pycom05g31180

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
31020595 .. 31024836
4242 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31180.1

Sequence Viewer

Length: 1560 bp
ATGGAGCATTTTTCAGCACTTCATGTTTTCCTTATTGTTGATATATGCTTTGCGATTCCCATGGTGTCTTGCAATCACATATTTATTTTGAAAGGAAACTCAGCCACATCCCCTTTCCCTAGTAACTTCCTCTTTGGAACTGCATCCTCTTCTTACCAGTTTGAGGGAGCTTTTCTGACCGATGGAAAAGGCCTAAGCAACTGGGACGTTTTTACTCATAAGCCTGGTCATATTTCGGATGGAACTAATGGAGATATCGCTGATGACCAGTATCATCTCTATTTGGAAGATTTGGATCTCATGAATTACATTGGAGTCAATACTTACCGGTTTTCCATATCATGGGCAAGAGTTTTACCTAAAGGAAGATTTGGGAAAGTGAATCGAGCTGGCATCAATCACTATAACAAGTTCATCGACGCTCTTCTGCGTAGAGGAATCCATCCCTTCGTGACGTTGACTCACTACGACATTCCACAGGAACTTGAAGACAGATATGGAGCTTGGCTAAGTCCCCAACTGCAGGAGGATTTCCTATATTATGCAAATACATGTTTCAAATTCTTTGGAGACCGAGTGAAGTACTGGGTGACATTCAATGAGCCGAATGTAGTCGTTATTCGGGGCTATAGGTCGGGAGTGTACCCGCCCACTCGCTGCTCTAGACCCTTTGGGAATTGTACTAGTGGGGATTCAGAGAGAGAGCCTTTTATTGCAGCTCATAACATCATTCTATCCCATGCAGCTGCCGTCCATCTATACAGAACCAAATATCAGAAAAACCAAGGAGGTAGCATTGGAATTGTTATGAATGCCTTATGGTATGAACCGATCAGCAACTCCTTAGAAGACAAATTAGCAGCTGAGAGGGCTATATCTTTCTATATGAACTGGTTCTTAGACCCGGTTCTACAAGGGAAATATCCTGCAGAAATGCGTGAGATTCTAGGAGCTGATTTGCCGGCATTTTCGAAATCTGATGCGGAGATACTGAAGAAGAGTGGATTGGACTTCATTGGCATCAATCACTATACGAGCTTTTACTCAAAAGATTGTATGTTCTCTGCATGTGAACCAGGACCAGGGACTTCAAGGACAGAGGGTTTCGCATTGCGAACTGCACAGAAAGACGGAGTCTTCATTGGAGAACCAACTGCGGTTGACTGGCTGTATGTCTACCCTCAAGGAATGGAAAAGATCGTAACATATGTAAAAGACAGATACAACAACACACCAATCTTCATCACAGAAAATGGGTTTGGTGAGGTGGAGAATCCGAATTCGTGCAATGAAGAATTACTGAATGATGTCAAGAGAGTAGAGTACATGAGGTCTTACTTAAATGCACTTGCAGAAGGAATCAGAAAAGGAGCAGATGTAAGAGGGTACGTGGTGTGGTCGTTGCTGGACAACTTCGAGTGGACGAGTGGCCTTACGGTTCGGTTTGGACTTCACTGTGTTGATTACGCCACTCTCAAGAGGACTCAAAGACTATCAGCTGCTTGGTACAAACAATTTGTATCTAATCATACGGTGCAAACACACCTACCCACAAACTGA

Protein Analysis

520

Amino Acids

59.01

Weight (kDa)

