Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 368 - 531 | 3.9e-13 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 442 - 557 | 2.6e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 457 - 515 | 2.7e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 468 - 515 | 2.2e-10 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1829 |
| Acc36I | ACCTGC | 1 cut(s) | 1981 |
| AccB1I | GGYRCC | 1 cut(s) | 1358 |
| AccI | GTMKAC | 3 cut(s) | 354, 1119, 2078 |
| AccII | CGCG | 1 cut(s) | 294 |
| AciI | CCGC | 6 cut(s) | 63, 84, 168, 277, 557, 1031 |
| AclWI | GGATC | 4 cut(s) | 710, 1898, 2010, 2336 |
| AcuI | CTGAAG | 1 cut(s) | 1572 |
| AcyI | GRCGYC | 2 cut(s) | 93, 1400 |
| AdeI | CACNNNGTG | 2 cut(s) | 809, 1901 |
| AfaI | GTAC | 5 cut(s) | 175, 1418, 1677, 2014, 2374 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 826 |
| AflII | CTTAAG | 2 cut(s) | 1136, 2254 |
| AflIII | ACRYGT | 2 cut(s) | 357, 1566 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1976 |
| AjnI | CCWGG | 3 cut(s) | 142, 189, 906 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1601, 1633 |
| AleI | CACNNNNGTG | 1 cut(s) | 2175 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 537, 569 |
| Alw21I | GWGCWC | 2 cut(s) | 738, 1845 |
| Alw26I | GTCTC | 3 cut(s) | 115, 1886, 2159 |
| AlwI | GGATC | 4 cut(s) | 710, 1898, 2010, 2336 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 969 |
| AoxI | GGCC | 2 cut(s) | 2095, 2131 |
| ApeKI | GCWGC | 7 cut(s) | 136, 974, 1409, 1643, 2231, 2288, 2306 |
| AspLEI | GCGC | 1 cut(s) | 276 |
| AspS9I | GGNCC | 3 cut(s) | 578, 943, 2296 |
| AsuHPI | GGTGA | 5 cut(s) | 72, 867, 1093, 1250, 2128 |
| AvaII | GGWCC | 3 cut(s) | 578, 943, 2296 |
| BanI | GGYRCC | 1 cut(s) | 1358 |
| BanII | GRGCYC | 1 cut(s) | 738 |
| Bbv12I | GWGCWC | 2 cut(s) | 738, 1845 |
| BbvI | GCAGC | 7 cut(s) | 148, 986, 1396, 1655, 2218, 2275, 2293 |
| BccI | CCATC | 5 cut(s) | 47, 755, 1192, 1536, 1916 |
| BceAI | ACGGC | 1 cut(s) | 1961 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 253, 287, 344, 378 |
| BciT130I | CCWGG | 3 cut(s) | 144, 191, 908 |
| BciVI | GTATCC | 2 cut(s) | 344, 674 |
| BcoDI | GTCTC | 3 cut(s) | 115, 1886, 2159 |
| BfaI | CTAG | 6 cut(s) | 132, 374, 471, 1227, 2030, 2099 |
| BfmI | CTRYAG | 3 cut(s) | 1000, 1363, 2289 |
| BfrI | CTTAAG | 2 cut(s) | 1136, 2254 |
| BfuAI | ACCTGC | 1 cut(s) | 1981 |
| BfuI | GTATCC | 2 cut(s) | 344, 674 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2285 |
| BisI | GCNGC | 8 cut(s) | 137, 277, 975, 1410, 1644, 2232, 2289, 2307 |
| BlpI | GCTNAGC | 1 cut(s) | 17 |
