
BseGI	GGATG	2 cut(s)	128, 229
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	3 cut(s)	240, 685, 741
BseMII	CTCAG	4 cut(s)	521, 882, 914, 1243
BseNI	ACTGG	5 cut(s)	191, 620, 923, 932, 1059
BseXI	GCAGC	6 cut(s)	444, 758, 763, 785, 831, 899
BsiHKAI	GWGCWC	1 cut(s)	901
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	3 cut(s)	182, 231, 594
BsmFI	GGGAC	1 cut(s)	528
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	636, 901
Bsp143I	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
Bsp19I	CCATGG	1 cut(s)	940
BspCNI	CTCAG	4 cut(s)	520, 883, 913, 1242
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	1214
BspMAI	CTGCAG	2 cut(s)	555, 958
BspPI	GGATC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	3 cut(s)	240, 685, 741
BsrI	ACTGG	5 cut(s)	191, 620, 923, 932, 1059
BssECI	CCNNGG	1 cut(s)	940
BssMI	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
BssT1I	CCWWGG	1 cut(s)	940
Bst2UI	CCWGG	2 cut(s)	210, 221
Bst4CI	ACNGT	5 cut(s)	314, 710, 715, 1087, 1212
Bst6I	CTCTTC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	7 cut(s)	461, 507, 539, 891, 900, 925, 1229
BstDSI	CCRYGG	1 cut(s)	940
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	128, 229
BstKTI	GATC	6 cut(s)	79, 253, 283, 363, 430, 1009
BstMAI	GTCTC	3 cut(s)	182, 231, 594
BstMBI	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
BstMWI	GCNNNNNNNGC	1 cut(s)	896
BstNI	CCWGG	2 cut(s)	210, 221
BstSCI	CCNGG	2 cut(s)	208, 219
BstSFI	CTRYAG	4 cut(s)	551, 870, 954, 1083
BstV1I	GCAGC	6 cut(s)	444, 758, 763, 785, 831, 899
BstV2I	GAAGAC	2 cut(s)	279, 882
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	507
BsuI	GTATCC	2 cut(s)	663, 1116
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	2 cut(s)	128, 229
Cac8I	GCNNGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	618
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	4 cut(s)	213, 256, 613, 711
CviAII	CATG	9 cut(s)	23, 46, 72, 286, 327, 770, 941, 965, 1217
CviQI	GTAC	4 cut(s)	213, 256, 613, 711
DdeI	CTNAG	7 cut(s)	461, 507, 539, 891, 900, 925, 1229
DpnI	GATC	6 cut(s)	78, 252, 282, 362, 429, 1008
DpnII	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
DrdI	GACNNNNNNGTC	1 cut(s)	935
DseDI	GACNNNNNNGTC	1 cut(s)	935
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	899
Eco130I	CCWWGG	1 cut(s)	940
Eco24I	GRGCYC	2 cut(s)	636, 901
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	618
Eco53kI	GAGCTC	1 cut(s)	899
Eco57I	CTGAAG	1 cut(s)	1040
Eco81I	CCTNAGG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	899
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	1192
EcoRII	CCWGG	2 cut(s)	208, 219
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	940
EcoT22I	ATGCAT	1 cut(s)	966
EcoT38I	GRGCYC	2 cut(s)	636, 901
ErhI	CCWWGG	1 cut(s)	940
FaeI	CATG	9 cut(s)	26, 49, 75, 289, 330, 773, 944, 968, 1220
FalI	AAGNNNNNCTT	2 cut(s)	721, 753
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	9 cut(s)	22, 45, 71, 285, 326, 769, 940, 964, 1216
FbaI	TGATCA	4 cut(s)	76, 250, 360, 427
Fnu4HI	GCNGC	6 cut(s)	458, 747, 774, 777, 820, 888
FokI	GGATG	2 cut(s)	115, 236
FriOI	GRGCYC	2 cut(s)	636, 901
Fsp4HI	GCNGC	6 cut(s)	458, 747, 774, 777, 820, 888
FspBI	CTAG	3 cut(s)	105, 492, 974
GluI	GCNGC	6 cut(s)	458, 747, 774, 777, 820, 888
GsuI	CTGGAG	1 cut(s)	1031
HgaI	GACGC	1 cut(s)	458
Hin1II	CATG	9 cut(s)	26, 49, 75, 289, 330, 773, 944, 968, 1220
