Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2278102 .. 2278995

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCATGAGCTTCTAGGAGCTGATTTGCCTGTGTCTTCCAAGTTTGATCTGGAGATGCTTGAGAATGGATTAGACTTCATCGGTATCAATCACCATACCAGTTTTTATGCAAAAGACTGTCTGTTTTCTCCATGTGAACCAGGACCAGGAGCTGCAAGGATAAAGGGGTATACTTTGAGAACTGAACAAAAAGATGGAGTCTACATTGGAGAACCAGGTGAGAATTCCACAAATGAAGAACTGTTTCATGATGTCAAGAGAGTGGAGTACCTGAGTAGTTACTTACAGGCACTAGCAGATGCAATGAGAACTAAAGGAGCAGATGTAAGAGAGTACTTCGTGTGGTCATTGCTTGATGATTTCGAGTGGACAAGTGGATTTATGGTCAAGTTTGGACTTCACCGTGTTGATTATGGCACTCTCAAGAGAACTCCAAGACTCTCTGCAGCTTGGTACAGACAATTTATCACTAATCACACCCTGCAGACGCCCAGGAATATTGATCAAGAAAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

172

Amino Acids

19.72

Weight (kDa)

5.49

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	64 - 159	3.5e-25	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	170, 201
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	3 cut(s)	269, 335, 455
AfiI	CCNNNNNNNGG	1 cut(s)	146
AjnI	CCWGG	4 cut(s)	139, 145, 214, 491
AluBI	AGCT	4 cut(s)	10, 20, 152, 449
AluI	AGCT	4 cut(s)	10, 20, 152, 449
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	152, 446
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	83, 230, 392
AvaII	GGWCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	139, 458
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	4 cut(s)	141, 147, 216, 493
BclI	TGATCA	1 cut(s)	502
BfaI	CTAG	2 cut(s)	14, 293
BfmI	CTRYAG	2 cut(s)	444, 482
BisI	GCNGC	2 cut(s)	153, 447
BlsI	GCNGC	2 cut(s)	154, 448
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	4 cut(s)	141, 147, 216, 493
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	4 cut(s)	141, 147, 216, 493
BmsI	GCATC	2 cut(s)	45, 289
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	80, 407
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	2 cut(s)	309, 347
BseBI	CCWGG	4 cut(s)	141, 147, 216, 493
BseDI	CCNNGG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	309, 347
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	139, 458
BslI	CCNNNNNNNGG	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	46, 502
BspCNI	CTCAG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	247
BspMAI	CTGCAG	2 cut(s)	448, 486
BsrDI	GCAATG	2 cut(s)	309, 347
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	2 cut(s)	46, 502
BssNAI	GTATAC	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	488
Bst1107I	GTATAC	1 cut(s)	171
Bst2UI	CCWGG	4 cut(s)	141, 147, 216, 493
Bst4CI	ACNGT	3 cut(s)	119, 243, 404
BstACI	GRCGYC	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	49, 505
BstMBI	GATC	2 cut(s)	46, 502
BstNI	CCWGG	4 cut(s)	141, 147, 216, 493
BstSCI	CCNGG	4 cut(s)	139, 145, 214, 491
BstSFI	CTRYAG	2 cut(s)	444, 482
BstV1I	GCAGC	2 cut(s)	139, 458
BstV2I	GAAGAC	1 cut(s)	27
BstZ17I	GTATAC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	496
CsiI	ACCWGGT	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	268, 334, 454
CviAII	CATG	3 cut(s)	5, 132, 248
CviJI	RGCY	4 cut(s)	10, 20, 152, 449
CviKI_1	RGCY	4 cut(s)	10, 20, 152, 449
CviQI	GTAC	3 cut(s)	268, 334, 454
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	2 cut(s)	48, 504
DpnII	GATC	2 cut(s)	46, 502
Eco47I	GGWCC	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	4 cut(s)	139, 145, 214, 491
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 135, 251
FaiI	YATR	8 cut(s)	6, 96, 108, 133, 171, 249, 383, 414
FatI	CATG	3 cut(s)	4, 131, 247
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	170, 201
Fnu4HI	GCNGC	2 cut(s)	153, 447
Fsp4HI	GCNGC	2 cut(s)	153, 447
FspBI	CTAG	2 cut(s)	14, 293
GluI	GCNGC	2 cut(s)	153, 447
GsuI	CTGGAG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	496
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	3 cut(s)	8, 135, 251
HinfI	GANTC	2 cut(s)	198, 438
HphI	GGTGA	3 cut(s)	83, 230, 392
Hpy166II	GTNNAC	4 cut(s)	137, 171, 202, 369
Hpy188III	TCNNGA	5 cut(s)	50, 248, 256, 424, 506
Hpy8I	GTNNAC	4 cut(s)	137, 171, 202, 369
HpyCH4III	ACNGT	3 cut(s)	119, 243, 404
HpyCH4V	TGCA	6 cut(s)	4, 110, 155, 302, 446, 484
HpyF3I	CTNAG	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	8, 135, 251
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	46, 502
LmnI	GCTCC	3 cut(s)	17, 149, 317
Lsp1109I	GCAGC	2 cut(s)	139, 458
LweI	GCATC	2 cut(s)	45, 289
MabI	ACCWGGT	1 cut(s)	214
MaeI	CTAG	2 cut(s)	14, 293
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	48, 504
MboI	GATC	2 cut(s)	46, 502
MboII	GAAGA	2 cut(s)	27, 248
MluCI	AATT	2 cut(s)	223, 461
MlyI	GAGTC	2 cut(s)	207, 432
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	243
MspR9I	CCNGG	4 cut(s)	141, 147, 216, 493
MvaI	CCWGG	4 cut(s)	141, 147, 216, 493
NdeII	GATC	2 cut(s)	46, 502
NlaIII	CATG	3 cut(s)	8, 135, 251
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	154, 448
PleI	GAGTC	2 cut(s)	206, 432
PpsI	GAGTC	2 cut(s)	206, 432
Psp6I	CCWGG	4 cut(s)	139, 145, 214, 491
PspGI	CCWGG	4 cut(s)	139, 145, 214, 491
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	2 cut(s)	448, 486
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	3 cut(s)	269, 335, 455
RsaNI	GTAC	3 cut(s)	268, 334, 454
SatI	GCNGC	2 cut(s)	153, 447
Sau3AI	GATC	2 cut(s)	46, 502
Sau96I	GGNCC	1 cut(s)	143
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	2 cut(s)	207, 432
ScrFI	CCNGG	4 cut(s)	141, 147, 216, 493
SetI	ASST	6 cut(s)	12, 22, 154, 220, 273, 451
SexAI	ACCWGGT	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	45, 289
SfcI	CTRYAG	2 cut(s)	444, 482
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	59, 422
SmoI	CTYRAG	2 cut(s)	59, 422
Sse9I	AATT	2 cut(s)	223, 461
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	14, 293
StyD4I	CCNGG	4 cut(s)	139, 145, 214, 491
TaaI	ACNGT	3 cut(s)	119, 243, 404
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	223, 461
TatI	WGTACW	1 cut(s)	333
TseI	GCWGC	2 cut(s)	152, 446
TspDTI	ATGAA	3 cut(s)	67, 236, 249
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmiI	GTMKAC	2 cut(s)	170, 201
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	2 cut(s)	14, 293
ZrmI	AGTACT	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.