6.25

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 37 - 510 1.8e-154 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 342
AccI GTMKAC 1 cut(s) 1176
AciI CCGC 3 cut(s) 647, 983, 1157
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 560, 1279
AcuI CTGAAG 1 cut(s) 1013
AfaI GTAC 6 cut(s) 584, 644, 682, 1325, 1388, 1508
AfiI CCNNNNNNNGG 4 cut(s) 163, 342, 523, 1082
AflIII ACRYGT 1 cut(s) 551
AgeI ACCGGT 1 cut(s) 327
AgsI TTSAA 5 cut(s) 91, 488, 559, 598, 1092
AhlI ACTAGT 1 cut(s) 683
AjnI CCWGG 3 cut(s) 223, 1075, 1081
AjuI GAANNNNNNNTTGG 4 cut(s) 989, 1021, 1242, 1274
AluBI AGCT 9 cut(s) 170, 389, 503, 719, 746, 863, 953, 1038, 1499
AluI AGCT 9 cut(s) 170, 389, 503, 719, 746, 863, 953, 1038, 1499
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 1 cut(s) 303
AoxI GGCC 2 cut(s) 190, 1429
ApeKI GCWGC 6 cut(s) 657, 716, 743, 746, 860, 1499
ApoI RAATTY 2 cut(s) 560, 1279
AsiGI ACCGGT 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 893
AspS9I GGNCC 1 cut(s) 1079
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 2 cut(s) 601, 1274
AsuII TTCGAA 1 cut(s) 971
AvaII GGWCC 1 cut(s) 1079
BbsI GAAGAC 3 cut(s) 495, 855, 1129
BbvI GCAGC 6 cut(s) 644, 728, 733, 755, 872, 1486
BccI CCATC 4 cut(s) 176, 233, 450, 762
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 3 cut(s) 225, 1077, 1083
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 1 cut(s) 564
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 4 cut(s) 120, 663, 684, 947
BfmI CTRYAG 3 cut(s) 521, 628, 927
BisI GCNGC 6 cut(s) 658, 717, 744, 747, 861, 1500
BlsI GCNGC 6 cut(s) 659, 718, 745, 748, 862, 1501
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 225, 905, 1077, 1083
Bme18I GGWCC 1 cut(s) 1079
BmgT120I GGNCC 1 cut(s) 1079
BmrFI CCNGG 4 cut(s) 225, 905, 1077, 1083
BmrI ACTGGG 2 cut(s) 211, 595
BmsI GCATC 4 cut(s) 152, 402, 970, 1029
BmuI ACTGGG 2 cut(s) 211, 595
BpiI GAAGAC 3 cut(s) 495, 855, 1129
Bpu10I CCTNAGC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 971
BpuEI CTTGAG 2 cut(s) 1167, 1460
BpuMI CCSGG 1 cut(s) 905
BsaAI YACGTR 1 cut(s) 1390
BsaBI GATNNNNATC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 60, 784, 1082
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 4 cut(s) 561, 591, 1362, 1392
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 342, 523, 1082
Bse118I RCCGGY 2 cut(s) 327, 961
Bse1I ACTGG 6 cut(s) 157, 206, 268, 590, 896, 1169
Bse3DI GCAATG 2 cut(s) 1109, 1294
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 3 cut(s) 225, 1077, 1083
BseDI CCNNGG 3 cut(s) 60, 784, 1082
BseGI GGATG 4 cut(s) 107, 143, 244, 442
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 4 cut(s) 163, 342, 523, 1082
