Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000365.1

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Reverse (-)

144915 .. 150700

Gene Structure 5786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000365.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtctgaacagggtttgacattttcgatggaggcattacactccattttacaagctagtagtgagagttgtgactttaatctggtactcttagacaagggaattccagtaaagagcttcaatgagattaaaagtgtgcttgtccaagcccttgcatcacatgggcaattgtctgatgcatttaatacatatgaagagatcaagcaagctggatgcagtttggagccgaaagctgttataagtcttatcgagcaccttcaatctgatgaagaagcattaagcagattactcctcctacttgagacactaaatgatccaaactattggcttgatggttgcttgagaactatcttgtattgtgttcgttacaagcatttaagacctgccgtcaatttgcttgagcaactcagggatcaggtctgtactgacgaattagctctagaagtaatttttgataaggtgttttccttcatagcagaatcggagtctacatctttagagtttggcctagatttgcttcatgctatgaagagtgagcttggcctcaccccttcacgaaaatgtctcgattttcttctccacgcttgtgtcactgccaaagatctgcaaagttccctatttgtatggcaagaatatcaagccgctggcttgccttacaataccttaagctttttaaggatgtatcaagcccttttggctgcaggggaccgaaaggctgcaaaagttttgggacgtaaaattcctaaagacgatcctcatgttcggtctatcattgaatcatgtacactgacttatttagagaagaaggaagaaaagaaaaagaaaaagaaaaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

279

Amino Acids

31.49

Weight (kDa)

