RchiOBHm_Chr5g0037541

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000531
Physical Location & Seq
Forward (+)
32120224 .. 32127026
6803 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31624

Sequence Viewer

Length: 1473 bp
ATGAAAGCCAAGAAGCTAAGCTCTCTCTTTCGCTCTGCCATCAAATACAAACCCTCCTCCTCCTCTTCCTCCGCCAAATCGCTACCCTCACCCGCCGAGGACGCCACTCTCAAATTCGTTTCTGCTTCCGAAGATTCGACTAGGCAGCTCCCTGGGGACATTTATTCAATACTGTGCGGTGGTACTTACCCTGATATCCAGGAAATCGATGATGCAGAATCTTTGGAGAGGGAATTGGACTTACCATGGTTTCCAGATTTATCCCATAGTGCGATGCCATTGCGCCGCAAAGAAGTTAGTCGCGAAAGGAAGCAGAGGTTTGCTTTCGGCAACACTCAGGGTATCCGTTTTGATAAGTTAGTCGACATGTGTGCCAACAGGCTAGGGACTGAAACCACTATTCAAGTGTTTGACAAATTGGGAAGAGAAACGGGTGTGAAAGAATGTAATGCATTGATAAAGAGATGCATAGAGGGGGCTAGGATTGCTCCTGATGAAGTAGTTGGAGAAAAGCATATGCAGTTGGCTTTCGAAATTTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAACATATGGTCCGTTTCTTGAATATCTTATTGACATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACGAAGGAGATTTTGAAGCTGTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTTTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCAGTGGAAAAGATGAATCCGCAGAAGTGTTGTTGACTTGCTGTGTAGTTGAGGATGTCATTTCAAAATTTAAAAACTTGCACACAAAACTTGAGGTGACACCTTCATCTGTGTCATATGAGAAGCTTATCATCTACTGTTGTGATTCACTTAAGGTGCATGTGGCTCTTGAGCTGGTGGATGAGATGTCTGAACAGGGTTTGACATTTTCGATGGAGGCATTACACTCCATTTTACAAGCTAGTAGTGAGAGTTGTGACTTTAATCTGGTTCACCAAATTTATTCAGTGATTAGCCGAGGCAATTTGAAGCCCAATAGCGAAACTTTCAGGAGTATGATAAATCTTTGTGTGAAAATGAAGGATGTAAGTCTTTCTTCCTTGTTGCCGTTTGCCAAATATATATGTCTTGACAATCTTGTAATATGGAAGTTGAACAGTACCATACCGCAACTTGTCATATTTCCTTTTCACTGCAGTATGAGGGTGCCTATAGCATGCTGA

Protein Analysis

490

Amino Acids

55.61

Weight (kDa)

