Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Forward (+)

33462348 .. 33476270

Gene Structure 13923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGCAAAGAAGTTCGTGTAGTATTACTTTGCCACTGTTCCTTGGTCTGCTGTTCAGCATCGTCTTCATCTTTTATTTGCATTCAGATTTTGGGAACAGTGTGCTCTCAGATAGTTTAACTGTCTACAGTGCAGAAGATTCGACTAGGCAGCTCTGCGGGGACATTTATTCAATACCGTGCGGTGGTACTTATCCCGATATCCAGGAAATCGATGATGCAGAATCTTTGGAGAGGGAATTGGACTTACCATGGTTTCCAGATTTATCCCATAGTGCGATGCCATTGCGCCGCAAAGAAGTTAGTCGCGAAAGGAAGCAGAGGTTTGCTTTCGGCAACACTCGTGGTATCCGTTTTGATAAGTTAGTCGACATGTGTGCCAATAGGCTAGGGACTGAAACCACTATTCAAGTGTTTGACAAATTGGGAAGAGAAACGGGTGTGAAAGAATGTAATGCATTGATAAAGAGATGCATAGAGGGAGCTAGGATTGCTCCTGATGAAGTAGTTGGAGAAAAGCATATGCAGTTGGCTTTTGAAATTTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAACATATGGTCCGTTTCTTGAATATCTTATCGACATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACGAAGGAGATTTTGAAGCTCTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTTTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCAGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTGTTGGCATTCCGAATTTAGCGGTTGAGGATGTCATTTCAAAATTTAAAAACTTGCACACAAAACTTGAGGTGACACCTTCATCTGTGTCATATGAGAAGCTTATCATCTACTGTTGCGGTTCACTTAAGGTGCATGTGGCTCTTGAGCTGGTGAATGAGATGTCTGAACAGGGTTTGACATTTTCGATGGAGGCATTACACTCCATTTTACAAGCTAGTAGTGAGAGTTGTGACTTTAATCTGGTTCACCAAATTTATTCAGTGATTAGCCGAGGCAATTTGAAGCCCAATAGCGAAACTTTCAGGAGTATGATAAATCTCTGTGTGAAAATGAAGGATTATGAGGGTGCCTATAGCATGCTGAGTGATTTGGAGAAAATGAATTTGACGCCCACAGCTGCCATGTACAATGCTATAATGGCTGGATATTTCCGAGAGAAGAACTTGTCCGGTGGGTTAAAGGTTCTCAAACAAATGAAAGAAGCAGATGTAAAACCAGATTCCCACACTTTCAGCCATCTGATAACCAACTGCAACTCTGAAGAGGACATAAACATGTATTATGAAGAAATGAAGCGATCTGGAATTCAAGTTACCAAGCAAGTTTTCATGGCACTTGTAAATGCATATGCAGCTTGTGGACAGTTTGAAAAGGCAAAACAGGTACTCTTAGACAAGGGAATTCCAGTAAAGAGCTTCAATGAGATTAAAAGTGTGCTTGTCCAAGCCCTTGCATCACATGGGCAATTGTCGGATGCATTTAATACATATGAAGAGATCAAGCAAGCTGGATGCAGTTTGGAGCCGAAAGCTGTTATAAGTCTTATCGAGCACCTTCAATCTGATGAAGAAGCATTAAGCAGATTACTCCTCCTACTTGAGACACTAAATGATCCAAACTATTGGCTTGATGGTTGCTTGAGAACTATCTTATATTGTGTTCGTTACAAGCATTTAAGACCTGCCGTCAATTTGCTTGAGCAACTCAGGGATCAGGTCTGTACTGACGAATTAGCTCTAGAAGTAATTTTTGATAAGGTGTTTTCCTTCATAGCAGAATCGGAGTCTACATCTTTAGAGTTTGGCCTAGATTTGCTTCATGCTATGAAGAGTGAGCTTGGCCTCACCCCTTCACGAAAATGTCTCGATTTTCTTCTCCACGCTTGTGTCACTGCCAAAGATCTGCAAAGTTCCCTATTTGTATGGCAAGAATATCAAGCCGCTGGCTTGCCTTACAATACCTTAAGCTTTTTAAGGATGTATCAAGCCCTTTTGGCTGCAGGGGACCGAAAGGCTGCAAAAGTTTTGGGACGTAAAATTCCTAAAGACGATCCTCATGTTCGGTCTATCATTGAATCATGTACACTGACTTATTTAGAGAAGAAGGAAGAAAAGAAAAAGAAAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

811

Amino Acids

92.01

Weight (kDa)

5.47