6.02

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	488
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	3 cut(s)	308, 420, 746
AcsI	RAATTY	2 cut(s)	102, 738
AfaI	GTAC	3 cut(s)	87, 424, 784
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	3 cut(s)	121, 260, 776
AhdI	GACNNNNNGTC	1 cut(s)	386
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	7 cut(s)	56, 117, 209, 233, 437, 538, 669
AluI	AGCT	7 cut(s)	56, 117, 209, 233, 437, 538, 669
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	2 cut(s)	296, 569
AlwI	GGATC	3 cut(s)	308, 420, 746
AoxI	GGCC	2 cut(s)	505, 541
ApeKI	GCWGC	2 cut(s)	698, 716
ApoI	RAATTY	2 cut(s)	102, 738
AspS9I	GGNCC	1 cut(s)	706
AsuHPI	GGTGA	1 cut(s)	538
AvaII	GGWCC	1 cut(s)	706
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	685, 703
BccI	CCATC	2 cut(s)	22, 326
BceAI	ACGGC	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	296, 569
BfaI	CTAG	3 cut(s)	57, 440, 509
BfmI	CTRYAG	1 cut(s)	699
BfrI	CTTAAG	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	695
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	3 cut(s)	642, 699, 717
BlsI	GCNGC	3 cut(s)	643, 700, 718
Bme18I	GGWCC	1 cut(s)	706
BmeRI	GACNNNNNGTC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	2 cut(s)	225, 707
BmsI	GCATC	3 cut(s)	164, 166, 203
BpuEI	CTTGAG	3 cut(s)	320, 361, 419
Bse1I	ACTGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	218, 684
BseMII	CTCAG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	685, 703
BshFI	GGCC	2 cut(s)	507, 543
BsiHKAI	GWGCWC	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	719, 744
BsmAI	GTCTC	2 cut(s)	296, 569
BsmFI	GGGAC	2 cut(s)	719, 744
BsnI	GGCC	2 cut(s)	507, 543
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	782
Bsp143I	GATC	5 cut(s)	198, 313, 412, 601, 751
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	2 cut(s)	507, 543
BspCNI	CTCAG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	225, 707
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	3 cut(s)	308, 420, 746
BspTI	CTTAAG	1 cut(s)	664
BsrGI	TGTACA	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	107
BssMI	GATC	5 cut(s)	198, 313, 412, 601, 751
Bst6I	CTCTTC	2 cut(s)	189, 524
BstAFI	CTTAAG	1 cut(s)	664
BstAUI	TGTACA	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	207, 646, 650
BstDEI	CTNAG	2 cut(s)	91, 407
BstF5I	GGATG	2 cut(s)	218, 684
BstKTI	GATC	5 cut(s)	201, 316, 415, 604, 754
BstMAI	GTCTC	2 cut(s)	296, 569
BstMBI	GATC	5 cut(s)	198, 313, 412, 601, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	695
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	685, 703
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	507, 543
BtsCI	GGATG	2 cut(s)	218, 684
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	591, 785
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	207, 646, 650
Cfr13I	GGNCC	1 cut(s)	706
Csp6I	GTAC	3 cut(s)	86, 423, 783
CviAII	CATG	4 cut(s)	161, 521, 758, 780
CviQI	GTAC	3 cut(s)	86, 423, 783
DdeI	CTNAG	2 cut(s)	91, 407
DpnI	GATC	5 cut(s)	200, 315, 414, 603, 753
DpnII	GATC	5 cut(s)	198, 313, 412, 601, 751
DriI	GACNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	2 cut(s)	189, 524
Eam1105I	GACNNNNNGTC	1 cut(s)	386
EarI	CTCTTC	2 cut(s)	189, 524
Eco47I	GGWCC	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	4 cut(s)	164, 524, 761, 783
FaqI	GGGAC	2 cut(s)	719, 744
FatI	CATG	4 cut(s)	160, 520, 757, 779
FauNDI	CATATG	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	3 cut(s)	642, 699, 717
FokI	GGATG	2 cut(s)	225, 691
Fsp4HI	GCNGC	3 cut(s)	642, 699, 717
FspBI	CTAG	3 cut(s)	57, 440, 509
GluI	GCNGC	3 cut(s)	642, 699, 717
HaeIII	GGCC	2 cut(s)	507, 543
Hin1II	CATG	4 cut(s)	164, 524, 761, 783
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	3 cut(s)	479, 485, 776
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	2 cut(s)	489, 785
Hpy188I	TCNGA	4 cut(s)	7, 175, 265, 484
Hpy188III	TCNNGA	3 cut(s)	440, 555, 566
Hpy8I	GTNNAC	2 cut(s)	489, 785
HpyAV	CCTTC	4 cut(s)	266, 478, 561, 799
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	6 cut(s)	155, 179, 216, 607, 701, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	695
HpyF3I	CTNAG	2 cut(s)	91, 407
HpySE526I	ACGT	1 cut(s)	733
Hsp92II	CATG	4 cut(s)	164, 524, 761, 783
Kzo9I	GATC	5 cut(s)	198, 313, 412, 601, 751
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	8 cut(s)	68, 120, 195, 394, 396, 401, 630, 687
Lsp1109I	GCAGC	2 cut(s)	685, 703
LweI	GCATC	3 cut(s)	164, 166, 203
MaeI	CTAG	3 cut(s)	57, 440, 509
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	3 cut(s)	71, 365, 589
MalI	GATC	5 cut(s)	200, 315, 414, 603, 753
MboI	GATC	5 cut(s)	198, 313, 412, 601, 751
MboII	GAAGA	6 cut(s)	206, 281, 541, 566, 814, 821
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	6 cut(s)	102, 167, 391, 431, 447, 738
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	4 cut(s)	25, 302, 554, 765
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	7 cut(s)	78, 129, 183, 278, 377, 665, 674
MslI	CAYNNNNRTG	2 cut(s)	559, 585
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	664
MunI	CAATTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	695
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	5 cut(s)	198, 313, 412, 601, 751
NlaIII	CATG	4 cut(s)	164, 524, 761, 783
NlaIV	GGNNCC	2 cut(s)	225, 707
NmuCI	GTSAC	2 cut(s)	71, 589
NsiI	ATGCAT	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	479, 776
PkrI	GCNGC	3 cut(s)	643, 700, 718
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PsiI	TTATAA	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	225, 707
PspPI	GGNCC	1 cut(s)	706
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	3 cut(s)	87, 424, 784
RsaNI	GTAC	3 cut(s)	86, 423, 783
RseI	CAYNNNNRTG	2 cut(s)	559, 585
SaqAI	TTAA	7 cut(s)	78, 129, 183, 278, 377, 665, 674
SatI	GCNGC	3 cut(s)	642, 699, 717
Sau3AI	GATC	5 cut(s)	198, 313, 412, 601, 751
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	3 cut(s)	164, 166, 203
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	2 cut(s)	559, 585
SmlI	CTYRAG	4 cut(s)	299, 340, 398, 664
SmoI	CTYRAG	4 cut(s)	299, 340, 398, 664
Sse9I	AATT	6 cut(s)	102, 167, 391, 431, 447, 738
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	3 cut(s)	57, 440, 509
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	3 cut(s)	26, 249, 567
TaqII	GACCGA	2 cut(s)	723, 753
TasI	AATT	6 cut(s)	102, 167, 391, 431, 447, 738
TatI	WGTACW	2 cut(s)	422, 782
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	2 cut(s)	479, 776
Tru1I	TTAA	7 cut(s)	78, 129, 183, 278, 377, 665, 674
Tru9I	TTAA	7 cut(s)	78, 129, 183, 278, 377, 665, 674
TscAI	CASTG	2 cut(s)	598, 792
TseFI	GTSAC	2 cut(s)	71, 589
TseI	GCWGC	2 cut(s)	698, 716
Tsp45I	GTSAC	2 cut(s)	71, 589
TspDTI	ATGAA	5 cut(s)	207, 282, 460, 509, 542
TspRI	CASTG	2 cut(s)	598, 792
Vha464I	CTTAAG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	706
XapI	RAATTY	2 cut(s)	102, 738
XbaI	TCTAGA	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	488
XspI	CTAG	3 cut(s)	57, 440, 509
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.