| BlsI | GCNGC | 8 cut(s) | 138, 278, 976, 1411, 1645, 2233, 2290, 2308 |
| Bme1390I | CCNGG | 3 cut(s) | 144, 191, 908 |
| Bme18I | GGWCC | 3 cut(s) | 578, 943, 2296 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1976 |
| BmgT120I | GGNCC | 3 cut(s) | 578, 943, 2296 |
| BmiI | GGNNCC | 4 cut(s) | 917, 1360, 1815, 2297 |
| BmrFI | CCNGG | 3 cut(s) | 144, 191, 908 |
| BmsI | GCATC | 6 cut(s) | 193, 255, 446, 1754, 1756, 1793 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 17 |
| BpuEI | CTTGAG | 4 cut(s) | 1097, 1175, 1910, 2009 |
| Bsa29I | ATCGAT | 1 cut(s) | 198 |
| BsaAI | YACGTR | 1 cut(s) | 893 |
| BsaHI | GRCGYC | 2 cut(s) | 93, 1400 |
| BsaJI | CCNNGG | 6 cut(s) | 87, 142, 143, 236, 907, 1282 |
| BsaWI | WCCGGW | 3 cut(s) | 819, 877, 1460 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 38, 68 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 826 |
| Bse1I | ACTGG | 2 cut(s) | 963, 1697 |
| BseBI | CCWGG | 3 cut(s) | 144, 191, 908 |
| BseCI | ATCGAT | 1 cut(s) | 198 |
| BseDI | CCNNGG | 6 cut(s) | 87, 142, 143, 236, 907, 1282 |
| BseGI | GGATG | 4 cut(s) | 1045, 1171, 1808, 2274 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 826 |
| BseMII | CTCAG | 3 cut(s) | 341, 1364, 2011 |
| BseNI | ACTGG | 2 cut(s) | 963, 1697 |
| BseRI | GAGGAG | 3 cut(s) | 46, 49, 1871 |
| BseXI | GCAGC | 7 cut(s) | 148, 986, 1396, 1655, 2218, 2275, 2293 |
| BsgI | GTGCAG | 1 cut(s) | 993 |
| Bsh1236I | CGCG | 1 cut(s) | 294 |
| BshFI | GGCC | 2 cut(s) | 2097, 2133 |
| BshNI | GGYRCC | 1 cut(s) | 1358 |
| BshVI | ATCGAT | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 2 cut(s) | 738, 1845 |
| BsiSI | CCGG | 3 cut(s) | 820, 878, 1461 |
| BslFI | GGGAC | 4 cut(s) | 161, 391, 2309, 2334 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 826 |
| BsmAI | GTCTC | 3 cut(s) | 115, 1886, 2159 |
| BsmBI | CGTCTC | 1 cut(s) | 115 |
| BsmFI | GGGAC | 4 cut(s) | 161, 391, 2309, 2334 |
| BsmI | GAATGC | 2 cut(s) | 10, 1017 |
| BsnI | GGCC | 2 cut(s) | 2097, 2133 |
| Bsp1286I | GDGCHC | 2 cut(s) | 738, 1845 |
| Bsp1407I | TGTACA | 2 cut(s) | 1416, 2372 |
| Bsp143I | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 17 |
| Bsp19I | CCATGG | 1 cut(s) | 236 |
| Bsp68I | TCGCGA | 1 cut(s) | 294 |
| BspACI | CCGC | 6 cut(s) | 63, 84, 168, 277, 557, 1031 |
| BspANI | GGCC | 2 cut(s) | 2097, 2133 |
| BspCNI | CTCAG | 3 cut(s) | 340, 1365, 2010 |
| BspDI | ATCGAT | 1 cut(s) | 198 |
| BspFNI | CGCG | 1 cut(s) | 294 |
| BspLI | GGNNCC | 4 cut(s) | 917, 1360, 1815, 2297 |
| BspMAI | CTGCAG | 1 cut(s) | 2293 |