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	374 - 535	1.9e-12	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	446 - 561	2.8e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	461 - 519	2.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	472 - 519	2.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1841
Acc36I	ACCTGC	1 cut(s)	1993
AccB1I	GGYRCC	1 cut(s)	1370
AccI	GTMKAC	3 cut(s)	123, 366, 2090
AccII	CGCG	1 cut(s)	306
AciI	CCGC	7 cut(s)	156, 180, 289, 569, 1043, 1140, 2244
AclWI	GGATC	4 cut(s)	722, 1910, 2022, 2348
AcsI	RAATTY	9 cut(s)	537, 965, 1036, 1064, 1275, 1405, 1608, 1704, 2340
AcuI	CTGAAG	1 cut(s)	1584
AcyI	GRCGYC	1 cut(s)	1412
AdeI	CACNNNGTG	1 cut(s)	821
AfaI	GTAC	5 cut(s)	187, 1430, 1689, 2026, 2386
AfiI	CCNNNNNNNGG	2 cut(s)	182, 838
AflII	CTTAAG	2 cut(s)	1148, 2266
AflIII	ACRYGT	2 cut(s)	369, 1578
AhdI	GACNNNNNGTC	1 cut(s)	1988
AjnI	CCWGG	2 cut(s)	201, 918
AjuI	GAANNNNNNNTTGG	2 cut(s)	1613, 1645
AleI	CACNNNNGTG	1 cut(s)	2187
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
Alw21I	GWGCWC	3 cut(s)	105, 750, 1857
Alw26I	GTCTC	2 cut(s)	1898, 2171
AlwI	GGATC	4 cut(s)	722, 1910, 2022, 2348
AlwNI	CAGNNNCTG	1 cut(s)	981
AoxI	GGCC	2 cut(s)	2107, 2143
ApeKI	GCWGC	6 cut(s)	148, 986, 1421, 1655, 2300, 2318
ApoI	RAATTY	9 cut(s)	537, 965, 1036, 1064, 1275, 1405, 1608, 1704, 2340
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	590, 955, 2308
AsuHPI	GGTGA	5 cut(s)	879, 1105, 1186, 1262, 2140
AvaII	GGWCC	3 cut(s)	590, 955, 2308
BanI	GGYRCC	1 cut(s)	1370
BanII	GRGCYC	1 cut(s)	750
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	3 cut(s)	105, 750, 1857
BbvI	GCAGC	6 cut(s)	160, 998, 1408, 1667, 2287, 2305
BccI	CCATC	4 cut(s)	767, 1204, 1548, 1928
BceAI	ACGGC	1 cut(s)	1973
BcgI	CGANNNNNNTGC	6 cut(s)	120, 154, 265, 299, 356, 390
BciT130I	CCWGG	2 cut(s)	203, 920
BciVI	GTATCC	2 cut(s)	356, 686
BcoDI	GTCTC	2 cut(s)	1898, 2171
BfaI	CTAG	6 cut(s)	144, 386, 483, 1239, 2042, 2111
BfmI	CTRYAG	4 cut(s)	124, 1012, 1375, 2301
BfrI	CTTAAG	2 cut(s)	1148, 2266
BfuAI	ACCTGC	1 cut(s)	1993
BfuI	GTATCC	2 cut(s)	356, 686
BglI	GCCNNNNNGGC	1 cut(s)	2297
BglII	AGATCT	1 cut(s)	2203
BisI	GCNGC	8 cut(s)	149, 289, 987, 1422, 1656, 2244, 2301, 2319
BlsI	GCNGC	8 cut(s)	150, 290, 988, 1423, 1657, 2245, 2302, 2320
Bme1390I	CCNGG	2 cut(s)	203, 920
Bme18I	GGWCC	3 cut(s)	590, 955, 2308
BmeRI	GACNNNNNGTC	1 cut(s)	1988
BmgT120I	GGNCC	3 cut(s)	590, 955, 2308
BmiI	GGNNCC	4 cut(s)	929, 1372, 1827, 2309
BmrFI	CCNGG	2 cut(s)	203, 920
BmsI	GCATC	7 cut(s)	66, 205, 267, 458, 1766, 1768, 1805
BpiI	GAAGAC	1 cut(s)	55
BpuEI	CTTGAG	5 cut(s)	1109, 1187, 1922, 1963, 2021
