Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 362 - 509 | 1.3e-10 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 429 - 540 | 5.5e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 442 - 501 | 1.2e-11 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 452 - 499 | 1.7e-14 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1659 |
| AatII | GACGTC | 1 cut(s) | 2106 |
| Acc36I | ACCTGC | 2 cut(s) | 1106, 1256 |
| AccB1I | GGYRCC | 1 cut(s) | 1483 |
| AccI | GTMKAC | 2 cut(s) | 765, 936 |
| AccII | CGCG | 1 cut(s) | 32 |
| AccIII | TCCGGA | 1 cut(s) | 172 |
| AciI | CCGC | 6 cut(s) | 221, 506, 701, 1734, 1885, 2147 |
| AclI | AACGTT | 1 cut(s) | 1955 |
| AclWI | GGATC | 4 cut(s) | 781, 794, 805, 1797 |
| AcsI | RAATTY | 6 cut(s) | 711, 910, 1108, 1411, 1471, 1991 |
| AcuI | CTGAAG | 1 cut(s) | 2498 |
| AcvI | CACGTG | 1 cut(s) | 377 |
| AcyI | GRCGYC | 1 cut(s) | 2103 |
| AfaI | GTAC | 4 cut(s) | 677, 1502, 1812, 2306 |
| AfeI | AGCGCT | 1 cut(s) | 2284 |
| AflII | CTTAAG | 2 cut(s) | 25, 164 |
| AflIII | ACRYGT | 1 cut(s) | 1704 |
| AjnI | CCWGG | 1 cut(s) | 1770 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 296, 328, 355, 387, 1463, 1495 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 331, 363 |
| Alw21I | GWGCWC | 1 cut(s) | 1764 |
| Alw26I | GTCTC | 8 cut(s) | 174, 235, 461, 619, 751, 1035, 1058, 1385 |
| AlwI | GGATC | 4 cut(s) | 781, 794, 805, 1797 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 119, 922 |
| Aor13HI | TCCGGA | 1 cut(s) | 172 |
| Aor51HI | AGCGCT | 1 cut(s) | 2284 |
| AoxI | GGCC | 2 cut(s) | 661, 1308 |
| ApeKI | GCWGC | 4 cut(s) | 59, 1887, 1978, 2369 |
| ApoI | RAATTY | 6 cut(s) | 711, 910, 1108, 1411, 1471, 1991 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 777, 912, 1351 |
| AspLEI | GCGC | 2 cut(s) | 32, 2285 |
| AspS9I | GGNCC | 4 cut(s) | 122, 662, 1558, 1768 |
| AsuC2I | CCSGG | 1 cut(s) | 1529 |
| AsuHPI | GGTGA | 5 cut(s) | 218, 521, 948, 1612, 2200 |
| AsuII | TTCGAA | 1 cut(s) | 2381 |
| AvaII | GGWCC | 3 cut(s) | 122, 1558, 1768 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 933, 966 |
| BamHI | GGATCC | 1 cut(s) | 786 |
| BanI | GGYRCC | 1 cut(s) | 1483 |
| BbrPI | CACGTG | 1 cut(s) | 377 |
| Bbv12I | GWGCWC | 1 cut(s) | 1764 |
| BbvI | GCAGC | 4 cut(s) | 46, 1874, 1965, 2356 |
| BccI | CCATC | 2 cut(s) | 1049, 1997 |
| BceAI | ACGGC | 2 cut(s) | 74, 2439 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2361, 2395 |
| BciT130I | CCWGG | 1 cut(s) | 1772 |
| BciVI | GTATCC | 1 cut(s) | 977 |
| BclI | TGATCA | 1 cut(s) | 586 |
| BcnI | CCSGG | 1 cut(s) | 1529 |
| BcoDI | GTCTC | 8 cut(s) | 174, 235, 461, 619, 751, 1035, 1058, 1385 |
| BfaI | CTAG | 5 cut(s) | 336, 1160, 1494, 2160, 2363 |