| BspMI | ACCTGC | 1 cut(s) | 1981 |
| BspPI | GGATC | 4 cut(s) | 710, 1898, 2010, 2336 |
| BspT107I | GGYRCC | 1 cut(s) | 1358 |
| BspTI | CTTAAG | 2 cut(s) | 1136, 2254 |
| BsrGI | TGTACA | 2 cut(s) | 1416, 2372 |
| BsrI | ACTGG | 2 cut(s) | 963, 1697 |
| BssECI | CCNNGG | 6 cut(s) | 87, 142, 143, 236, 907, 1282 |
| BssMI | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| BssNI | GRCGYC | 2 cut(s) | 93, 1400 |
| BssT1I | CCWWGG | 1 cut(s) | 236 |
| Bst2UI | CCWGG | 3 cut(s) | 144, 191, 908 |
| Bst4CI | ACNGT | 4 cut(s) | 165, 971, 1124, 1656 |
| Bst6I | CTCTTC | 6 cut(s) | 409, 558, 1548, 1779, 2114, 2394 |
| BstACI | GRCGYC | 2 cut(s) | 93, 1400 |
| BstAFI | CTTAAG | 2 cut(s) | 1136, 2254 |
| BstAUI | TGTACA | 2 cut(s) | 1416, 2372 |
| BstBAI | YACGTR | 1 cut(s) | 893 |
| BstC8I | GCNNGC | 4 cut(s) | 1370, 1797, 2236, 2240 |
| BstDEI | CTNAG | 6 cut(s) | 17, 327, 1373, 1681, 1898, 1997 |
| BstDSI | CCRYGG | 1 cut(s) | 236 |
| BstF5I | GGATG | 4 cut(s) | 1045, 1171, 1808, 2274 |
| BstFNI | CGCG | 1 cut(s) | 294 |
| BstHHI | GCGC | 1 cut(s) | 276 |
| BstKTI | GATC | 7 cut(s) | 705, 999, 1592, 1791, 1906, 2005, 2344 |
| BstMAI | GTCTC | 3 cut(s) | 115, 1886, 2159 |
| BstMBI | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 92, 476, 633, 1430, 1643, 2285 |
| BstNI | CCWGG | 3 cut(s) | 144, 191, 908 |
| BstNSI | RCATGY | 4 cut(s) | 361, 1148, 1372, 1570 |
| BstSCI | CCNGG | 3 cut(s) | 142, 189, 906 |
| BstSFI | CTRYAG | 3 cut(s) | 1000, 1363, 2289 |
| BstUI | CGCG | 1 cut(s) | 294 |
| BstV1I | GCAGC | 7 cut(s) | 148, 986, 1396, 1655, 2218, 2275, 2293 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1914 |
| Bsu15I | ATCGAT | 1 cut(s) | 198 |
| BsuI | GTATCC | 2 cut(s) | 344, 674 |
| BsuRI | GGCC | 2 cut(s) | 2097, 2133 |
| BsuTUI | ATCGAT | 1 cut(s) | 198 |
| BtgI | CCRYGG | 1 cut(s) | 236 |
| BtgZI | GCGATG | 1 cut(s) | 278 |
| BtsCI | GGATG | 4 cut(s) | 1045, 1171, 1808, 2274 |
| BtsIMutI | CAGTG | 2 cut(s) | 970, 1278 |
| BtuMI | TCGCGA | 1 cut(s) | 294 |
| BveI | ACCTGC | 1 cut(s) | 1981 |
| Cac8I | GCNNGC | 4 cut(s) | 1370, 1797, 2236, 2240 |
| CaiI | CAGNNNCTG | 1 cut(s) | 969 |
| CfoI | GCGC | 1 cut(s) | 276 |
| Cfr13I | GGNCC | 3 cut(s) | 578, 943, 2296 |
| ClaI | ATCGAT | 1 cut(s) | 198 |
| CseI | GACGC | 2 cut(s) | 101, 1408 |
| Csp6I | GTAC | 5 cut(s) | 174, 1417, 1676, 2013, 2373 |
| CviQI | GTAC | 5 cut(s) | 174, 1417, 1676, 2013, 2373 |
| DdeI | CTNAG | 6 cut(s) | 17, 327, 1373, 1681, 1898, 1997 |
| DpnI | GATC | 7 cut(s) | 704, 998, 1591, 1790, 1905, 2004, 2343 |