BseMI GCAATG 2 cut(s) 1109, 1294
BseMII CTCAG 2 cut(s) 114, 855
BseNI ACTGG 6 cut(s) 157, 206, 268, 590, 896, 1169
BseXI GCAGC 6 cut(s) 644, 728, 733, 755, 872, 1486
BsgI GTGCAG 1 cut(s) 1104
BshFI GGCC 2 cut(s) 192, 1431
BshTI ACCGGT 1 cut(s) 327
BsiSI CCGG 3 cut(s) 328, 905, 962
BslFI GGGAC 3 cut(s) 218, 498, 1099
BslI CCNNNNNNNGG 4 cut(s) 163, 342, 523, 1082
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 3 cut(s) 218, 498, 1099
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 2 cut(s) 192, 1431
Bso31I GGTCTC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 971
Bsp143I GATC 3 cut(s) 295, 831, 1197
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 3 cut(s) 647, 983, 1157
BspANI GGCC 2 cut(s) 192, 1431
BspCNI CTCAG 2 cut(s) 113, 856
BspHI TCATGA 1 cut(s) 300
BspMAI CTGCAG 2 cut(s) 525, 931
BspPI GGATC 1 cut(s) 303
BspQI GCTCTTC 1 cut(s) 429
BspT104I TTCGAA 1 cut(s) 971
BspTNI GGTCTC 1 cut(s) 564
BsrDI GCAATG 2 cut(s) 1109, 1294
BsrFI RCCGGY 2 cut(s) 327, 961
BsrI ACTGG 6 cut(s) 157, 206, 268, 590, 896, 1169
BssAI RCCGGY 2 cut(s) 327, 961
BssECI CCNNGG 3 cut(s) 60, 784, 1082
BssMI GATC 3 cut(s) 295, 831, 1197
BssT1I CCWWGG 2 cut(s) 60, 784
Bst2UI CCWGG 3 cut(s) 225, 1077, 1083
Bst4CI ACNGT 3 cut(s) 1438, 1457, 1534
Bst6I CTCTTC 3 cut(s) 154, 429, 992
BstBAI YACGTR 1 cut(s) 1390
BstBI TTCGAA 1 cut(s) 971
BstC8I GCNNGC 2 cut(s) 391, 963
BstDEI CTNAG 6 cut(s) 100, 194, 509, 844, 864, 898
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 4 cut(s) 107, 143, 244, 442
BstKTI GATC 3 cut(s) 298, 834, 1200
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 3 cut(s) 295, 831, 1197
BstMWI GCNNNNNNNGC 1 cut(s) 869
BstNI CCWGG 3 cut(s) 225, 1077, 1083
BstNSI RCATGY 2 cut(s) 555, 1071
BstSCI CCNGG 4 cut(s) 223, 903, 1075, 1081
BstSFI CTRYAG 3 cut(s) 521, 628, 927
BstV1I GCAGC 6 cut(s) 644, 728, 733, 755, 872, 1486
BstV2I GAAGAC 3 cut(s) 495, 855, 1129
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 2 cut(s) 192, 1431
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 4 cut(s) 107, 143, 244, 442
BtsIMutI CAGTG 1 cut(s) 1453
Cac8I GCNNGC 2 cut(s) 391, 963
CciI TCATGA 1 cut(s) 300
Cfr10I RCCGGY 2 cut(s) 327, 961
Cfr13I GGNCC 1 cut(s) 1079
CseI GACGC 1 cut(s) 428
Csp6I GTAC 6 cut(s) 583, 643, 681, 1324, 1387, 1507
CspAI ACCGGT 1 cut(s) 327
CviAII CATG 8 cut(s) 23, 61, 301, 342, 552, 740, 1068, 1327
CviQI GTAC 6 cut(s) 583, 643, 681, 1324, 1387, 1507
DdeI CTNAG 6 cut(s) 100, 194, 509, 844, 864, 898
DpnI GATC 3 cut(s) 297, 833, 1199
DpnII GATC 3 cut(s) 295, 831, 1197
Eam1104I CTCTTC 3 cut(s) 154, 429, 992
EarI CTCTTC 3 cut(s) 154, 429, 992
Eco130I CCWWGG 2 cut(s) 60, 784