5.4

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica MD03G1211600.v1.1
prunus_persica Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis pycom03g16030
rosa_chinensis RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa Rorug05G0165400
rosa_samantha Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1456
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 303
AciI CCGC 7 cut(s) 72, 93, 177, 286, 566, 990, 1418
AclWI GGATC 1 cut(s) 719
AcsI RAATTY 5 cut(s) 113, 534, 962, 1037, 1248
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 818
AfaI GTAC 2 cut(s) 184, 1411
AfiI CCNNNNNNNGG 1 cut(s) 835
AflII CTTAAG 1 cut(s) 1121
AflIII ACRYGT 1 cut(s) 366
AjnI CCWGG 3 cut(s) 151, 198, 915
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 8 cut(s) 16, 21, 148, 745, 850, 1096, 1144, 1211
AluI AGCT 8 cut(s) 16, 21, 148, 745, 850, 1096, 1144, 1211
Alw21I GWGCWC 1 cut(s) 747
AlwI GGATC 1 cut(s) 719
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 5 cut(s) 113, 534, 962, 1037, 1248
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 587, 952
AsuHPI GGTGA 4 cut(s) 81, 876, 1078, 1235
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 2 cut(s) 587, 952
BanI GGYRCC 1 cut(s) 1456
BanII GRGCYC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 1 cut(s) 157
BccI CCATC 3 cut(s) 47, 764, 1177
BceAI ACGGC 1 cut(s) 1342
BcgI CGANNNNNNTGC 4 cut(s) 262, 296, 353, 387
BciT130I CCWGG 3 cut(s) 153, 200, 917
BciVI GTATCC 2 cut(s) 353, 683
BfaI CTAG 4 cut(s) 141, 383, 480, 1212
BfmI CTRYAG 2 cut(s) 1444, 1461
BfrI CTTAAG 1 cut(s) 1121
BfuI GTATCC 2 cut(s) 353, 683
BisI GCNGC 2 cut(s) 146, 286
BlpI GCTNAGC 1 cut(s) 17
BlsI GCNGC 2 cut(s) 147, 287
Bme1390I CCNGG 3 cut(s) 153, 200, 917
Bme18I GGWCC 2 cut(s) 587, 952
BmgT120I GGNCC 2 cut(s) 587, 952
BmiI GGNNCC 2 cut(s) 926, 1458
BmrFI CCNGG 3 cut(s) 153, 200, 917
BmsI GCATC 3 cut(s) 202, 264, 455
Bpu1102I GCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 1082, 1160
Bsa29I ATCGAT 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 902
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 6 cut(s) 96, 151, 152, 245, 916, 1267
BsaWI WCCGGW 2 cut(s) 828, 886
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 1 cut(s) 972
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 3 cut(s) 153, 200, 917
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 6 cut(s) 96, 151, 152, 245, 916, 1267
BseGI GGATG 3 cut(s) 1030, 1156, 1339
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 972
BseRI GAGGAG 3 cut(s) 46, 49, 52
BseXI GCAGC 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 1456
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 2 cut(s) 829, 887
BslFI GGGAC 2 cut(s) 170, 400
BslI CCNNNNNNNGG 1 cut(s) 835
BsmFI GGGAC 2 cut(s) 170, 400
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 1 cut(s) 711
Bsp1720I GCTNAGC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 245
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 7 cut(s) 72, 93, 177, 286, 566, 990, 1418
BspCNI CTCAG 1 cut(s) 349
BspDI ATCGAT 1 cut(s) 207
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 926, 1458
BspMAI CTGCAG 1 cut(s) 1448
BspPI GGATC 1 cut(s) 719
BspT104I TTCGAA 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 1456
BspTI CTTAAG 1 cut(s) 1121
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 972
BssECI CCNNGG 6 cut(s) 96, 151, 152, 245, 916, 1267
BssMI GATC 1 cut(s) 711
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 3 cut(s) 153, 200, 917
Bst4CI ACNGT 3 cut(s) 174, 1109, 1409
Bst6I CTCTTC 3 cut(s) 70, 418, 567
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 1121
BstBAI YACGTR 1 cut(s) 902
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 1468
BstDEI CTNAG 2 cut(s) 17, 336
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 1030, 1156, 1339
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 1 cut(s) 714
BstMBI GATC 1 cut(s) 711
BstMWI GCNNNNNNNGC 3 cut(s) 101, 485, 642
BstNI CCWGG 3 cut(s) 153, 200, 917
BstNSI RCATGY 3 cut(s) 370, 1133, 1470
BstSCI CCNGG 3 cut(s) 151, 198, 915
BstSFI CTRYAG 2 cut(s) 1444, 1461
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 207