| DpnII | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| DraI | TTTAAA | 3 cut(s) | 901, 958, 1057 |
| DraIII | CACNNNGTG | 2 cut(s) | 809, 1901 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1976 |
| Eam1104I | CTCTTC | 6 cut(s) | 409, 558, 1548, 1779, 2114, 2394 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1976 |
| EarI | CTCTTC | 6 cut(s) | 409, 558, 1548, 1779, 2114, 2394 |
| EciI | GGCGGA | 1 cut(s) | 52 |
| Ecl136II | GAGCTC | 1 cut(s) | 736 |
| Eco130I | CCWWGG | 1 cut(s) | 236 |
| Eco24I | GRGCYC | 1 cut(s) | 738 |
| Eco32I | GATATC | 1 cut(s) | 187 |
| Eco47I | GGWCC | 3 cut(s) | 578, 943, 2296 |
| Eco53kI | GAGCTC | 1 cut(s) | 736 |
| Eco57I | CTGAAG | 1 cut(s) | 1572 |
| EcoICRI | GAGCTC | 1 cut(s) | 736 |
| EcoO109I | RGGNCCY | 1 cut(s) | 943 |
| EcoRI | GAATTC | 2 cut(s) | 1596, 1692 |
| EcoRII | CCWGG | 3 cut(s) | 142, 189, 906 |
| EcoRV | GATATC | 1 cut(s) | 187 |
| EcoT14I | CCWWGG | 1 cut(s) | 236 |
| EcoT22I | ATGCAT | 4 cut(s) | 445, 461, 1639, 1771 |
| EcoT38I | GRGCYC | 1 cut(s) | 738 |
| ErhI | CCWWGG | 1 cut(s) | 236 |
| Esp3I | CGTCTC | 1 cut(s) | 115 |
| FaqI | GGGAC | 4 cut(s) | 161, 391, 2309, 2334 |
| FauI | CCCGC | 2 cut(s) | 91, 564 |
| FauNDI | CATATG | 5 cut(s) | 507, 574, 1102, 1639, 1780 |
| FblI | GTMKAC | 3 cut(s) | 354, 1119, 2078 |
| Fnu4HI | GCNGC | 8 cut(s) | 137, 277, 975, 1410, 1644, 2232, 2289, 2307 |
| FokI | GGATG | 4 cut(s) | 1052, 1178, 1815, 2281 |
| FriOI | GRGCYC | 1 cut(s) | 738 |
| Fsp4HI | GCNGC | 8 cut(s) | 137, 277, 975, 1410, 1644, 2232, 2289, 2307 |
| FspBI | CTAG | 6 cut(s) | 132, 374, 471, 1227, 2030, 2099 |
| GlaI | GCGC | 1 cut(s) | 275 |
| GluI | GCNGC | 8 cut(s) | 137, 277, 975, 1410, 1644, 2232, 2289, 2307 |
| HaeIII | GGCC | 2 cut(s) | 2097, 2133 |
| HapII | CCGG | 3 cut(s) | 820, 878, 1461 |
| HgaI | GACGC | 2 cut(s) | 101, 1408 |
| HhaI | GCGC | 1 cut(s) | 276 |
| Hin1I | GRCGYC | 2 cut(s) | 93, 1400 |
| Hin6I | GCGC | 1 cut(s) | 274 |
| HinP1I | GCGC | 1 cut(s) | 274 |
| HincII | GTYRAC | 1 cut(s) | 355 |
| HindII | GTYRAC | 1 cut(s) | 355 |
| HindIII | AAGCTT | 2 cut(s) | 1109, 2257 |
| HpaII | CCGG | 3 cut(s) | 820, 878, 1461 |
| HphI | GGTGA | 5 cut(s) | 72, 867, 1093, 1250, 2128 |
| Hpy166II | GTNNAC | 7 cut(s) | 355, 769, 1120, 1258, 1652, 2079, 2375 |
| Hpy188I | TCNGA | 8 cut(s) | 121, 707, 1177, 1445, 1552, 1765, 1855, 2074 |
| Hpy8I | GTNNAC | 7 cut(s) | 355, 769, 1120, 1258, 1652, 2079, 2375 |
| HpyCH4III | ACNGT | 4 cut(s) | 165, 971, 1124, 1656 |
| HpyCH4IV | ACGT | 2 cut(s) | 892, 2323 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 92, 476, 633, 1430, 1643, 2285 |