| BfmI | CTRYAG | 1 cut(s) | 2370 |
| BfoI | RGCGCY | 1 cut(s) | 2286 |
| BfrI | CTTAAG | 2 cut(s) | 25, 164 |
| BfuAI | ACCTGC | 2 cut(s) | 1106, 1256 |
| BfuI | GTATCC | 1 cut(s) | 977 |
| BisI | GCNGC | 4 cut(s) | 60, 1888, 1979, 2370 |
| BlsI | GCNGC | 4 cut(s) | 61, 1889, 1980, 2371 |
| BmcAI | AGTACT | 1 cut(s) | 677 |
| Bme1390I | CCNGG | 2 cut(s) | 1529, 1772 |
| Bme18I | GGWCC | 3 cut(s) | 122, 1558, 1768 |
| BmgT120I | GGNCC | 4 cut(s) | 122, 662, 1558, 1768 |
| BmiI | GGNNCC | 2 cut(s) | 788, 1485 |
| BmrFI | CCNGG | 2 cut(s) | 1529, 1772 |
| BmsI | GCATC | 6 cut(s) | 375, 559, 1110, 1114, 1736, 1838 |
| BoxI | GACNNNNGTC | 1 cut(s) | 127 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1785 |
| Bpu14I | TTCGAA | 1 cut(s) | 2381 |
| BpuEI | CTTGAG | 4 cut(s) | 701, 1346, 1547, 2231 |
| BpuMI | CCSGG | 1 cut(s) | 1529 |
| BsaAI | YACGTR | 1 cut(s) | 377 |
| BsaHI | GRCGYC | 1 cut(s) | 2103 |
| BsaI | GGTCTC | 1 cut(s) | 235 |
| BsaJI | CCNNGG | 3 cut(s) | 438, 988, 2094 |
| BsaWI | WCCGGW | 2 cut(s) | 145, 172 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1671, 1701 |
| Bse118I | RCCGGY | 1 cut(s) | 211 |
| Bse1I | ACTGG | 3 cut(s) | 124, 125, 2295 |
| Bse3DI | GCAATG | 3 cut(s) | 534, 571, 1023 |
| BseAI | TCCGGA | 1 cut(s) | 172 |
| BseBI | CCWGG | 1 cut(s) | 1772 |
| BseDI | CCNNGG | 3 cut(s) | 438, 988, 2094 |
| BseGI | GGATG | 7 cut(s) | 390, 449, 1101, 1129, 1287, 2104, 2355 |
| BseMI | GCAATG | 3 cut(s) | 534, 571, 1023 |
| BseMII | CTCAG | 3 cut(s) | 408, 456, 735 |
| BseNI | ACTGG | 3 cut(s) | 124, 125, 2295 |
| BseRI | GAGGAG | 2 cut(s) | 571, 1649 |
| BseXI | GCAGC | 4 cut(s) | 46, 1874, 1965, 2356 |
| BseYI | CCCAGC | 1 cut(s) | 1948 |
| BsgI | GTGCAG | 3 cut(s) | 1277, 2334, 2409 |
| Bsh1236I | CGCG | 1 cut(s) | 32 |
| BshFI | GGCC | 2 cut(s) | 663, 1310 |
| BshNI | GGYRCC | 1 cut(s) | 1483 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1764 |
| BsiSI | CCGG | 6 cut(s) | 96, 146, 173, 212, 1528, 1781 |
| BslFI | GGGAC | 1 cut(s) | 1693 |
| BsmAI | GTCTC | 8 cut(s) | 174, 235, 461, 619, 751, 1035, 1058, 1385 |
| BsmFI | GGGAC | 1 cut(s) | 1693 |
| BsnI | GGCC | 2 cut(s) | 663, 1310 |
| Bso31I | GGTCTC | 1 cut(s) | 235 |
| Bsp119I | TTCGAA | 1 cut(s) | 2381 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1764 |
| Bsp13I | TCCGGA | 1 cut(s) | 172 |
| Bsp1407I | TGTACA | 1 cut(s) | 1500 |
| Bsp143I | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| BspACI | CCGC | 6 cut(s) | 221, 506, 701, 1734, 1885, 2147 |
| BspANI | GGCC | 2 cut(s) | 663, 1310 |
| BspCNI | CTCAG | 3 cut(s) | 409, 457, 736 |
| BspEI | TCCGGA | 1 cut(s) | 172 |
| BspFNI | CGCG | 1 cut(s) | 32 |
| BspHI | TCATGA | 1 cut(s) | 1972 |
| BspLI | GGNNCC | 2 cut(s) | 788, 1485 |
