Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2233947 .. 2234390

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG032000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTTTTCTCCATGTGAACCAGGACCAGGAGCTGCAAGGATAGAGGGGTATGCTTTGAGAACTGCACAAAAAGATGGAGTCTACATTGGAGAACCAGTAGGAATGGAGAAGATGGTAACATACATAAAAGTGAGATACAATAATACACCAATGTTTATTACAGATGGGTATGGTGAGAATTCCACAAATGAAGAACGGTTCCATGATGTCAAGAGAGTGGAGTACATGAGAAGTTACTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

81

Amino Acids

9.28

Weight (kDa)

5.76

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	25 - 79	3.9e-07	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	19, 25
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	68, 106, 158
BciT130I	CCWGG	2 cut(s)	21, 27
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	21, 27
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	2 cut(s)	21, 27
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	21, 27
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	21, 27
Bst4CI	ACNGT	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	240
BstNI	CCWGG	2 cut(s)	21, 27
BstSCI	CCNGG	2 cut(s)	19, 25
BstV1I	GCAGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	12, 203, 226
CviJI	RGCY	1 cut(s)	32
CviKI_1	RGCY	1 cut(s)	32
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	19, 25
FaeI	CATG	3 cut(s)	15, 206, 229
FaiI	YATR	7 cut(s)	13, 51, 121, 125, 171, 204, 227
FatI	CATG	3 cut(s)	11, 202, 225
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	15, 206, 229
HinfI	GANTC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	17, 82
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	17, 82
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	35, 65
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	15, 206, 229
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	5 cut(s)	6, 12, 33, 39, 108
Lsp1109I	GCAGC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	115, 233
MboII	GAAGA	2 cut(s)	121, 203
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	37
MslI	CAYNNNNRTG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	21, 27
MvaI	CCWGG	2 cut(s)	21, 27
NlaIII	CATG	3 cut(s)	15, 206, 229
NlaIV	GGNNCC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	19, 25
PspGI	CCWGG	2 cut(s)	19, 25
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	128
SatI	GCNGC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	21, 27
SetI	ASST	1 cut(s)	34
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	19, 25
TaaI	ACNGT	1 cut(s)	198
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	222
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.