Bsa29I	ATCGAT	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	905
BsaHI	GRCGYC	1 cut(s)	1412
BsaJI	CCNNGG	4 cut(s)	40, 248, 919, 1294
BsaWI	WCCGGW	3 cut(s)	831, 889, 1472
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 838
Bse1I	ACTGG	2 cut(s)	975, 1709
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	203, 920
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	4 cut(s)	40, 248, 919, 1294
BseGI	GGATG	4 cut(s)	1057, 1783, 1820, 2286
BseLI	CCNNNNNNNGG	2 cut(s)	182, 838
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	120, 1376, 2023
BseNI	ACTGG	2 cut(s)	975, 1709
BseRI	GAGGAG	1 cut(s)	1883
BseXI	GCAGC	6 cut(s)	160, 998, 1408, 1667, 2287, 2305
BsgI	GTGCAG	2 cut(s)	150, 1005
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	2109, 2145
BshNI	GGYRCC	1 cut(s)	1370
BshVI	ATCGAT	1 cut(s)	210
BsiHKAI	GWGCWC	3 cut(s)	105, 750, 1857
BsiSI	CCGG	3 cut(s)	832, 890, 1473
BslFI	GGGAC	4 cut(s)	173, 403, 2321, 2346
BslI	CCNNNNNNNGG	2 cut(s)	182, 838
BsmAI	GTCTC	2 cut(s)	1898, 2171
BsmFI	GGGAC	4 cut(s)	173, 403, 2321, 2346
BsmI	GAATGC	2 cut(s)	79, 1029
BsnI	GGCC	2 cut(s)	2109, 2145
Bsp1286I	GDGCHC	3 cut(s)	105, 750, 1857
Bsp1407I	TGTACA	2 cut(s)	1428, 2384
Bsp143I	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
Bsp19I	CCATGG	1 cut(s)	248
Bsp68I	TCGCGA	1 cut(s)	306
BspACI	CCGC	7 cut(s)	156, 180, 289, 569, 1043, 1140, 2244
BspANI	GGCC	2 cut(s)	2109, 2145
BspCNI	CTCAG	3 cut(s)	119, 1377, 2022
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	929, 1372, 1827, 2309
BspMAI	CTGCAG	1 cut(s)	2305
BspMI	ACCTGC	1 cut(s)	1993
BspPI	GGATC	4 cut(s)	722, 1910, 2022, 2348
BspT107I	GGYRCC	1 cut(s)	1370
BspTI	CTTAAG	2 cut(s)	1148, 2266
BsrDI	GCAATG	1 cut(s)	281
BsrGI	TGTACA	2 cut(s)	1428, 2384
BsrI	ACTGG	2 cut(s)	975, 1709
BssECI	CCNNGG	4 cut(s)	40, 248, 919, 1294
BssMI	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
BssNI	GRCGYC	1 cut(s)	1412
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	40, 248
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	203, 920
Bst4CI	ACNGT	8 cut(s)	36, 98, 121, 128, 177, 983, 1136, 1668
Bst6I	CTCTTC	5 cut(s)	421, 570, 1560, 1791, 2126
BstACI	GRCGYC	1 cut(s)	1412
BstAFI	CTTAAG	2 cut(s)	1148, 2266
BstAUI	TGTACA	2 cut(s)	1428, 2384
BstBAI	YACGTR	1 cut(s)	905
BstC8I	GCNNGC	4 cut(s)	1382, 1809, 2248, 2252
BstDEI	CTNAG	5 cut(s)	106, 856, 1385, 1693, 2009
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	1057, 1783, 1820, 2286
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	8 cut(s)	717, 1011, 1604, 1803, 1918, 2017, 2206, 2356
BstMAI	GTCTC	2 cut(s)	1898, 2171
