MD10G1316200.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
39971549 .. 39977750
6202 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1316200.v1.1.491

Sequence Viewer

Length: 1569 bp
ATGGGGAATTTCTCAGTACTTGTTCAGGCTGTCCTAACTACGGTTCAGATTTTGTGCTTTTCAATTCTTAAAGCGTCTTGTAACTCTCCCATATCTTTGGAAGGAAACGCAGCTTCGTCCTCTTTCCCAAGCGACTTCCTTTTTGGAACTGCTTCCTCTTCTTACCAGTATGAGGGAGCTTATCTGAATGATGGTAAAGCACTCAACAACTGGGATGTTTTCACTCACGAGCCCGATCGTATCTCGGATGGAACTAATGGAGATATTGCTGTTGATCAGTACCATCTTTATATGGAAGATTTGGATCTCATGAACTACCTTGGAGTCAATAGTTACCGGTTTTCTATATCTTGGGCAAGAGTTTTACCCAAAGGAAGATTTGGGAGAGTGAATCGCGCCGGCATTGCTCACTATAACAAGTTCATCGACGAGCTTCTGCTTAGAGGAATCCAGCCGTATGTGACGTTGACTCACTACGACATTCCACAGGAACTCGAAGACAGATATGGAGCTTGGCTAAGTCCCCAAGTGCAGGCGGATTTCAAACATTACGCAAATACATGTTTCAAATTCTTTGGAGACCGGGTGAAGTACTGGGCGACATTCAATGAGCCCAATGTAGCAGTTCCAAATGGTTACAGGTTAGGGACATACCCGCCAGCTCGCTGCTCTATCCCATTTGGGAATTGTACTAGTGGGGATTCAGAGAGGGAGCCTTTCATTGCAGCTCATAATATCATCCTATCCCATGCAGCTGCTGTGAATGTATACAGAACCAAATATCAGAAAATACAAGGAGGTAGCATTGGAATTGTCATGAATGCTCCATGGTTTGAACCCATCAGCAACTCCTTAGAAGACAAATTAGCAGCTGAGAGGGCTATATCTTTCTACATGAACTGGTTCTTAGACCCGATTGTACTCGGGAGATATCCTGCAGAAATGCAAGAGCTTCTAGGAGCTGATTTGCCAGCATTTTCAAAATCTGATGTGGAGATGCTGAAGAAGACTGGATTAGACTTCATTGGCCTCAATCATTATACCAGTTGTTACTCAAAAGACTGTATGTTTTCGGTATGTGAATCAGGAACAGGAGCTTCAAGGACAGAGGGTTACGCTTTGAGAACTTTCGAAAAAGATGGAGTCTTCATTGGAGAACCAACTACGATTGATTGGCTATATGTCTATCCTCAAGGAATGGAGAAGATCGTAACGTACGTAAAAGAAAGATACAATAACACACCAATGTTCATCACAGAAAATGGGTTTGGTGAGATAGAGAATTCAAATTCAAGTAGTGCAGAATTACTGCACGATGTCAAGAGATTGGAGTACATGGGATCCTATTTACAGGCACTTGCAAAAGCAATGAGAAAAGGAGCAGATGTGAGAGGTTACTTGGTGTGGTCGTTGCTGGACAATTTCGAGTGGACGAGTGGATATACTATTCGGTTTGGACTTTACCGTGTTGATTATACCACTCTCAAGAGAACTCAAAGACTATCAGCGGCTTGGTACAAACAATTCATTTCGAATCATACGGTGCAGGCTTCAAGTACCTCATCATGA

Protein Analysis

523

Amino Acids

58.96

Weight (kDa)

