Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Reverse (-)

62167560 .. 62171126

Gene Structure 3567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACAAAGGAGATTTTGAAGCTGTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTGTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCGGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTGTTGGCATTCCGAATTTAGCGGTGAGGACCTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

148

Amino Acids

16.91

Weight (kDa)

5.09

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	350, 421
AdeI	CACNNNGTG	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	69, 128, 235, 387
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	2 cut(s)	133, 238
AluI	AGCT	2 cut(s)	133, 238
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	350, 421
AspS9I	GGNCC	2 cut(s)	340, 435
AsuHPI	GGTGA	3 cut(s)	264, 374, 442
AvaII	GGWCC	2 cut(s)	340, 435
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	340, 435
BmgT120I	GGNCC	2 cut(s)	340, 435
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	216, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	217, 275, 360
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	99, 393
BspACI	CCGC	1 cut(s)	428
BspHI	TCATGA	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	99, 393
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	290
BstKTI	GATC	2 cut(s)	102, 396
BstMBI	GATC	2 cut(s)	99, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	71
CciI	TCATGA	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	340, 435
CviAII	CATG	1 cut(s)	444
CviJI	RGCY	4 cut(s)	133, 238, 313, 359
CviKI_1	RGCY	4 cut(s)	133, 238, 313, 359
DpnI	GATC	2 cut(s)	101, 395
DpnII	GATC	2 cut(s)	99, 393
DraI	TTTAAA	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	206
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	340, 435
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	2 cut(s)	340, 435
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	447
FaiI	YATR	6 cut(s)	8, 84, 251, 399, 405, 445
FatI	CATG	1 cut(s)	443
Fnu4HI	GCNGC	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
HapII	CCGG	3 cut(s)	217, 275, 360
Hin1II	CATG	1 cut(s)	447
HinfI	GANTC	3 cut(s)	105, 124, 323
HpaII	CCGG	3 cut(s)	217, 275, 360
HphI	GGTGA	3 cut(s)	264, 374, 442
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	104, 420
Hpy188III	TCNNGA	4 cut(s)	69, 128, 347, 444
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	303, 331, 353
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	332, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	99, 393
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	230, 288, 290, 317, 332, 360, 373
Lsp1109I	GCAGC	1 cut(s)	383
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	3 cut(s)	152, 212, 362
MalI	GATC	2 cut(s)	101, 395
MboI	GATC	2 cut(s)	99, 393
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	4 cut(s)	174, 187, 350, 421
MlyI	GAGTC	2 cut(s)	114, 332
MnlI	CCTC	1 cut(s)	426
MseI	TTAA	1 cut(s)	354
MspI	CCGG	3 cut(s)	217, 275, 360
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	2 cut(s)	99, 393
NlaIII	CATG	1 cut(s)	447
NlaIV	GGNNCC	1 cut(s)	314
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	2 cut(s)	212, 362
PagI	TCATGA	1 cut(s)	443
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	2 cut(s)	113, 331
PpsI	GAGTC	2 cut(s)	113, 331
Ppu21I	YACGTR	1 cut(s)	290
PpuMI	RGGWCCY	2 cut(s)	340, 435
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	2 cut(s)	340, 435
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	2 cut(s)	340, 435
PspPPI	RGGWCCY	2 cut(s)	340, 435
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	99, 393
Sau96I	GGNCC	2 cut(s)	340, 435
SchI	GAGTC	2 cut(s)	114, 332
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	5 cut(s)	135, 240, 292, 342, 440
SfcI	CTRYAG	1 cut(s)	397
SinI	GGWCC	2 cut(s)	340, 435
Sse9I	AATT	4 cut(s)	174, 187, 350, 421
SsiI	CCGC	1 cut(s)	428
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	292
TasI	AATT	4 cut(s)	174, 187, 350, 421
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	212, 362
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	212, 362
TspDTI	ATGAA	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	340, 435
XapI	RAATTY	2 cut(s)	350, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.