BstMBI	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
BstMWI	GCNNNNNNNGC	5 cut(s)	488, 645, 1442, 1655, 2297
BstNI	CCWGG	2 cut(s)	203, 920
BstNSI	RCATGY	4 cut(s)	373, 1160, 1384, 1582
BstSCI	CCNGG	2 cut(s)	201, 918
BstSFI	CTRYAG	4 cut(s)	124, 1012, 1375, 2301
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	6 cut(s)	160, 998, 1408, 1667, 2287, 2305
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	2203
BstXI	CCANNNNNNTGG	1 cut(s)	1926
BstYI	RGATCY	1 cut(s)	2203
Bsu15I	ATCGAT	1 cut(s)	210
BsuI	GTATCC	2 cut(s)	356, 686
BsuRI	GGCC	2 cut(s)	2109, 2145
BsuTUI	ATCGAT	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	4 cut(s)	1057, 1783, 1820, 2286
BtsI	GCAGTG	1 cut(s)	2193
BtsIMutI	CAGTG	7 cut(s)	32, 103, 133, 982, 1290, 2193, 2387
BtuMI	TCGCGA	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	1993
Cac8I	GCNNGC	4 cut(s)	1382, 1809, 2248, 2252
CaiI	CAGNNNCTG	1 cut(s)	981
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	3 cut(s)	590, 955, 2308
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	1420
Csp6I	GTAC	5 cut(s)	186, 1429, 1688, 2025, 2385
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviQI	GTAC	5 cut(s)	186, 1429, 1688, 2025, 2385
DdeI	CTNAG	5 cut(s)	106, 856, 1385, 1693, 2009
DpnI	GATC	8 cut(s)	716, 1010, 1603, 1802, 1917, 2016, 2205, 2355
DpnII	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
DraI	TTTAAA	3 cut(s)	913, 970, 1069
DraIII	CACNNNGTG	1 cut(s)	821
DriI	GACNNNNNGTC	1 cut(s)	1988
Eam1104I	CTCTTC	5 cut(s)	421, 570, 1560, 1791, 2126
Eam1105I	GACNNNNNGTC	1 cut(s)	1988
EarI	CTCTTC	5 cut(s)	421, 570, 1560, 1791, 2126
Ecl136II	GAGCTC	1 cut(s)	748
Eco130I	CCWWGG	2 cut(s)	40, 248
Eco24I	GRGCYC	1 cut(s)	750
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	590, 955, 2308
Eco53kI	GAGCTC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	1584
EcoICRI	GAGCTC	1 cut(s)	748
EcoO109I	RGGNCCY	1 cut(s)	955
EcoRI	GAATTC	2 cut(s)	1608, 1704
EcoRII	CCWGG	2 cut(s)	201, 918
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	40, 248
EcoT22I	ATGCAT	4 cut(s)	457, 473, 1651, 1783
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	2 cut(s)	40, 248
FaqI	GGGAC	4 cut(s)	173, 403, 2321, 2346
FauI	CCCGC	2 cut(s)	149, 576
FauNDI	CATATG	5 cut(s)	519, 586, 1114, 1651, 1792
FblI	GTMKAC	3 cut(s)	123, 366, 2090
Fnu4HI	GCNGC	8 cut(s)	149, 289, 987, 1422, 1656, 2244, 2301, 2319
FokI	GGATG	4 cut(s)	1064, 1790, 1827, 2293
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	8 cut(s)	149, 289, 987, 1422, 1656, 2244, 2301, 2319
FspBI	CTAG	6 cut(s)	144, 386, 483, 1239, 2042, 2111
