Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2286639 .. 2287972

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG033800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCAGGGATAAACCCACCATCTCATTGCTCTCTCCCTTTTAGAAATTGTACTGTTGGAGATTCAGAAAGAGAGCATTTTATTGCAGCTCAGAATATCATTCTATCCCATGCAGCTGCTGTGAATATATACCGAACAAGATATCAGAAAAAACAAGGAGGTAGCATTGGAATAGTGATGAGTGCTGTATGGTATGAACCCATCAGCAACTCCTTAGAAGACAAATTAGCAGCTGAGAGAGCTCAGTCTTTCTTTATGAACTGGTTCTTATACCCAATTATCCATGGAAGATACCCTGCAGAAATGCATGAGCTTCTAAGAGCAGATTTGCCTACTACATCGGTATCAATCACTATACCAGTTTTTACTCAAAAGACTGTATGTTTTCTCCATGTGAAGCAGGACCCTGCAAGGATAGAGGGGTATGCTTTGAGAACTGCACAAAAAGATGGAGTTGGAGAACCAACTACAGTTGATTGGCTATATGTGTATCCTCAAGGAATGGTGAAGATAGTAACATACATAAACGAGAGATACAATAATACACCAATGTTTATTACAGAAAATGGGTTTGGTGAGAATTCCACAAATGAAGAACTGTTCCATGATGTCAAGAGAGTGGAGTACATGAGAAGTTACTTACAGGCGCTAGCAGATGCAATGAGAACTAAAGGAGCAGATGTACGAGGGTACTTCGTGTGGTCATTGCTCGACGATTTCGAGTGGACAAGTGGATATACGGTCGAGTTTGGACTTCATCATGTTGATTATGGAATTCTCAAGAGAACTCCAAGACTCTCTGCAACTTGGTACAGACAATTTATTGCTAATCACACCCTGCAGATTCTAAGTGCCCAGGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

288

Amino Acids

33.09

Weight (kDa)

