Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Forward (+)

93379198 .. 93380299

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGCACAGGAAAGGAAAAAGGATGCAGTTGGTTTGCGTTAGTGCTGCAGGGGCAGCAGACTTGCAGCGGTGCTGCAGGGGCAGCAGGGATGCATGCGCAGGGGCGCGTAGGGTATGGTGAGAATTCCACAAATGAAGAGCTGTTCCATGATGTCAAGAGAGTGGAGTACCTGAGTAGTTACTTACAGGCACTAGCAGATGCAATGAGAACTAAAGGAGCAGATGTAAGAGGGTACTTCGTGTGGTCATTGCTCGATGATTTCGAGTGGACAAGTGGATTTAGGGTCAAGTTTGGACTTCACCATGTTGATTATGGCACTCTCAAGAGAACTCCAAGACTCTCTGCAGCTTGGTACAGACAATTTATCACTAATCACACCCTGCAGATTTTAAGCGCCCAGGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

7.76

Isoelectric Point (pI)

16.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	40 - 126	2.6e-27	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	99
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	3 cut(s)	170, 236, 356
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	142, 350
AluI	AGCT	2 cut(s)	142, 350
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	6 cut(s)	46, 55, 66, 74, 83, 347
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	3 cut(s)	100, 108, 398
AsuHPI	GGTGA	2 cut(s)	131, 293
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	6 cut(s)	33, 61, 67, 78, 95, 359
BciT130I	CCWGG	1 cut(s)	401
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	4 cut(s)	47, 75, 345, 383
BfoI	RGCGCY	1 cut(s)	399
BisI	GCNGC	6 cut(s)	47, 56, 67, 75, 84, 348
BlsI	GCNGC	6 cut(s)	48, 57, 68, 76, 85, 349
Bme1390I	CCNGG	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	3 cut(s)	14, 81, 190
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse3DI	GCAATG	2 cut(s)	210, 248
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	29, 96
BseMI	GCAATG	2 cut(s)	210, 248
BseMII	CTCAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	6 cut(s)	33, 61, 67, 78, 95, 359
Bsh1236I	CGCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	108
BspMAI	CTGCAG	4 cut(s)	51, 79, 349, 387
BspQI	GCTCTTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	210, 248
BssECI	CCNNGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	29, 96
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	3 cut(s)	100, 108, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 55, 80, 83
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	4 cut(s)	47, 75, 345, 383
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	6 cut(s)	33, 61, 67, 78, 95, 359
BtsCI	GGATG	2 cut(s)	29, 96
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	3 cut(s)	100, 108, 398
Csp6I	GTAC	3 cut(s)	169, 235, 355
CviAII	CATG	3 cut(s)	95, 149, 305
CviJI	RGCY	2 cut(s)	142, 350
CviKI_1	RGCY	2 cut(s)	142, 350
CviQI	GTAC	3 cut(s)	169, 235, 355
DdeI	CTNAG	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	96
FaeI	CATG	3 cut(s)	98, 152, 308
FaiI	YATR	5 cut(s)	96, 117, 150, 306, 315
FatI	CATG	3 cut(s)	94, 148, 304
Fnu4HI	GCNGC	6 cut(s)	47, 56, 67, 75, 84, 348
FokI	GGATG	2 cut(s)	36, 103
Fsp4HI	GCNGC	6 cut(s)	47, 56, 67, 75, 84, 348
FspBI	CTAG	1 cut(s)	194
FspI	TGCGCA	1 cut(s)	99
GlaI	GCGC	3 cut(s)	99, 107, 397
GluI	GCNGC	6 cut(s)	47, 56, 67, 75, 84, 348
HaeII	RGCGCY	1 cut(s)	399
HhaI	GCGC	3 cut(s)	100, 108, 398
Hin1II	CATG	3 cut(s)	98, 152, 308
Hin6I	GCGC	3 cut(s)	98, 106, 396
HinP1I	GCGC	3 cut(s)	98, 106, 396
HinfI	GANTC	1 cut(s)	339
HphI	GGTGA	2 cut(s)	131, 293
Hpy166II	GTNNAC	2 cut(s)	6, 270
Hpy188III	TCNNGA	2 cut(s)	157, 325
Hpy8I	GTNNAC	2 cut(s)	6, 270
HpyCH4V	TGCA	9 cut(s)	6, 27, 49, 66, 77, 94, 203, 347, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 55, 80, 83
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	98, 152, 308
HspAI	GCGC	3 cut(s)	98, 106, 396
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	8 cut(s)	35, 63, 72, 86, 173, 185, 386, 395
Lsp1109I	GCAGC	6 cut(s)	33, 61, 67, 78, 95, 359
LweI	GCATC	3 cut(s)	14, 81, 190
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	179
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	124, 362
MlyI	GAGTC	1 cut(s)	333
MnlI	CCTC	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	96
MseI	TTAA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	4 cut(s)	52, 55, 80, 83
NlaIII	CATG	3 cut(s)	98, 152, 308
NsbI	TGCGCA	1 cut(s)	99
NsiI	ATGCAT	1 cut(s)	96
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	48, 57, 68, 76, 85, 349
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PstI	CTGCAG	4 cut(s)	51, 79, 349, 387
RsaI	GTAC	3 cut(s)	170, 236, 356
RsaNI	GTAC	3 cut(s)	169, 235, 355
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	6 cut(s)	47, 56, 67, 75, 84, 348
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	144, 174, 352
SfaNI	GCATC	3 cut(s)	14, 81, 190
SfcI	CTRYAG	4 cut(s)	47, 75, 345, 383
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	2 cut(s)	124, 362
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	399
TaqI	TCGA	2 cut(s)	255, 264
TasI	AATT	2 cut(s)	124, 362
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseI	GCWGC	6 cut(s)	46, 55, 66, 74, 83, 347
TspDTI	ATGAA	1 cut(s)	150
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.