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	8 cut(s)	149, 289, 987, 1422, 1656, 2244, 2301, 2319
HaeIII	GGCC	2 cut(s)	2109, 2145
HapII	CCGG	3 cut(s)	832, 890, 1473
HgaI	GACGC	1 cut(s)	1420
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	1412
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	1121, 2269
HinfI	GANTC	9 cut(s)	137, 221, 720, 739, 938, 1523, 2081, 2087, 2378
HpaII	CCGG	3 cut(s)	832, 890, 1473
HphI	GGTGA	5 cut(s)	879, 1105, 1186, 1262, 2140
Hpy166II	GTNNAC	8 cut(s)	124, 367, 781, 1145, 1270, 1664, 2091, 2387
Hpy8I	GTNNAC	8 cut(s)	124, 367, 781, 1145, 1270, 1664, 2091, 2387
HpyCH4III	ACNGT	8 cut(s)	36, 98, 121, 128, 177, 983, 1136, 1668
HpyCH4IV	ACGT	2 cut(s)	904, 2335
HpyF10VI	GCNNNNNNNGC	5 cut(s)	488, 645, 1442, 1655, 2297
HpyF3I	CTNAG	5 cut(s)	106, 856, 1385, 1693, 2009
HpySE526I	ACGT	2 cut(s)	904, 2335
Hsp92I	GRCGYC	1 cut(s)	1412
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
LmnI	GCTCC	4 cut(s)	479, 496, 933, 1825
Lsp1109I	GCAGC	6 cut(s)	160, 998, 1408, 1667, 2287, 2305
LweI	GCATC	7 cut(s)	66, 205, 267, 458, 1766, 1768, 1805
MaeI	CTAG	6 cut(s)	144, 386, 483, 1239, 2042, 2111
MaeII	ACGT	2 cut(s)	904, 2335
MaeIII	GTNAC	8 cut(s)	767, 827, 977, 1093, 1253, 1615, 1967, 2191
MalI	GATC	8 cut(s)	716, 1010, 1603, 1802, 1917, 2016, 2205, 2355
MboI	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
MfeI	CAATTG	1 cut(s)	1769
MflI	RGATCY	1 cut(s)	2203
MhlI	GDGCHC	3 cut(s)	105, 750, 1857
MlyI	GAGTC	3 cut(s)	729, 947, 2096
MmeI	TCCRAC	2 cut(s)	487, 1755
Mph1103I	ATGCAT	4 cut(s)	457, 473, 1651, 1783
MslI	CAYNNNNRTG	4 cut(s)	620, 1577, 2161, 2187
MspA1I	CMGCKG	2 cut(s)	1421, 2246
MspCI	CTTAAG	2 cut(s)	1148, 2266
MspI	CCGG	3 cut(s)	832, 890, 1473
MspR9I	CCNGG	2 cut(s)	203, 920
MunI	CAATTG	1 cut(s)	1769
Mva1269I	GAATGC	2 cut(s)	79, 1029
MvaI	CCWGG	2 cut(s)	203, 920
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	5 cut(s)	488, 645, 1442, 1655, 2297
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	5 cut(s)	519, 586, 1114, 1651, 1792
NdeII	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
NlaIV	GGNNCC	4 cut(s)	929, 1372, 1827, 2309
NmeAIII	GCCGAG	2 cut(s)	674, 1319
NmuCI	GTSAC	5 cut(s)	827, 977, 1093, 1253, 2191
NruI	TCGCGA	1 cut(s)	306
NsiI	ATGCAT	4 cut(s)	457, 473, 1651, 1783
NspI	RCATGY	4 cut(s)	373, 1160, 1384, 1582
OliI	CACNNNNGTG	1 cut(s)	2187
PaeI	GCATGC	1 cut(s)	1384
PciI	ACATGT	2 cut(s)	369, 1578
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PctI	GAATGC	2 cut(s)	79, 1029
PfeI	GAWTC	6 cut(s)	137, 221, 739, 1523, 2081, 2378
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	8 cut(s)	150, 290, 988, 1423, 1657, 2245, 2302, 2320