Eco147I AGGCCT 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 564
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 1079
Eco57I CTGAAG 1 cut(s) 1013
EcoRI GAATTC 1 cut(s) 1279
EcoRII CCWGG 3 cut(s) 223, 1075, 1081
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 60, 784
ErhI CCWWGG 2 cut(s) 60, 784
FaeI CATG 8 cut(s) 26, 64, 304, 345, 555, 743, 1071, 1330
FaqI GGGAC 3 cut(s) 218, 498, 1099
FatI CATG 8 cut(s) 22, 60, 300, 341, 551, 739, 1067, 1326
FauI CCCGC 1 cut(s) 654
FauNDI CATATG 1 cut(s) 1207
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 6 cut(s) 658, 717, 744, 747, 861, 1500
FokI GGATG 4 cut(s) 94, 130, 251, 429
Fsp4HI GCNGC 6 cut(s) 658, 717, 744, 747, 861, 1500
FspBI CTAG 4 cut(s) 120, 663, 684, 947
GluI GCNGC 6 cut(s) 658, 717, 744, 747, 861, 1500
HaeIII GGCC 2 cut(s) 192, 1431
HapII CCGG 3 cut(s) 328, 905, 962
HgaI GACGC 1 cut(s) 428
Hin1II CATG 8 cut(s) 26, 64, 304, 345, 555, 743, 1071, 1330
HincII GTYRAC 2 cut(s) 459, 1162
HindII GTYRAC 2 cut(s) 459, 1162
HpaII CCGG 3 cut(s) 328, 905, 962
HphI GGTGA 2 cut(s) 601, 1274
Hpy166II GTNNAC 6 cut(s) 459, 643, 1073, 1162, 1177, 1422
Hpy188I TCNGA 7 cut(s) 177, 238, 697, 777, 979, 1278, 1364
Hpy188III TCNNGA 6 cut(s) 301, 451, 636, 663, 1312, 1477
Hpy8I GTNNAC 6 cut(s) 459, 643, 1073, 1162, 1177, 1422
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 2 cut(s) 457, 1349
HpyCH4III ACNGT 3 cut(s) 1438, 1457, 1534
HpyCH4IV ACGT 3 cut(s) 207, 455, 1389
HpyF10VI GCNNNNNNNGC 1 cut(s) 869
HpyF3I CTNAG 6 cut(s) 100, 194, 509, 844, 864, 898
HpySE526I ACGT 3 cut(s) 207, 455, 1389
Hsp92II CATG 8 cut(s) 26, 64, 304, 345, 555, 743, 1071, 1330
KroI GCCGGC 1 cut(s) 961
KroNI GCCGGC 1 cut(s) 963
Kzo9I GATC 3 cut(s) 295, 831, 1197
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 5 cut(s) 4, 167, 500, 950, 1370
Lsp1109I GCAGC 6 cut(s) 644, 728, 733, 755, 872, 1486
LweI GCATC 4 cut(s) 152, 402, 970, 1029
MaeI CTAG 4 cut(s) 120, 663, 684, 947
MaeII ACGT 3 cut(s) 207, 455, 1389
MaeIII GTNAC 4 cut(s) 122, 451, 589, 1201
MalI GATC 3 cut(s) 297, 833, 1199
MboI GATC 3 cut(s) 295, 831, 1197
MflI RGATCY 1 cut(s) 295
MluCI AATT 8 cut(s) 304, 560, 676, 801, 854, 1279, 1295, 1514
MlyI GAGTC 4 cut(s) 324, 454, 1143, 1477
MroNI GCCGGC 1 cut(s) 961
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 1 cut(s) 1340
MspA1I CMGCKG 3 cut(s) 746, 863, 1499
MspI CCGG 3 cut(s) 328, 905, 962
MspR9I CCNGG 4 cut(s) 225, 905, 1077, 1083
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 3 cut(s) 225, 1077, 1083
MwoI GCNNNNNNNGC 1 cut(s) 869
NaeI GCCGGC 1 cut(s) 963
NciI CCSGG 1 cut(s) 905
NcoI CCATGG 1 cut(s) 60
NdeI CATATG 1 cut(s) 1207
NdeII GATC 3 cut(s) 295, 831, 1197
NgoMIV GCCGGC 1 cut(s) 961