5.76

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 40 - 513 1.8e-152 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 768
AccII CGCG 1 cut(s) 396
AciI CCGC 3 cut(s) 536, 656, 1508
AclWI GGATC 3 cut(s) 312, 1335, 1348
AcsI RAATTY 4 cut(s) 7, 569, 1282, 1288
AcuI CTGAAG 1 cut(s) 1022
AfaI GTAC 9 cut(s) 18, 281, 593, 691, 921, 1217, 1334, 1517, 1558
AfiI CCNNNNNNNGG 3 cut(s) 40, 172, 532
AflIII ACRYGT 1 cut(s) 560
AgeI ACCGGT 1 cut(s) 336
AhlI ACTAGT 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 3 cut(s) 312, 1335, 1348
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 1 cut(s) 923
AoxI GGCC 1 cut(s) 1027
ApeKI GCWGC 6 cut(s) 110, 666, 725, 752, 755, 869
ApoI RAATTY 4 cut(s) 7, 569, 1282, 1288
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsiGI ACCGGT 1 cut(s) 336
Asp700I GAANNNNTTC 2 cut(s) 151, 902
AspLEI GCGC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 584
AsuHPI GGTGA 2 cut(s) 598, 1283
AsuII TTCGAA 2 cut(s) 1131, 1532
AvaI CYCGRG 1 cut(s) 923
BamHI GGATCC 1 cut(s) 1340
BanII GRGCYC 2 cut(s) 234, 615
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 4 cut(s) 504, 864, 1013, 1138
BbvI GCAGC 6 cut(s) 122, 653, 737, 742, 764, 881
BccI CCATC 5 cut(s) 185, 242, 291, 848, 1133
BceAI ACGGC 1 cut(s) 439
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 573
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 2 cut(s) 693, 956
BfmI CTRYAG 1 cut(s) 936
BisI GCNGC 7 cut(s) 111, 667, 726, 753, 756, 870, 1509
BlsI GCNGC 7 cut(s) 112, 668, 727, 754, 757, 871, 1510
BmcAI AGTACT 2 cut(s) 18, 593
Bme1390I CCNGG 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 923
BmiI GGNNCC 2 cut(s) 714, 1342
BmrFI CCNGG 1 cut(s) 584
BmrI ACTGGG 2 cut(s) 220, 604
BmsI GCATC 1 cut(s) 987
BmuI ACTGGG 2 cut(s) 220, 604
BpiI GAAGAC 4 cut(s) 504, 864, 1013, 1138
Bpu14I TTCGAA 2 cut(s) 1131, 1532
BpuEI CTTGAG 2 cut(s) 1176, 1469
BpuMI CCSGG 1 cut(s) 584
BsaAI YACGTR 1 cut(s) 1219
BsaBI GATNNNNATC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 319, 827
BsaWI WCCGGW 1 cut(s) 336
BsaXI ACNNNNNCTCC 4 cut(s) 570, 600, 1371, 1401
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 172, 532
Bse118I RCCGGY 2 cut(s) 336, 398
Bse1I ACTGG 6 cut(s) 166, 215, 599, 905, 1015, 1044
Bse3DI GCAATG 3 cut(s) 402, 720, 1374
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 319, 827
BseGI GGATG 3 cut(s) 220, 253, 738
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 40, 172, 532
BseMI GCAATG 3 cut(s) 402, 720, 1374
BseMII CTCAG 2 cut(s) 27, 864
BseNI ACTGG 6 cut(s) 166, 215, 599, 905, 1015, 1044
BseXI GCAGC 6 cut(s) 122, 653, 737, 742, 764, 881
BsgI GTGCAG 4 cut(s) 551, 1295, 1320, 1565
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 1029
BshTI ACCGGT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 3 cut(s) 337, 399, 583
BsiWI CGTACG 1 cut(s) 1215
BslFI GGGAC 2 cut(s) 507, 661
BslI CCNNNNNNNGG 3 cut(s) 40, 172, 532
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 2 cut(s) 507, 661
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 1 cut(s) 1029
Bso31I GGTCTC 1 cut(s) 573
BsoBI CYCGRG 1 cut(s) 923
Bsp119I TTCGAA 2 cut(s) 1131, 1532
Bsp1286I GDGCHC 2 cut(s) 234, 615
Bsp143I GATC 5 cut(s) 235, 274, 304, 1206, 1340
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 3 cut(s) 536, 656, 1508
BspANI GGCC 1 cut(s) 1029
BspCNI CTCAG 2 cut(s) 26, 865
BspFNI CGCG 1 cut(s) 396
BspHI TCATGA 3 cut(s) 309, 816, 1565
BspLI GGNNCC 2 cut(s) 714, 1342
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 3 cut(s) 312, 1335, 1348
BspT104I TTCGAA 2 cut(s) 1131, 1532
BspTNI GGTCTC 1 cut(s) 573
BsrDI GCAATG 3 cut(s) 402, 720, 1374
BsrFI RCCGGY 2 cut(s) 336, 398