| BspMAI | CTGCAG | 1 cut(s) | 2374 |
| BspMI | ACCTGC | 2 cut(s) | 1106, 1256 |
| BspPI | GGATC | 4 cut(s) | 781, 794, 805, 1797 |
| BspQI | GCTCTTC | 2 cut(s) | 965, 2199 |
| BspT104I | TTCGAA | 1 cut(s) | 2381 |
| BspT107I | GGYRCC | 1 cut(s) | 1483 |
| BspTI | CTTAAG | 2 cut(s) | 25, 164 |
| BspTNI | GGTCTC | 1 cut(s) | 235 |
| BsrDI | GCAATG | 3 cut(s) | 534, 571, 1023 |
| BsrFI | RCCGGY | 1 cut(s) | 211 |
| BsrGI | TGTACA | 1 cut(s) | 1500 |
| BsrI | ACTGG | 3 cut(s) | 124, 125, 2295 |
| BssAI | RCCGGY | 1 cut(s) | 211 |
| BssECI | CCNNGG | 3 cut(s) | 438, 988, 2094 |
| BssMI | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| BssNI | GRCGYC | 1 cut(s) | 2103 |
| BssT1I | CCWWGG | 3 cut(s) | 438, 988, 2094 |
| Bst2UI | CCWGG | 1 cut(s) | 1772 |
| Bst6I | CTCTTC | 6 cut(s) | 798, 965, 2121, 2199, 2295, 2523 |
| BstACI | GRCGYC | 1 cut(s) | 2103 |
| BstAFI | CTTAAG | 2 cut(s) | 25, 164 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 578 |
| BstAUI | TGTACA | 1 cut(s) | 1500 |
| BstBAI | YACGTR | 1 cut(s) | 377 |
| BstBI | TTCGAA | 1 cut(s) | 2381 |
| BstC8I | GCNNGC | 3 cut(s) | 369, 435, 1674 |
| BstDEI | CTNAG | 8 cut(s) | 322, 417, 465, 679, 744, 848, 1037, 1785 |
| BstF5I | GGATG | 7 cut(s) | 390, 449, 1101, 1129, 1287, 2104, 2355 |
| BstFNI | CGCG | 1 cut(s) | 32 |
| BstH2I | RGCGCY | 1 cut(s) | 2286 |
| BstHHI | GCGC | 2 cut(s) | 32, 2285 |
| BstKTI | GATC | 5 cut(s) | 589, 789, 813, 1792, 2048 |
| BstMAI | GTCTC | 8 cut(s) | 174, 235, 461, 619, 751, 1035, 1058, 1385 |
| BstMBI | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 11, 68, 578, 1646 |
| BstNI | CCWGG | 1 cut(s) | 1772 |
| BstNSI | RCATGY | 5 cut(s) | 741, 1456, 1501, 1708, 2255 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 127 |
| BstSCI | CCNGG | 2 cut(s) | 1527, 1770 |
| BstSFI | CTRYAG | 1 cut(s) | 2370 |
| BstUI | CGCG | 1 cut(s) | 32 |
| BstV1I | GCAGC | 4 cut(s) | 46, 1874, 1965, 2356 |
| BstX2I | RGATCY | 2 cut(s) | 786, 810 |
| BstYI | RGATCY | 2 cut(s) | 786, 810 |
| BsuI | GTATCC | 1 cut(s) | 977 |
| BsuRI | GGCC | 2 cut(s) | 663, 1310 |
| BtgZI | GCGATG | 2 cut(s) | 62, 144 |
| BtsCI | GGATG | 7 cut(s) | 390, 449, 1101, 1129, 1287, 2104, 2355 |
| BtsI | GCAGTG | 1 cut(s) | 1230 |
| BtsIMutI | CAGTG | 5 cut(s) | 117, 132, 884, 1230, 1552 |
| BveI | ACCTGC | 2 cut(s) | 1106, 1256 |
| Cac8I | GCNNGC | 3 cut(s) | 369, 435, 1674 |
| CaiI | CAGNNNCTG | 2 cut(s) | 119, 922 |
| CciI | TCATGA | 1 cut(s) | 1972 |
| CfoI | GCGC | 2 cut(s) | 32, 2285 |
| Cfr10I | RCCGGY | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 4 cut(s) | 122, 662, 1558, 1768 |
| CseI | GACGC | 1 cut(s) | 971 |
| Csp6I | GTAC | 4 cut(s) | 676, 1501, 1811, 2305 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 803, 838, 1206, 1241 |