6.36

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	19 - 278	1.4e-56	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	580, 774
AfaI	GTAC	5 cut(s)	52, 626, 684, 692, 812
AjnI	CCWGG	1 cut(s)	855
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	5 cut(s)	89, 116, 233, 242, 313
AluI	AGCT	5 cut(s)	89, 116, 233, 242, 313
Alw21I	GWGCWC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	119
ApeKI	GCWGC	4 cut(s)	86, 113, 116, 230
ApoI	RAATTY	2 cut(s)	580, 774
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	517, 587
AsuNHI	GCTAGC	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	856
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	4 cut(s)	98, 103, 125, 242
BccI	CCATC	3 cut(s)	28, 209, 443
BciT130I	CCWGG	1 cut(s)	857
BciVI	GTATCC	1 cut(s)	501
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	3 cut(s)	297, 468, 839
BfoI	RGCGCY	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	4 cut(s)	87, 114, 117, 231
BlsI	GCNGC	4 cut(s)	88, 115, 118, 232
Bme1390I	CCNGG	1 cut(s)	857
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	857
BmsI	GCATC	1 cut(s)	646
BmtI	GCTAGC	1 cut(s)	653
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	480, 764
BsaJI	CCNNGG	2 cut(s)	283, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bse1I	ACTGG	2 cut(s)	266, 359
Bse3DI	GCAATG	3 cut(s)	25, 666, 704
BseBI	CCWGG	1 cut(s)	857
BseDI	CCNNGG	2 cut(s)	283, 855
BseMI	GCAATG	3 cut(s)	25, 666, 704
BseMII	CTCAG	3 cut(s)	104, 225, 257
BseNI	ACTGG	2 cut(s)	266, 359
BseSI	GKGCMC	1 cut(s)	856
BseXI	GCAGC	4 cut(s)	98, 103, 125, 242
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	744
BsiEI	CGRYCG	1 cut(s)	744
BsiHKAI	GWGCWC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	244, 856
Bsp19I	CCATGG	1 cut(s)	283
BspCNI	CTCAG	3 cut(s)	103, 226, 256
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	2 cut(s)	301, 843
BspOI	GCTAGC	1 cut(s)	653
BsrDI	GCAATG	3 cut(s)	25, 666, 704
BsrI	ACTGG	2 cut(s)	266, 359
BssECI	CCNNGG	2 cut(s)	283, 855
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	5 cut(s)	55, 379, 472, 600, 742
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	6 cut(s)	90, 214, 234, 243, 317, 848
BstDSI	CCRYGG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstMCI	CGRYCG	1 cut(s)	744
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	855
BstSFI	CTRYAG	3 cut(s)	297, 468, 839
BstSLI	GKGCMC	1 cut(s)	856
BstV1I	GCAGC	4 cut(s)	98, 103, 125, 242
BstV2I	GAAGAC	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	651
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	403
Csp6I	GTAC	5 cut(s)	51, 625, 683, 691, 811
CviAII	CATG	7 cut(s)	110, 284, 308, 392, 605, 628, 761
CviJI	RGCY	6 cut(s)	89, 116, 233, 242, 313, 481
CviKI_1	RGCY	6 cut(s)	89, 116, 233, 242, 313, 481
CviQI	GTAC	5 cut(s)	51, 625, 683, 691, 811
DdeI	CTNAG	6 cut(s)	90, 214, 234, 243, 317, 848
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	244
Eco32I	GATATC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRI	GAATTC	2 cut(s)	580, 774
EcoRII	CCWGG	1 cut(s)	855
EcoRV	GATATC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	7 cut(s)	113, 287, 311, 395, 608, 631, 764
FatI	CATG	7 cut(s)	109, 283, 307, 391, 604, 627, 760
Fnu4HI	GCNGC	4 cut(s)	87, 114, 117, 231
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	4 cut(s)	87, 114, 117, 231
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	4 cut(s)	87, 114, 117, 231
HaeII	RGCGCY	1 cut(s)	650
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	7 cut(s)	113, 287, 311, 395, 608, 631, 764
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HinfI	GANTC	3 cut(s)	62, 795, 844
HphI	GGTGA	2 cut(s)	517, 587
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	3 cut(s)	67, 93, 147
Hpy188III	TCNNGA	2 cut(s)	613, 781
Hpy8I	GTNNAC	1 cut(s)	726
Hpy99I	CGWCG	1 cut(s)	716
HpyCH4III	ACNGT	5 cut(s)	55, 379, 472, 600, 742
HpyCH4V	TGCA	9 cut(s)	86, 113, 299, 307, 410, 440, 659, 803, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	6 cut(s)	90, 214, 234, 243, 317, 848
Hsp92II	CATG	7 cut(s)	113, 287, 311, 395, 608, 631, 764
HspAI	GCGC	1 cut(s)	647
LmnI	GCTCC	1 cut(s)	674
LpnPI	CCDG	8 cut(s)	247, 309, 372, 386, 420, 629, 842, 851
Lsp1109I	GCAGC	4 cut(s)	98, 103, 125, 242
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	2 cut(s)	514, 635
MboII	GAAGA	4 cut(s)	230, 300, 520, 605
MhlI	GDGCHC	2 cut(s)	244, 856
MluCI	AATT	6 cut(s)	46, 224, 276, 580, 774, 818
MlyI	GAGTC	1 cut(s)	789
MmeI	TCCRAC	2 cut(s)	37, 436
MnlI	CCTC	4 cut(s)	152, 412, 504, 680
Mph1103I	ATGCAT	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	116, 233
MspR9I	CCNGG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	283
NheI	GCTAGC	1 cut(s)	649
NlaIII	CATG	7 cut(s)	113, 287, 311, 395, 608, 631, 764
NlaIV	GGNNCC	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	62, 844
PkrI	GCNGC	4 cut(s)	88, 115, 118, 232
PleI	GAGTC	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	789
PpuMI	RGGWCCY	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
PstI	CTGCAG	2 cut(s)	301, 843
PstNI	CAGNNNCTG	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	116, 233
RsaI	GTAC	5 cut(s)	52, 626, 684, 692, 812
RsaNI	GTAC	5 cut(s)	51, 625, 683, 691, 811
SacI	GAGCTC	1 cut(s)	244
SatI	GCNGC	4 cut(s)	87, 114, 117, 231
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	789
ScrFI	CCNGG	1 cut(s)	857
SduI	GDGCHC	2 cut(s)	244, 856
SetI	ASST	6 cut(s)	91, 118, 163, 235, 244, 315
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	3 cut(s)	297, 468, 839
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	495, 779
SmoI	CTYRAG	2 cut(s)	495, 779
Sse9I	AATT	6 cut(s)	46, 224, 276, 580, 774, 818
SspI	AATATT	1 cut(s)	863
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	855
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	5 cut(s)	55, 379, 472, 600, 742
TaqI	TCGA	3 cut(s)	711, 720, 744
TasI	AATT	6 cut(s)	46, 224, 276, 580, 774, 818
TatI	WGTACW	2 cut(s)	50, 624
TfiI	GAWTC	2 cut(s)	62, 844
TseI	GCWGC	4 cut(s)	86, 113, 116, 230
TspDTI	ATGAA	4 cut(s)	210, 272, 606, 746
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	580, 774
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.