| HpyF3I | CTNAG | 6 cut(s) | 17, 327, 1373, 1681, 1898, 1997 |
| HpySE526I | ACGT | 2 cut(s) | 892, 2323 |
| Hsp92I | GRCGYC | 2 cut(s) | 93, 1400 |
| HspAI | GCGC | 1 cut(s) | 274 |
| Kzo9I | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| LmnI | GCTCC | 4 cut(s) | 144, 484, 921, 1813 |
| Lsp1109I | GCAGC | 7 cut(s) | 148, 986, 1396, 1655, 2218, 2275, 2293 |
| LweI | GCATC | 6 cut(s) | 193, 255, 446, 1754, 1756, 1793 |
| MaeI | CTAG | 6 cut(s) | 132, 374, 471, 1227, 2030, 2099 |
| MaeII | ACGT | 2 cut(s) | 892, 2323 |
| MaeIII | GTNAC | 8 cut(s) | 72, 815, 965, 1081, 1241, 1603, 1955, 2179 |
| MalI | GATC | 7 cut(s) | 704, 998, 1591, 1790, 1905, 2004, 2343 |
| MboI | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| MfeI | CAATTG | 1 cut(s) | 1757 |
| MhlI | GDGCHC | 2 cut(s) | 738, 1845 |
| MlyI | GAGTC | 3 cut(s) | 717, 935, 2084 |
| MmeI | TCCRAC | 1 cut(s) | 475 |
| Mph1103I | ATGCAT | 4 cut(s) | 445, 461, 1639, 1771 |
| MslI | CAYNNNNRTG | 4 cut(s) | 608, 1565, 2149, 2175 |
| MspA1I | CMGCKG | 1 cut(s) | 1409 |
| MspCI | CTTAAG | 2 cut(s) | 1136, 2254 |
| MspI | CCGG | 3 cut(s) | 820, 878, 1461 |
| MspR9I | CCNGG | 3 cut(s) | 144, 191, 908 |
| MunI | CAATTG | 1 cut(s) | 1757 |
| Mva1269I | GAATGC | 2 cut(s) | 10, 1017 |
| MvaI | CCWGG | 3 cut(s) | 144, 191, 908 |
| MvnI | CGCG | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 92, 476, 633, 1430, 1643, 2285 |
| NcoI | CCATGG | 1 cut(s) | 236 |
| NdeI | CATATG | 5 cut(s) | 507, 574, 1102, 1639, 1780 |
| NdeII | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| NlaIV | GGNNCC | 4 cut(s) | 917, 1360, 1815, 2297 |
| NmeAIII | GCCGAG | 3 cut(s) | 112, 662, 1307 |
| NmuCI | GTSAC | 4 cut(s) | 815, 965, 1081, 1241 |
| NruI | TCGCGA | 1 cut(s) | 294 |
| NsiI | ATGCAT | 4 cut(s) | 445, 461, 1639, 1771 |
| NspI | RCATGY | 4 cut(s) | 361, 1148, 1372, 1570 |
| OliI | CACNNNNGTG | 1 cut(s) | 2175 |
| PaeI | GCATGC | 1 cut(s) | 1372 |
| PasI | CCCWGGG | 1 cut(s) | 143 |
| PciI | ACATGT | 2 cut(s) | 357, 1566 |
| PctI | GAATGC | 2 cut(s) | 10, 1017 |
| PfeI | GAWTC | 7 cut(s) | 125, 209, 727, 1130, 1511, 2069, 2366 |
| PfoI | TCCNGGA | 1 cut(s) | 189 |
| PkrI | GCNGC | 8 cut(s) | 138, 278, 976, 1411, 1645, 2233, 2290, 2308 |
| PleI | GAGTC | 3 cut(s) | 716, 934, 2083 |
| PpsI | GAGTC | 3 cut(s) | 716, 934, 2083 |
| Ppu21I | YACGTR | 1 cut(s) | 893 |
| PpuMI | RGGWCCY | 1 cut(s) | 943 |
| PscI | ACATGT | 2 cut(s) | 357, 1566 |
| PsiI | TTATAA | 1 cut(s) | 1829 |
| Psp124BI | GAGCTC | 1 cut(s) | 738 |
| Psp5II | RGGWCCY | 1 cut(s) | 943 |