| CviAII | CATG | 9 cut(s) | 738, 1151, 1453, 1498, 1705, 1731, 1765, 1973, 2252 |
| CviQI | GTAC | 4 cut(s) | 676, 1501, 1811, 2305 |
| DdeI | CTNAG | 8 cut(s) | 322, 417, 465, 679, 744, 848, 1037, 1785 |
| DpnI | GATC | 5 cut(s) | 588, 788, 812, 1791, 2047 |
| DpnII | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| DraI | TTTAAA | 2 cut(s) | 9, 1467 |
| Eam1104I | CTCTTC | 6 cut(s) | 798, 965, 2121, 2199, 2295, 2523 |
| EarI | CTCTTC | 6 cut(s) | 798, 965, 2121, 2199, 2295, 2523 |
| Eco130I | CCWWGG | 3 cut(s) | 438, 988, 2094 |
| Eco31I | GGTCTC | 1 cut(s) | 235 |
| Eco32I | GATATC | 1 cut(s) | 1165 |
| Eco47I | GGWCC | 3 cut(s) | 122, 1558, 1768 |
| Eco47III | AGCGCT | 1 cut(s) | 2284 |
| Eco57I | CTGAAG | 1 cut(s) | 2498 |
| Eco72I | CACGTG | 1 cut(s) | 377 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1558 |
| EcoRII | CCWGG | 1 cut(s) | 1770 |
| EcoRV | GATATC | 1 cut(s) | 1165 |
| EcoT14I | CCWWGG | 3 cut(s) | 438, 988, 2094 |
| EcoT22I | ATGCAT | 1 cut(s) | 1729 |
| ErhI | CCWWGG | 3 cut(s) | 438, 988, 2094 |
| FaeI | CATG | 9 cut(s) | 741, 1154, 1456, 1501, 1708, 1734, 1768, 1976, 2255 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 8, 40, 2193, 2225 |
| FaqI | GGGAC | 1 cut(s) | 1693 |
| FatI | CATG | 9 cut(s) | 737, 1150, 1452, 1497, 1704, 1730, 1764, 1972, 2251 |
| FauI | CCCGC | 2 cut(s) | 214, 499 |
| FauNDI | CATATG | 1 cut(s) | 1723 |
| FbaI | TGATCA | 1 cut(s) | 586 |
| FblI | GTMKAC | 2 cut(s) | 765, 936 |
| Fnu4HI | GCNGC | 4 cut(s) | 60, 1888, 1979, 2370 |
| FokI | GGATG | 7 cut(s) | 397, 456, 1088, 1136, 1274, 2111, 2362 |
| Fsp4HI | GCNGC | 4 cut(s) | 60, 1888, 1979, 2370 |
| FspBI | CTAG | 5 cut(s) | 336, 1160, 1494, 2160, 2363 |
| GlaI | GCGC | 2 cut(s) | 31, 2284 |
| GluI | GCNGC | 4 cut(s) | 60, 1888, 1979, 2370 |
| GsaI | CCCAGC | 1 cut(s) | 1952 |
| HaeII | RGCGCY | 1 cut(s) | 2286 |
| HaeIII | GGCC | 2 cut(s) | 663, 1310 |
| HapII | CCGG | 6 cut(s) | 96, 146, 173, 212, 1528, 1781 |
| HgaI | GACGC | 1 cut(s) | 971 |
| HhaI | GCGC | 2 cut(s) | 32, 2285 |
| Hin1I | GRCGYC | 1 cut(s) | 2103 |
| Hin1II | CATG | 9 cut(s) | 741, 1154, 1456, 1501, 1708, 1734, 1768, 1976, 2255 |
| Hin6I | GCGC | 2 cut(s) | 30, 2283 |
| HinP1I | GCGC | 2 cut(s) | 30, 2283 |
| HincII | GTYRAC | 3 cut(s) | 486, 796, 937 |
| HindII | GTYRAC | 3 cut(s) | 486, 796, 937 |
| HindIII | AAGCTT | 2 cut(s) | 22, 431 |
| HpaII | CCGG | 6 cut(s) | 96, 146, 173, 212, 1528, 1781 |
| HphI | GGTGA | 5 cut(s) | 218, 521, 948, 1612, 2200 |
| Hpy166II | GTNNAC | 8 cut(s) | 209, 486, 766, 796, 937, 1543, 1702, 1811 |
| Hpy188I | TCNGA | 7 cut(s) | 108, 115, 303, 418, 453, 918, 1933 |
| Hpy8I | GTNNAC | 8 cut(s) | 209, 486, 766, 796, 937, 1543, 1702, 1811 |
