Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013996.1

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Forward (+)

1025 .. 2608

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013996.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgatggtaaaggtctcaacaactgggatatcttcactcacaagcctggttagagtgcttgatcatgttttattgactcatcacttggatgcattttcatccaaattggatgctgaagaagttatatcttggcttgtcatcctggatggaactaatggagacattgctgttgatcagtaccatctttatcagcattcagtcgtcacatctctaaggaatctctactataactatgaaccagaaggaagatttggaaaagtgaacagagctgccattgatcactataacaagttcatcgatgctcttctgcttagagggtatggtgagaattccacaaatgaagaactgttccatgatgtcaagagagtggagtacatgagaagttacttacaggcgctagcagatgcaatcaggctaactgagtttatgaaaatatggacagaactaaaggagcagatgtacgagggtacttcgtgtggtcattgctcgacaatttcgagtggacaagtggatatacggtcgagtttggacttcatcatgtggattatggaattctcaagagaactccaagactctctaaggtacagacaatttattgctaatcacaccctgcagattctaagtgcccaggaatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

212

Amino Acids

24.55

Weight (kDa)

5.42

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	328, 551
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	5 cut(s)	179, 374, 461, 469, 584
AjnI	CCWGG	3 cut(s)	45, 141, 627
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	19, 153
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	328, 551
AspLEI	GCGC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	140, 189
BciT130I	CCWGG	3 cut(s)	47, 143, 629
BclI	TGATCA	3 cut(s)	61, 172, 277
BcoDI	GTCTC	2 cut(s)	19, 153
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	611
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	47, 143, 629
BmrFI	CCNGG	3 cut(s)	47, 143, 629
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	4 cut(s)	79, 100, 289, 394
BmtI	GCTAGC	1 cut(s)	401
BmuI	ACTGGG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	627
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	2 cut(s)	162, 481
BseBI	CCWGG	3 cut(s)	47, 143, 629
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	5 cut(s)	94, 98, 115, 138, 151
BseMI	GCAATG	2 cut(s)	162, 481
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	521
BsmAI	GTCTC	2 cut(s)	19, 153
BsmI	GAATGC	1 cut(s)	193
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	61, 172, 277
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	615
BspOI	GCTAGC	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	162, 481
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	3 cut(s)	61, 172, 277
Bst2UI	CCWGG	3 cut(s)	47, 143, 629
Bst4CI	ACNGT	2 cut(s)	348, 519
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	5 cut(s)	212, 311, 420, 578, 620
BstF5I	GGATG	5 cut(s)	94, 98, 115, 138, 151
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	3 cut(s)	64, 175, 280
BstMAI	GTCTC	2 cut(s)	19, 153
BstMBI	GATC	3 cut(s)	61, 172, 277
BstMCI	CGRYCG	1 cut(s)	521
BstNI	CCWGG	3 cut(s)	47, 143, 629
BstSCI	CCNGG	3 cut(s)	45, 141, 627
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	5 cut(s)	94, 98, 115, 138, 151
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	5 cut(s)	178, 373, 460, 468, 583
CviAII	CATG	4 cut(s)	65, 353, 376, 538
CviJI	RGCY	4 cut(s)	45, 133, 269, 415
CviKI_1	RGCY	4 cut(s)	45, 133, 269, 415
CviQI	GTAC	5 cut(s)	178, 373, 460, 468, 583
DdeI	CTNAG	5 cut(s)	212, 311, 420, 578, 620
DpnI	GATC	3 cut(s)	63, 174, 279
DpnII	GATC	3 cut(s)	61, 172, 277
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	135
EcoRI	GAATTC	2 cut(s)	328, 551
EcoRII	CCWGG	3 cut(s)	45, 141, 627
EcoRV	GATATC	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	94
FaeI	CATG	4 cut(s)	68, 356, 379, 541
FatI	CATG	4 cut(s)	64, 352, 375, 537
FbaI	TGATCA	3 cut(s)	61, 172, 277
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	5 cut(s)	85, 101, 122, 125, 158
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	398
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	4 cut(s)	68, 356, 379, 541
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	4 cut(s)	76, 217, 572, 616
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	262, 503
Hpy188III	TCNNGA	2 cut(s)	361, 558
Hpy8I	GTNNAC	2 cut(s)	262, 503
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	348, 519
HpyCH4V	TGCA	3 cut(s)	92, 407, 613
HpyF3I	CTNAG	5 cut(s)	212, 311, 420, 578, 620
Hsp92II	CATG	4 cut(s)	68, 356, 379, 541
HspAI	GCGC	1 cut(s)	395
Ksp22I	TGATCA	3 cut(s)	61, 172, 277
Kzo9I	GATC	3 cut(s)	61, 172, 277
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	4 cut(s)	79, 100, 289, 394
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	202, 383
MalI	GATC	3 cut(s)	63, 174, 279
MboI	GATC	3 cut(s)	61, 172, 277
MboII	GAAGA	5 cut(s)	24, 128, 258, 296, 353
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	5 cut(s)	104, 328, 492, 551, 590
MlyI	GAGTC	2 cut(s)	70, 566
MnlI	CCTC	2 cut(s)	308, 457
Mph1103I	ATGCAT	1 cut(s)	94
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	47, 143, 629
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	3 cut(s)	47, 143, 629
NdeII	GATC	3 cut(s)	61, 172, 277
NheI	GCTAGC	1 cut(s)	397
NlaIII	CATG	4 cut(s)	68, 356, 379, 541
NmuCI	GTSAC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	217, 616
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	70, 566
PpsI	GAGTC	2 cut(s)	70, 566
Psp6I	CCWGG	3 cut(s)	45, 141, 627
PspGI	CCWGG	3 cut(s)	45, 141, 627
PstI	CTGCAG	1 cut(s)	615
RsaI	GTAC	5 cut(s)	179, 374, 461, 469, 584
RsaNI	GTAC	5 cut(s)	178, 373, 460, 468, 583
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	3 cut(s)	61, 172, 277
SchI	GAGTC	2 cut(s)	70, 566
ScrFI	CCNGG	3 cut(s)	47, 143, 629
SduI	GDGCHC	1 cut(s)	628
SetI	ASST	3 cut(s)	15, 271, 584
SfaNI	GCATC	4 cut(s)	79, 100, 289, 394
SfcI	CTRYAG	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	5 cut(s)	104, 328, 492, 551, 590
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	45, 141, 627
TaaI	ACNGT	2 cut(s)	348, 519
TaqI	TCGA	4 cut(s)	297, 488, 497, 521
TasI	AATT	5 cut(s)	104, 328, 492, 551, 590
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	217, 616
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	6 cut(s)	87, 249, 283, 354, 443, 523
XapI	RAATTY	2 cut(s)	328, 551
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.