| Psp6I | CCWGG | 3 cut(s) | 142, 189, 906 |
| PspGI | CCWGG | 3 cut(s) | 142, 189, 906 |
| PspN4I | GGNNCC | 4 cut(s) | 917, 1360, 1815, 2297 |
| PspPI | GGNCC | 3 cut(s) | 578, 943, 2296 |
| PspPPI | RGGWCCY | 1 cut(s) | 943 |
| PstI | CTGCAG | 1 cut(s) | 2293 |
| PstNI | CAGNNNCTG | 1 cut(s) | 969 |
| PvuII | CAGCTG | 1 cut(s) | 1409 |
| RruI | TCGCGA | 1 cut(s) | 294 |
| RsaI | GTAC | 5 cut(s) | 175, 1418, 1677, 2014, 2374 |
| RsaNI | GTAC | 5 cut(s) | 174, 1417, 1676, 2013, 2373 |
| RseI | CAYNNNNRTG | 4 cut(s) | 608, 1565, 2149, 2175 |
| SacI | GAGCTC | 1 cut(s) | 738 |
| SalI | GTCGAC | 1 cut(s) | 353 |
| SatI | GCNGC | 8 cut(s) | 137, 277, 975, 1410, 1644, 2232, 2289, 2307 |
| Sau3AI | GATC | 7 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2341 |
| Sau96I | GGNCC | 3 cut(s) | 578, 943, 2296 |
| SchI | GAGTC | 3 cut(s) | 717, 935, 2084 |
| ScrFI | CCNGG | 3 cut(s) | 144, 191, 908 |
| SduI | GDGCHC | 2 cut(s) | 738, 1845 |
| SfaNI | GCATC | 6 cut(s) | 193, 255, 446, 1754, 1756, 1793 |
| SfcI | CTRYAG | 3 cut(s) | 1000, 1363, 2289 |
| SinI | GGWCC | 3 cut(s) | 578, 943, 2296 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 608, 1565, 2149, 2175 |
| SmlI | CTYRAG | 6 cut(s) | 1076, 1136, 1154, 1889, 1988, 2254 |
| SmoI | CTYRAG | 6 cut(s) | 1076, 1136, 1154, 1889, 1988, 2254 |
| SphI | GCATGC | 1 cut(s) | 1372 |
| SsiI | CCGC | 6 cut(s) | 63, 84, 168, 277, 557, 1031 |
| SspMI | CTAG | 6 cut(s) | 132, 374, 471, 1227, 2030, 2099 |
| SstI | GAGCTC | 1 cut(s) | 738 |
| StyD4I | CCNGG | 3 cut(s) | 142, 189, 906 |
| StyI | CCWWGG | 1 cut(s) | 236 |
| TaaI | ACNGT | 4 cut(s) | 165, 971, 1124, 1656 |
| TaiI | ACGT | 2 cut(s) | 895, 2326 |
| TaqI | TCGA | 6 cut(s) | 128, 198, 354, 1196, 1839, 2157 |
| TaqII | GACCGA | 2 cut(s) | 2313, 2343 |
| TatI | WGTACW | 3 cut(s) | 1416, 2012, 2372 |
| TauI | GCSGC | 1 cut(s) | 279 |
| TfiI | GAWTC | 7 cut(s) | 125, 209, 727, 1130, 1511, 2069, 2366 |
| TscAI | CASTG | 2 cut(s) | 970, 1278 |
| TseFI | GTSAC | 4 cut(s) | 815, 965, 1081, 1241 |
| TseI | GCWGC | 7 cut(s) | 136, 974, 1409, 1643, 2231, 2288, 2306 |
| Tsp45I | GTSAC | 4 cut(s) | 815, 965, 1081, 1241 |
| TspGWI | ACGGA | 2 cut(s) | 326, 570 |
| TspRI | CASTG | 2 cut(s) | 970, 1278 |
| Vha464I | CTTAAG | 2 cut(s) | 1136, 2254 |
| VpaK11BI | GGWCC | 3 cut(s) | 578, 943, 2296 |
| XbaI | TCTAGA | 1 cut(s) | 2029 |
| XceI | RCATGY | 4 cut(s) | 361, 1148, 1372, 1570 |
| XmiI | GTMKAC | 3 cut(s) | 354, 1119, 2078 |
| XspI | CTAG | 6 cut(s) | 132, 374, 471, 1227, 2030, 2099 |
| Zsp2I | ATGCAT | 4 cut(s) | 445, 461, 1639, 1771 |