Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2320081 .. 2320694

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCTGAAGAATGGATTAGACTACATCGGACCAGGAGCTGCAAGGATAGAGGGATATGCTTTGAGAACTGCACAACAAGATGGAGTCTACATTGGAGAACCAACTACAGTTGATTGGCTATATGTGTATCCTCAAGGAATGGAGAAGATGGTAACATACAAAAACGAGAGATACAATAATACACCAATGTTTATTACAGAAAATGGGTATGGTGAGAATTCCACAAATGAAGAACTGTTCCATGATGTCAAGAGAGTGGAGTACATGAGAAGTTACTTACAGGCGCTAGCAGATGCAATGAGTGGTTCACTTTGTGGTGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

108

Amino Acids

12.21

Weight (kDa)

4.64

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	31 - 101	2.6e-14	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	224
AsuNHI	GCTAGC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	74, 142
BciT130I	CCWGG	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	283
BmtI	GCTAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	54
BspOI	GCTAGC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	109, 237
BstC8I	GCNNGC	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	242, 265
CviJI	RGCY	3 cut(s)	38, 118, 324
CviKI_1	RGCY	3 cut(s)	38, 118, 324
CviQI	GTAC	1 cut(s)	262
DraIII	CACNNNGTG	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	245, 268
FaiI	YATR	7 cut(s)	57, 121, 123, 157, 210, 243, 266
FatI	CATG	2 cut(s)	241, 264
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	287
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	245, 268
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	1 cut(s)	84
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	88, 308
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	88, 308
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	109, 237
HpyCH4V	TGCA	3 cut(s)	41, 71, 296
Hsp92II	CATG	2 cut(s)	245, 268
HspAI	GCGC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	3 cut(s)	18, 45, 266
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	151, 272
MboII	GAAGA	3 cut(s)	19, 157, 242
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	43, 141
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	245, 268
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SatI	GCNGC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	109, 237
TasI	AATT	1 cut(s)	217
TatI	WGTACW	1 cut(s)	261
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.