Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Forward (+)

93348039 .. 93355768

Gene Structure 7730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGGCTGTATCAGCATTTCATGCTTTCCTTACTATTGAAATCATGTGTTTTTCGATTCTCATAGTGTCATGTAATCACATATCCTTGAAAGGAAACTCGCCGAGCAACTTTCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAAGGAGCTTTTCTGAATGATGGTAAAGGGCTCAACAACTGGGATGTCTTCACTCACAAGCCTGGTACTATCCTGGATGGAACTAATGGAGACATTGCTGTTGATCAGTACCATCTTTATCAGGAAGACTTGGATCTCATGAATAACATTGGAGTCAACAGCTACCGTTTTTCTATATCATGGGCAAGAATTTTACCCAAAGGAAGATTTGGAAAAGTGAACAGAGCTGGAATTGATCACTATAACAAGTTCATCGACGCTCTTACGCTTAGAGGAATCCAGCCCTTTGTGACATTGACCCACTACGACATACCTCGGGAACTTGAATACGGATATGGAGCTTGGCTAAGTCCCCTACTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

170

Amino Acids

19.12

Weight (kDa)

5.8

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	34 - 166	9.1e-56	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	336
AfaI	GTAC	2 cut(s)	214, 257
AgsI	TTSAA	4 cut(s)	41, 91, 149, 473
AjnI	CCWGG	2 cut(s)	208, 219
AluBI	AGCT	4 cut(s)	155, 309, 374, 488
AluI	AGCT	4 cut(s)	155, 309, 374, 488
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	462
ApoI	RAATTY	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	187, 279
BccI	CCATC	3 cut(s)	161, 218, 267
BciT130I	CCWGG	2 cut(s)	210, 221
BclI	TGATCA	2 cut(s)	250, 382
BcoDI	GTCTC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	210, 221
BmeT110I	CYCGRG	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	210, 221
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	2 cut(s)	187, 279
BsaJI	CCNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	210, 221
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	3 cut(s)	128, 196, 229
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	250, 280, 382
BspHI	TCATGA	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	3 cut(s)	250, 280, 382
Bst2UI	CCWGG	2 cut(s)	210, 221
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	416, 494
BstF5I	GGATG	3 cut(s)	128, 196, 229
BstKTI	GATC	3 cut(s)	253, 283, 385
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	3 cut(s)	250, 280, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 23
BstNI	CCWGG	2 cut(s)	210, 221
BstSCI	CCNGG	2 cut(s)	208, 219
BstSFI	CTRYAG	1 cut(s)	506
BstV2I	GAAGAC	2 cut(s)	187, 279
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	128, 196, 229
CciI	TCATGA	1 cut(s)	285
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	213, 256
CviAII	CATG	5 cut(s)	23, 46, 72, 286, 327
CviJI	RGCY	9 cut(s)	8, 155, 178, 208, 309, 374, 430, 488, 493
CviKI_1	RGCY	9 cut(s)	8, 155, 178, 208, 309, 374, 430, 488, 493
CviQI	GTAC	2 cut(s)	213, 256
DdeI	CTNAG	2 cut(s)	416, 494
DpnI	GATC	3 cut(s)	252, 282, 384
DpnII	GATC	3 cut(s)	250, 280, 382
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	208, 219
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	5 cut(s)	26, 49, 75, 289, 330
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	5 cut(s)	22, 45, 71, 285, 326
FbaI	TGATCA	2 cut(s)	250, 382
FokI	GGATG	3 cut(s)	115, 203, 236
FriOI	GRGCYC	1 cut(s)	180
HgaI	GACGC	1 cut(s)	413
Hin1II	CATG	5 cut(s)	26, 49, 75, 289, 330
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	58, 300, 423
Hpy166II	GTNNAC	2 cut(s)	304, 367
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	3 cut(s)	269, 286, 464
Hpy8I	GTNNAC	2 cut(s)	304, 367
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	2 cut(s)	128, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 23
HpyF3I	CTNAG	2 cut(s)	416, 494
Hsp92II	CATG	5 cut(s)	26, 49, 75, 289, 330
Ksp22I	TGATCA	2 cut(s)	250, 382
Kzo9I	GATC	3 cut(s)	250, 280, 382
LmnI	GCTCC	2 cut(s)	152, 485
LpnPI	CCDG	8 cut(s)	172, 195, 206, 222, 233, 254, 360, 440
LweI	GCATC	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	252, 282, 384
MboI	GATC	3 cut(s)	250, 280, 382
MboII	GAAGA	4 cut(s)	126, 187, 284, 363
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	336, 378
MlyI	GAGTC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	142, 413, 471
MspR9I	CCNGG	2 cut(s)	210, 221
MvaI	CCWGG	2 cut(s)	210, 221
MwoI	GCNNNNNNNGC	2 cut(s)	14, 23
NdeII	GATC	3 cut(s)	250, 280, 382
NlaIII	CATG	5 cut(s)	26, 49, 75, 289, 330
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	58, 423
PfoI	TCCNGGA	1 cut(s)	219
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	208, 219
PspGI	CCWGG	2 cut(s)	208, 219
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	214, 257
RsaNI	GTAC	2 cut(s)	213, 256
Sau3AI	GATC	3 cut(s)	250, 280, 382
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	210, 221
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	157, 311, 376, 463, 490
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	336, 378
StyD4I	CCNGG	2 cut(s)	208, 219
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	56, 402
TasI	AATT	2 cut(s)	336, 378
TfiI	GAWTC	2 cut(s)	58, 423
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	11, 302, 388
TspGWI	ACGGA	1 cut(s)	492
XapI	RAATTY	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.