BsrI ACTGG 6 cut(s) 166, 215, 599, 905, 1015, 1044
BssAI RCCGGY 2 cut(s) 336, 398
BssECI CCNNGG 2 cut(s) 319, 827
BssMI GATC 5 cut(s) 235, 274, 304, 1206, 1340
BssNAI GTATAC 1 cut(s) 769
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 319, 827
Bst1107I GTATAC 1 cut(s) 769
Bst2BI CACGAG 1 cut(s) 227
Bst4CI ACNGT 4 cut(s) 43, 1064, 1466, 1543
Bst6I CTCTTC 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 1219
BstBI TTCGAA 2 cut(s) 1131, 1532
BstC8I GCNNGC 6 cut(s) 400, 534, 660, 664, 972, 1548
BstDEI CTNAG 6 cut(s) 13, 440, 518, 853, 873, 907
BstDSI CCRYGG 1 cut(s) 827
BstF5I GGATG 3 cut(s) 220, 253, 738
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 5 cut(s) 238, 277, 307, 1209, 1343
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 5 cut(s) 235, 274, 304, 1206, 1340
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 404, 878
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 936
BstSNI TACGTA 1 cut(s) 1219
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 6 cut(s) 122, 653, 737, 742, 764, 881
BstV2I GAAGAC 4 cut(s) 504, 864, 1013, 1138
BstX2I RGATCY 2 cut(s) 304, 1340
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 2 cut(s) 304, 1340
BstZ17I GTATAC 1 cut(s) 769
BsuRI GGCC 1 cut(s) 1029
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 3 cut(s) 220, 253, 738
Cac8I GCNNGC 6 cut(s) 400, 534, 660, 664, 972, 1548
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 3 cut(s) 309, 816, 1565
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 2 cut(s) 336, 398
CseI GACGC 1 cut(s) 63
Csp6I GTAC 9 cut(s) 17, 280, 592, 690, 920, 1216, 1333, 1516, 1557
CspAI ACCGGT 1 cut(s) 336
CviAII CATG 8 cut(s) 310, 561, 749, 817, 828, 895, 1336, 1566
CviQI GTAC 9 cut(s) 17, 280, 592, 690, 920, 1216, 1333, 1516, 1557
DdeI CTNAG 6 cut(s) 13, 440, 518, 853, 873, 907
DpnI GATC 5 cut(s) 237, 276, 306, 1208, 1342
DpnII GATC 5 cut(s) 235, 274, 304, 1206, 1340
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 551
Eco105I TACGTA 1 cut(s) 1219
Eco130I CCWWGG 2 cut(s) 319, 827
Eco24I GRGCYC 2 cut(s) 234, 615
Eco31I GGTCTC 1 cut(s) 573
Eco32I GATATC 1 cut(s) 932
Eco57I CTGAAG 1 cut(s) 1022
Eco88I CYCGRG 1 cut(s) 923
EcoRI GAATTC 1 cut(s) 1282
EcoRV GATATC 1 cut(s) 932
EcoT14I CCWWGG 2 cut(s) 319, 827
EcoT38I GRGCYC 2 cut(s) 234, 615
ErhI CCWWGG 2 cut(s) 319, 827
FaeI CATG 8 cut(s) 313, 564, 752, 820, 831, 898, 1339, 1569
FaqI GGGAC 2 cut(s) 507, 661
FatI CATG 8 cut(s) 309, 560, 748, 816, 827, 894, 1335, 1565
FauI CCCGC 1 cut(s) 663
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 7 cut(s) 111, 667, 726, 753, 756, 870, 1509
FokI GGATG 3 cut(s) 227, 260, 725
FriOI GRGCYC 2 cut(s) 234, 615
Fsp4HI GCNGC 7 cut(s) 111, 667, 726, 753, 756, 870, 1509
FspBI CTAG 2 cut(s) 693, 956
GlaI GCGC 1 cut(s) 397
GluI GCNGC 7 cut(s) 111, 667, 726, 753, 756, 870, 1509
HaeIII GGCC 1 cut(s) 1029
HapII CCGG 3 cut(s) 337, 399, 583
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 398
Hin1II CATG 8 cut(s) 313, 564, 752, 820, 831, 898, 1339, 1569
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 8 cut(s) 324, 391, 447, 469, 701, 1082, 1143, 1534
HpaII CCGG 3 cut(s) 337, 399, 583
HphI GGTGA 2 cut(s) 598, 1283
Hpy166II GTNNAC 3 cut(s) 468, 769, 1431
Hpy188I TCNGA 6 cut(s) 48, 186, 247, 706, 786, 988
Hpy188III TCNNGA 8 cut(s) 227, 310, 817, 925, 1086, 1321, 1486, 1566
Hpy8I GTNNAC 3 cut(s) 468, 769, 1431
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 4 cut(s) 43, 1064, 1466, 1543
HpyCH4IV ACGT 3 cut(s) 464, 1214, 1218
HpyCH4V TGCA 9 cut(s) 532, 725, 752, 938, 946, 1301, 1312, 1361, 1546
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 878
HpyF3I CTNAG 6 cut(s) 13, 440, 518, 853, 873, 907