| Hpy99I | CGWCG | 3 cut(s) | 355, 803, 2108 |
| HpyAV | CCTTC | 6 cut(s) | 592, 644, 1182, 1433, 2164, 2232 |
| HpyCH4IV | ACGT | 6 cut(s) | 309, 376, 550, 1698, 1955, 2103 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 11, 68, 578, 1646 |
| HpyF3I | CTNAG | 8 cut(s) | 322, 417, 465, 679, 744, 848, 1037, 1785 |
| HpySE526I | ACGT | 6 cut(s) | 309, 376, 550, 1698, 1955, 2103 |
| Hsp92I | GRCGYC | 1 cut(s) | 2103 |
| Hsp92II | CATG | 9 cut(s) | 741, 1154, 1456, 1501, 1708, 1734, 1768, 1976, 2255 |
| HspAI | GCGC | 2 cut(s) | 30, 2283 |
| Kpn2I | TCCGGA | 1 cut(s) | 172 |
| Ksp22I | TGATCA | 1 cut(s) | 586 |
| Kzo9I | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| LguI | GCTCTTC | 2 cut(s) | 965, 2199 |
| LmnI | GCTCC | 1 cut(s) | 653 |
| Lsp1109I | GCAGC | 4 cut(s) | 46, 1874, 1965, 2356 |
| LweI | GCATC | 6 cut(s) | 375, 559, 1110, 1114, 1736, 1838 |
| MaeI | CTAG | 5 cut(s) | 336, 1160, 1494, 2160, 2363 |
| MaeII | ACGT | 6 cut(s) | 309, 376, 550, 1698, 1955, 2103 |
| MaeIII | GTNAC | 3 cut(s) | 1228, 1302, 1600 |
| MalI | GATC | 5 cut(s) | 588, 788, 812, 1791, 2047 |
| MboI | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| MflI | RGATCY | 2 cut(s) | 786, 810 |
| MhlI | GDGCHC | 1 cut(s) | 1764 |
| MlyI | GAGTC | 3 cut(s) | 755, 1016, 2165 |
| MmeI | TCCRAC | 2 cut(s) | 210, 984 |
| Mph1103I | ATGCAT | 1 cut(s) | 1729 |
| MroI | TCCGGA | 1 cut(s) | 172 |
| MroXI | GAANNNNTTC | 3 cut(s) | 777, 912, 1351 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2256 |
| MspA1I | CMGCKG | 1 cut(s) | 1887 |
| MspCI | CTTAAG | 2 cut(s) | 25, 164 |
| MspI | CCGG | 6 cut(s) | 96, 146, 173, 212, 1528, 1781 |
| MspR9I | CCNGG | 2 cut(s) | 1529, 1772 |
| MvaI | CCWGG | 1 cut(s) | 1772 |
| MvnI | CGCG | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 11, 68, 578, 1646 |
| NciI | CCSGG | 1 cut(s) | 1529 |
| NdeI | CATATG | 1 cut(s) | 1723 |
| NdeII | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| NlaIII | CATG | 9 cut(s) | 741, 1154, 1456, 1501, 1708, 1734, 1768, 1976, 2255 |
| NlaIV | GGNNCC | 2 cut(s) | 788, 1485 |
| NmuCI | GTSAC | 2 cut(s) | 1228, 1600 |
| NsiI | ATGCAT | 1 cut(s) | 1729 |
| NspI | RCATGY | 5 cut(s) | 741, 1456, 1501, 1708, 2255 |
| NspV | TTCGAA | 1 cut(s) | 2381 |
| PagI | TCATGA | 1 cut(s) | 1972 |
| PciI | ACATGT | 1 cut(s) | 1704 |
| PciSI | GCTCTTC | 2 cut(s) | 965, 2199 |
| PdmI | GAANNNNTTC | 3 cut(s) | 777, 912, 1351 |
| PfoI | TCCNGGA | 1 cut(s) | 1527 |
| PkrI | GCNGC | 4 cut(s) | 61, 1889, 1980, 2371 |
| PleI | GAGTC | 3 cut(s) | 754, 1015, 2164 |
| PmaCI | CACGTG | 1 cut(s) | 377 |
| PmlI | CACGTG | 1 cut(s) | 377 |
| PpsI | GAGTC | 3 cut(s) | 754, 1015, 2164 |
| Ppu21I | YACGTR | 1 cut(s) | 377 |
| PpuMI | RGGWCCY | 1 cut(s) | 1558 |