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	58, 300, 468, 606, 722
HphI	GGTGA	1 cut(s)	1199
Hpy166II	GTNNAC	3 cut(s)	304, 412, 621
Hpy188I	TCNGA	3 cut(s)	162, 807, 1250
Hpy188III	TCNNGA	4 cut(s)	269, 286, 509, 1010
Hpy8I	GTNNAC	3 cut(s)	304, 412, 621
HpyAV	CCTTC	2 cut(s)	143, 386
HpyCH4III	ACNGT	5 cut(s)	314, 710, 715, 1087, 1212
HpyCH4V	TGCA	7 cut(s)	128, 553, 575, 746, 773, 956, 964
HpyF10VI	GCNNNNNNNGC	1 cut(s)	896
HpyF3I	CTNAG	7 cut(s)	461, 507, 539, 891, 900, 925, 1229
Hsp92II	CATG	9 cut(s)	26, 49, 75, 289, 330, 773, 944, 968, 1220
Ksp22I	TGATCA	4 cut(s)	76, 250, 360, 427
Kzo9I	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
LmnI	GCTCC	3 cut(s)	152, 530, 977
Lsp1109I	GCAGC	6 cut(s)	444, 758, 763, 785, 831, 899
LweI	GCATC	2 cut(s)	137, 1005
MaeI	CTAG	3 cut(s)	105, 492, 974
MaeIII	GTNAC	3 cut(s)	353, 481, 1129
MalI	GATC	6 cut(s)	78, 252, 282, 362, 429, 1008
MboI	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	636, 901
MluCI	AATT	7 cut(s)	18, 336, 590, 759, 881, 1192, 1244
MlyI	GAGTC	2 cut(s)	309, 615
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	6 cut(s)	142, 458, 516, 693, 809, 1119
Mph1103I	ATGCAT	1 cut(s)	966
MroXI	GAANNNNTTC	1 cut(s)	920
MspA1I	CMGCKG	2 cut(s)	776, 890
MspR9I	CCNGG	2 cut(s)	210, 221
MvaI	CCWGG	2 cut(s)	210, 221
MwoI	GCNNNNNNNGC	1 cut(s)	896
NcoI	CCATGG	1 cut(s)	940
NdeII	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
NlaIII	CATG	9 cut(s)	26, 49, 75, 289, 330, 773, 944, 968, 1220
NlaIV	GGNNCC	1 cut(s)	1214
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	966
PagI	TCATGA	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	920
PfeI	GAWTC	3 cut(s)	58, 468, 722
PflFI	GACNNNGTC	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	459, 748, 775, 778, 821, 889
PleI	GAGTC	2 cut(s)	308, 614
PpsI	GAGTC	2 cut(s)	308, 614
Psp124BI	GAGCTC	1 cut(s)	901
Psp6I	CCWGG	2 cut(s)	208, 219
PspGI	CCWGG	2 cut(s)	208, 219
PspN4I	GGNNCC	1 cut(s)	1214
PspPI	GGNCC	1 cut(s)	618
PstI	CTGCAG	2 cut(s)	555, 958
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	605
PvuII	CAGCTG	2 cut(s)	776, 890
RsaI	GTAC	4 cut(s)	214, 257, 614, 712
RsaNI	GTAC	4 cut(s)	213, 256, 613, 711
SacI	GAGCTC	1 cut(s)	901
SatI	GCNGC	6 cut(s)	458, 747, 774, 777, 820, 888
Sau3AI	GATC	6 cut(s)	76, 250, 280, 360, 427, 1006
Sau96I	GGNCC	1 cut(s)	618
ScaI	AGTACT	1 cut(s)	614
SchI	GAGTC	2 cut(s)	309, 615
ScrFI	CCNGG	2 cut(s)	210, 221
SduI	GDGCHC	2 cut(s)	636, 901
SfaNI	GCATC	2 cut(s)	137, 1005
SfcI	CTRYAG	4 cut(s)	551, 870, 954, 1083
SinI	GGWCC	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	1110
SmoI	CTYRAG	1 cut(s)	1110
Sse9I	AATT	7 cut(s)	18, 336, 590, 759, 881, 1192, 1244
SspMI	CTAG	3 cut(s)	105, 492, 974
SstI	GAGCTC	1 cut(s)	901
StyD4I	CCNGG	2 cut(s)	208, 219
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	5 cut(s)	314, 710, 715, 1087, 1212
TaqI	TCGA	1 cut(s)	56
TasI	AATT	7 cut(s)	18, 336, 590, 759, 881, 1192, 1244
TatI	WGTACW	2 cut(s)	612, 710
TfiI	GAWTC	3 cut(s)	58, 468, 722
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	6 cut(s)	457, 746, 773, 776, 819, 887
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	8 cut(s)	11, 302, 433, 730, 867, 929, 1027, 1218
Tth111I	GACNNNGTC	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	4 cut(s)	336, 590, 1192, 1244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	920
XspI	CTAG	3 cut(s)	105, 492, 974
ZrmI	AGTACT	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.