PleI	GAGTC	3 cut(s)	728, 946, 2095
PpsI	GAGTC	3 cut(s)	728, 946, 2095
Ppu21I	YACGTR	1 cut(s)	905
PpuMI	RGGWCCY	1 cut(s)	955
PscI	ACATGT	2 cut(s)	369, 1578
PsiI	TTATAA	1 cut(s)	1841
Psp124BI	GAGCTC	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	955
Psp6I	CCWGG	2 cut(s)	201, 918
PspGI	CCWGG	2 cut(s)	201, 918
PspN4I	GGNNCC	4 cut(s)	929, 1372, 1827, 2309
PspPI	GGNCC	3 cut(s)	590, 955, 2308
PspPPI	RGGWCCY	1 cut(s)	955
PstI	CTGCAG	1 cut(s)	2305
PstNI	CAGNNNCTG	1 cut(s)	981
PsuI	RGATCY	1 cut(s)	2203
PvuII	CAGCTG	1 cut(s)	1421
RruI	TCGCGA	1 cut(s)	306
RsaI	GTAC	5 cut(s)	187, 1430, 1689, 2026, 2386
RsaNI	GTAC	5 cut(s)	186, 1429, 1688, 2025, 2385
RseI	CAYNNNNRTG	4 cut(s)	620, 1577, 2161, 2187
SacI	GAGCTC	1 cut(s)	750
SalI	GTCGAC	1 cut(s)	365
SatI	GCNGC	8 cut(s)	149, 289, 987, 1422, 1656, 2244, 2301, 2319
Sau3AI	GATC	8 cut(s)	714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
Sau96I	GGNCC	3 cut(s)	590, 955, 2308
SchI	GAGTC	3 cut(s)	729, 947, 2096
ScrFI	CCNGG	2 cut(s)	203, 920
SduI	GDGCHC	3 cut(s)	105, 750, 1857
SfaNI	GCATC	7 cut(s)	66, 205, 267, 458, 1766, 1768, 1805
SfcI	CTRYAG	4 cut(s)	124, 1012, 1375, 2301
SinI	GGWCC	3 cut(s)	590, 955, 2308
SmiMI	CAYNNNNRTG	4 cut(s)	620, 1577, 2161, 2187
SmlI	CTYRAG	7 cut(s)	1088, 1148, 1166, 1901, 1942, 2000, 2266
SmoI	CTYRAG	7 cut(s)	1088, 1148, 1166, 1901, 1942, 2000, 2266
SphI	GCATGC	1 cut(s)	1384
SsiI	CCGC	7 cut(s)	156, 180, 289, 569, 1043, 1140, 2244
SspMI	CTAG	6 cut(s)	144, 386, 483, 1239, 2042, 2111
SstI	GAGCTC	1 cut(s)	750
StyD4I	CCNGG	2 cut(s)	201, 918
StyI	CCWWGG	2 cut(s)	40, 248
TaaI	ACNGT	8 cut(s)	36, 98, 121, 128, 177, 983, 1136, 1668
TaiI	ACGT	2 cut(s)	907, 2338
TaqI	TCGA	7 cut(s)	140, 210, 366, 612, 1208, 1851, 2169
TaqII	GACCGA	2 cut(s)	2325, 2355
TatI	WGTACW	3 cut(s)	1428, 2024, 2384
TauI	GCSGC	2 cut(s)	291, 2246
TfiI	GAWTC	6 cut(s)	137, 221, 739, 1523, 2081, 2378
TscAI	CASTG	7 cut(s)	39, 103, 133, 982, 1290, 2200, 2394
TseFI	GTSAC	5 cut(s)	827, 977, 1093, 1253, 2191
TseI	GCWGC	6 cut(s)	148, 986, 1421, 1655, 2300, 2318
Tsp45I	GTSAC	5 cut(s)	827, 977, 1093, 1253, 2191
TspGWI	ACGGA	2 cut(s)	338, 582
TspRI	CASTG	7 cut(s)	39, 103, 133, 982, 1290, 2200, 2394
Vha464I	CTTAAG	2 cut(s)	1148, 2266
VpaK11BI	GGWCC	3 cut(s)	590, 955, 2308
XapI	RAATTY	9 cut(s)	537, 965, 1036, 1064, 1275, 1405, 1608, 1704, 2340
XbaI	TCTAGA	1 cut(s)	2041
XceI	RCATGY	4 cut(s)	373, 1160, 1384, 1582
XmiI	GTMKAC	3 cut(s)	123, 366, 2090
XspI	CTAG	6 cut(s)	144, 386, 483, 1239, 2042, 2111
Zsp2I	ATGCAT	4 cut(s)	457, 473, 1651, 1783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.