| PscI | ACATGT | 1 cut(s) | 1704 |
| PshAI | GACNNNNGTC | 1 cut(s) | 127 |
| PsiI | TTATAA | 1 cut(s) | 1659 |
| Psp1406I | AACGTT | 1 cut(s) | 1955 |
| Psp5II | RGGWCCY | 1 cut(s) | 1558 |
| Psp6I | CCWGG | 1 cut(s) | 1770 |
| PspCI | CACGTG | 1 cut(s) | 377 |
| PspFI | CCCAGC | 1 cut(s) | 1948 |
| PspGI | CCWGG | 1 cut(s) | 1770 |
| PspN4I | GGNNCC | 2 cut(s) | 788, 1485 |
| PspPI | GGNCC | 4 cut(s) | 122, 662, 1558, 1768 |
| PspPPI | RGGWCCY | 1 cut(s) | 1558 |
| PstI | CTGCAG | 1 cut(s) | 2374 |
| PstNI | CAGNNNCTG | 2 cut(s) | 119, 922 |
| PsuI | RGATCY | 2 cut(s) | 786, 810 |
| RsaI | GTAC | 4 cut(s) | 677, 1502, 1812, 2306 |
| RsaNI | GTAC | 4 cut(s) | 676, 1501, 1811, 2305 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2256 |
| SalI | GTCGAC | 1 cut(s) | 935 |
| SapI | GCTCTTC | 2 cut(s) | 965, 2199 |
| SatI | GCNGC | 4 cut(s) | 60, 1888, 1979, 2370 |
| Sau3AI | GATC | 5 cut(s) | 586, 786, 810, 1789, 2045 |
| Sau96I | GGNCC | 4 cut(s) | 122, 662, 1558, 1768 |
| ScaI | AGTACT | 1 cut(s) | 677 |
| SchI | GAGTC | 3 cut(s) | 755, 1016, 2165 |
| ScrFI | CCNGG | 2 cut(s) | 1529, 1772 |
| SduI | GDGCHC | 1 cut(s) | 1764 |
| SfaNI | GCATC | 6 cut(s) | 375, 559, 1110, 1114, 1736, 1838 |
| SfcI | CTRYAG | 1 cut(s) | 2370 |
| SfuI | TTCGAA | 1 cut(s) | 2381 |
| SinI | GGWCC | 3 cut(s) | 122, 1558, 1768 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2256 |
| SmlI | CTYRAG | 6 cut(s) | 25, 164, 716, 1325, 1562, 2210 |
| SmoI | CTYRAG | 6 cut(s) | 25, 164, 716, 1325, 1562, 2210 |
| SsiI | CCGC | 6 cut(s) | 221, 506, 701, 1734, 1885, 2147 |
| SspI | AATATT | 2 cut(s) | 872, 2117 |
| SspMI | CTAG | 5 cut(s) | 336, 1160, 1494, 2160, 2363 |
| StyD4I | CCNGG | 2 cut(s) | 1527, 1770 |
| StyI | CCWWGG | 3 cut(s) | 438, 988, 2094 |
| TaiI | ACGT | 6 cut(s) | 312, 379, 553, 1701, 1958, 2106 |
| TaqI | TCGA | 3 cut(s) | 274, 936, 2381 |
| TatI | WGTACW | 3 cut(s) | 675, 1500, 1810 |
| TscAI | CASTG | 5 cut(s) | 124, 132, 891, 1237, 1552 |
| TseFI | GTSAC | 2 cut(s) | 1228, 1600 |
| TseI | GCWGC | 4 cut(s) | 59, 1887, 1978, 2369 |
| Tsp45I | GTSAC | 2 cut(s) | 1228, 1600 |
| TspDTI | ATGAA | 9 cut(s) | 786, 1034, 1164, 1167, 1586, 1682, 1881, 1889, 2213 |
| TspRI | CASTG | 5 cut(s) | 124, 132, 891, 1237, 1552 |
| Vha464I | CTTAAG | 2 cut(s) | 25, 164 |
| VpaK11BI | GGWCC | 3 cut(s) | 122, 1558, 1768 |
| XapI | RAATTY | 6 cut(s) | 711, 910, 1108, 1411, 1471, 1991 |
| XceI | RCATGY | 5 cut(s) | 741, 1456, 1501, 1708, 2255 |
| XmiI | GTMKAC | 2 cut(s) | 765, 936 |
| XmnI | GAANNNNTTC | 3 cut(s) | 777, 912, 1351 |
| XspI | CTAG | 5 cut(s) | 336, 1160, 1494, 2160, 2363 |
| ZraI | GACGTC | 1 cut(s) | 2104 |
| ZrmI | AGTACT | 1 cut(s) | 677 |
| Zsp2I | ATGCAT | 1 cut(s) | 1729 |