HpySE526I ACGT 3 cut(s) 464, 1214, 1218
Hsp92II CATG 8 cut(s) 313, 564, 752, 820, 831, 898, 1339, 1569
HspAI GCGC 1 cut(s) 396
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 5 cut(s) 235, 274, 304, 1206, 1340
LmnI GCTCC 7 cut(s) 176, 509, 712, 829, 959, 1094, 1379
Lsp1109I GCAGC 6 cut(s) 122, 653, 737, 742, 764, 881
LweI GCATC 1 cut(s) 987
MaeI CTAG 2 cut(s) 693, 956
MaeII ACGT 3 cut(s) 464, 1214, 1218
MaeIII GTNAC 8 cut(s) 80, 332, 460, 635, 1049, 1112, 1210, 1394
MalI GATC 5 cut(s) 237, 276, 306, 1208, 1342
MboI GATC 5 cut(s) 235, 274, 304, 1206, 1340
MboII GAAGA 9 cut(s) 150, 308, 387, 509, 869, 1015, 1018, 1138, 1216
MflI RGATCY 2 cut(s) 304, 1340
MhlI GDGCHC 2 cut(s) 234, 615
MlyI GAGTC 3 cut(s) 333, 463, 1152
MroNI GCCGGC 1 cut(s) 398
MroXI GAANNNNTTC 2 cut(s) 151, 902
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 1244
MspA1I CMGCKG 3 cut(s) 755, 872, 1508
MspI CCGG 3 cut(s) 337, 399, 583
MspR9I CCNGG 1 cut(s) 584
Mva1269I GAATGC 1 cut(s) 826
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 404, 878
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 584
NcoI CCATGG 1 cut(s) 827
NdeII GATC 5 cut(s) 235, 274, 304, 1206, 1340
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 8 cut(s) 313, 564, 752, 820, 831, 898, 1339, 1569
NlaIV GGNNCC 2 cut(s) 714, 1342
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 564
NspV TTCGAA 2 cut(s) 1131, 1532
PagI TCATGA 3 cut(s) 309, 816, 1565
PciI ACATGT 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 1215
PctI GAATGC 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 400
PdmI GAANNNNTTC 2 cut(s) 151, 902
PfeI GAWTC 5 cut(s) 391, 447, 701, 1082, 1534
Pfl23II CGTACG 1 cut(s) 1215
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 7 cut(s) 112, 668, 727, 754, 757, 871, 1510
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 3 cut(s) 332, 463, 1151
PpsI GAGTC 3 cut(s) 332, 463, 1151
Ppu21I YACGTR 1 cut(s) 1219
PscI ACATGT 1 cut(s) 560
PspLI CGTACG 1 cut(s) 1215
PspN4I GGNNCC 2 cut(s) 714, 1342
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 2 cut(s) 304, 1340
PvuI CGATCG 1 cut(s) 238
PvuII CAGCTG 2 cut(s) 755, 872
RsaI GTAC 9 cut(s) 18, 281, 593, 691, 921, 1217, 1334, 1517, 1558
RsaNI GTAC 9 cut(s) 17, 280, 592, 690, 920, 1216, 1333, 1516, 1557
RseI CAYNNNNRTG 1 cut(s) 1244
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 7 cut(s) 111, 667, 726, 753, 756, 870, 1509
Sau3AI GATC 5 cut(s) 235, 274, 304, 1206, 1340
ScaI AGTACT 2 cut(s) 18, 593
SchI GAGTC 3 cut(s) 333, 463, 1152
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 2 cut(s) 234, 615
SfaNI GCATC 1 cut(s) 987
SfcI CTRYAG 1 cut(s) 936
SfuI TTCGAA 2 cut(s) 1131, 1532
SmiMI CAYNNNNRTG 1 cut(s) 1244
SmlI CTYRAG 2 cut(s) 1191, 1484
SmoI CTYRAG 2 cut(s) 1191, 1484
SnaBI TACGTA 1 cut(s) 1219
SpeI ACTAGT 1 cut(s) 692
SsiI CCGC 3 cut(s) 536, 656, 1508
SspMI CTAG 2 cut(s) 693, 956
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 2 cut(s) 319, 827
TaaI ACNGT 4 cut(s) 43, 1064, 1466, 1543
TaiI ACGT 3 cut(s) 467, 1217, 1221
TaqI TCGA 5 cut(s) 426, 495, 1131, 1425, 1532
TatI WGTACW 5 cut(s) 16, 591, 689, 919, 1332
TauI GCSGC 1 cut(s) 1511
TfiI GAWTC 5 cut(s) 391, 447, 701, 1082, 1534
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 6 cut(s) 110, 666, 725, 752, 755, 869
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 9 cut(s) 326, 412, 709, 833, 911, 1012, 1138, 1240, 1516
XapI RAATTY 4 cut(s) 7, 569, 1282, 1288
XceI RCATGY 1 cut(s) 564
XmiI GTMKAC 1 cut(s) 768
XmnI GAANNNNTTC 2 cut(s) 151, 902
XspI CTAG 2 cut(s) 693, 956
ZrmI AGTACT 2 cut(s) 18, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.