NlaIII CATG 8 cut(s) 26, 64, 304, 345, 555, 743, 1071, 1330
NmuCI GTSAC 2 cut(s) 451, 589
NspI RCATGY 2 cut(s) 555, 1071
NspV TTCGAA 1 cut(s) 971
PagI TCATGA 1 cut(s) 300
PceI AGGCCT 1 cut(s) 192
PciI ACATGT 1 cut(s) 551
PciSI GCTCTTC 1 cut(s) 429
PctI GAATGC 1 cut(s) 817
PdiI GCCGGC 1 cut(s) 963
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 7 cut(s) 55, 382, 438, 692, 943, 1273, 1359
PflFI GACNNNGTC 1 cut(s) 1133
PflMI CCANNNNNTGG 1 cut(s) 342
PinAI ACCGGT 1 cut(s) 327
PkrI GCNGC 6 cut(s) 659, 718, 745, 748, 862, 1501
PleI GAGTC 4 cut(s) 323, 454, 1142, 1477
PpsI GAGTC 4 cut(s) 323, 454, 1142, 1477
Ppu21I YACGTR 1 cut(s) 1390
PscI ACATGT 1 cut(s) 551
Psp6I CCWGG 3 cut(s) 223, 1075, 1081
PspGI CCWGG 3 cut(s) 223, 1075, 1081
PspPI GGNCC 1 cut(s) 1079
PstI CTGCAG 2 cut(s) 525, 931
PsuI RGATCY 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 1133
PvuII CAGCTG 3 cut(s) 746, 863, 1499
RsaI GTAC 6 cut(s) 584, 644, 682, 1325, 1388, 1508
RsaNI GTAC 6 cut(s) 583, 643, 681, 1324, 1387, 1507
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 1340
SatI GCNGC 6 cut(s) 658, 717, 744, 747, 861, 1500
Sau3AI GATC 3 cut(s) 295, 831, 1197
Sau96I GGNCC 1 cut(s) 1079
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 4 cut(s) 324, 454, 1143, 1477
ScrFI CCNGG 4 cut(s) 225, 905, 1077, 1083
SfaNI GCATC 4 cut(s) 152, 402, 970, 1029
SfcI CTRYAG 3 cut(s) 521, 628, 927
SfuI TTCGAA 1 cut(s) 971
SinI GGWCC 1 cut(s) 1079
SmlI CTYRAG 2 cut(s) 1182, 1475
SmoI CTYRAG 2 cut(s) 1182, 1475
SpeI ACTAGT 1 cut(s) 683
Sse9I AATT 8 cut(s) 304, 560, 676, 801, 854, 1279, 1295, 1514
SseBI AGGCCT 1 cut(s) 192
SsiI CCGC 3 cut(s) 647, 983, 1157
SspMI CTAG 4 cut(s) 120, 663, 684, 947
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 4 cut(s) 223, 903, 1075, 1081
StyI CCWWGG 2 cut(s) 60, 784
TaaI ACNGT 3 cut(s) 1438, 1457, 1534
TaiI ACGT 3 cut(s) 210, 458, 1392
TaqI TCGA 4 cut(s) 385, 417, 971, 1416
TaqII GACCGA 2 cut(s) 194, 588
TasI AATT 8 cut(s) 304, 560, 676, 801, 854, 1279, 1295, 1514
TatI WGTACW 3 cut(s) 582, 680, 1323
TfiI GAWTC 7 cut(s) 55, 382, 438, 692, 943, 1273, 1359
Tru1I TTAA 1 cut(s) 1340
Tru9I TTAA 1 cut(s) 1340
TscAI CASTG 1 cut(s) 1460
TseFI GTSAC 2 cut(s) 451, 589
TseI GCWGC 6 cut(s) 657, 716, 743, 746, 860, 1499
Tsp45I GTSAC 2 cut(s) 451, 589
TspGWI ACGGA 1 cut(s) 1146
TspRI CASTG 1 cut(s) 1460
Tth111I GACNNNGTC 1 cut(s) 1133
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 1079
XapI RAATTY 2 cut(s) 560, 1279
XbaI TCTAGA 1 cut(s) 662
XceI RCATGY 2 cut(s) 555, 1071
XmiI GTMKAC 1 cut(s) 1176
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 4 cut(s) 120, 663, 684, 947
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.