BsuI GTATCC 2 cut(s) 353, 683
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 287
BtsCI GGATG 3 cut(s) 1030, 1156, 1339
BtsI GCAGTG 1 cut(s) 1441
BtsIMutI CAGTG 3 cut(s) 979, 1263, 1441
BtuMI TCGCGA 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 1468
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 587, 952
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 183, 1410
CviAII CATG 5 cut(s) 246, 367, 613, 1130, 1467
CviQI GTAC 2 cut(s) 183, 1410
DdeI CTNAG 2 cut(s) 17, 336
DpnI GATC 1 cut(s) 713
DpnII GATC 1 cut(s) 711
DraI TTTAAA 3 cut(s) 910, 967, 1042
DraIII CACNNNGTG 1 cut(s) 818
Eam1104I CTCTTC 3 cut(s) 70, 418, 567
EarI CTCTTC 3 cut(s) 70, 418, 567
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 747
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 587, 952
Eco53kI GAGCTC 1 cut(s) 745
EcoICRI GAGCTC 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 952
EcoRII CCWGG 3 cut(s) 151, 198, 915
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 245
EcoT22I ATGCAT 2 cut(s) 454, 470
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 5 cut(s) 249, 370, 616, 1133, 1470
FalI AAGNNNNNCTT 2 cut(s) 1330, 1362
FaqI GGGAC 2 cut(s) 170, 400
FatI CATG 5 cut(s) 245, 366, 612, 1129, 1466
FauI CCCGC 2 cut(s) 100, 573
FauNDI CATATG 3 cut(s) 516, 583, 1087
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 146, 286
FokI GGATG 3 cut(s) 1037, 1163, 1346
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 146, 286
FspBI CTAG 4 cut(s) 141, 383, 480, 1212
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 146, 286
HapII CCGG 2 cut(s) 829, 887
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 5 cut(s) 249, 370, 616, 1133, 1470
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 2 cut(s) 364, 1005
HindII GTYRAC 2 cut(s) 364, 1005
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 7 cut(s) 134, 218, 717, 736, 935, 986, 1115
HpaII CCGG 2 cut(s) 829, 887
HphI GGTGA 4 cut(s) 81, 876, 1078, 1235
Hpy166II GTNNAC 4 cut(s) 364, 778, 1005, 1243
Hpy188I TCNGA 3 cut(s) 130, 716, 1162
Hpy8I GTNNAC 4 cut(s) 364, 778, 1005, 1243
HpyAV CCTTC 7 cut(s) 544, 829, 915, 943, 965, 1083, 1324
HpyCH4III ACNGT 3 cut(s) 174, 1109, 1409
HpyCH4IV ACGT 1 cut(s) 901
HpyCH4V TGCA 8 cut(s) 215, 452, 468, 520, 944, 1051, 1129, 1446
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 485, 642
HpyF3I CTNAG 2 cut(s) 17, 336
HpySE526I ACGT 1 cut(s) 901
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 5 cut(s) 249, 370, 616, 1133, 1470
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 711
LmnI GCTCC 3 cut(s) 153, 493, 930
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 3 cut(s) 202, 264, 455
MaeI CTAG 4 cut(s) 141, 383, 480, 1212
MaeII ACGT 1 cut(s) 901
MaeIII GTNAC 4 cut(s) 764, 824, 1066, 1226
MalI GATC 1 cut(s) 713
MboI GATC 1 cut(s) 711
MboII GAAGA 5 cut(s) 57, 143, 435, 584, 1338
MhlI GDGCHC 1 cut(s) 747
MlyI GAGTC 2 cut(s) 726, 944
MmeI TCCRAC 1 cut(s) 484
Mph1103I ATGCAT 2 cut(s) 454, 470
MseI TTAA 6 cut(s) 540, 909, 966, 1041, 1122, 1233
MslI CAYNNNNRTG 1 cut(s) 617
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 2 cut(s) 829, 887
MspR9I CCNGG 3 cut(s) 153, 200, 917
MvaI CCWGG 3 cut(s) 153, 200, 917
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 101, 485, 642
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 3 cut(s) 516, 583, 1087
NdeII GATC 1 cut(s) 711
NlaIII CATG 5 cut(s) 249, 370, 616, 1133, 1470
NlaIV GGNNCC 2 cut(s) 926, 1458
NmeAIII GCCGAG 3 cut(s) 121, 671, 1292
NmuCI GTSAC 3 cut(s) 824, 1066, 1226
NruI TCGCGA 1 cut(s) 303
NsiI ATGCAT 2 cut(s) 454, 470
NspI RCATGY 3 cut(s) 370, 1133, 1470
NspV TTCGAA 1 cut(s) 531
PaeI GCATGC 1 cut(s) 1470
PasI CCCWGGG 1 cut(s) 152
PciI ACATGT 1 cut(s) 366
PfeI GAWTC 5 cut(s) 134, 218, 736, 986, 1115
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 2 cut(s) 147, 287
PleI GAGTC 2 cut(s) 725, 943
PpsI GAGTC 2 cut(s) 725, 943
Ppu21I YACGTR 1 cut(s) 902
PpuMI RGGWCCY 1 cut(s) 952
PscI ACATGT 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 952
Psp6I CCWGG 3 cut(s) 151, 198, 915
PspGI CCWGG 3 cut(s) 151, 198, 915
PspN4I GGNNCC 2 cut(s) 926, 1458
PspPI GGNCC 2 cut(s) 587, 952
PspPPI RGGWCCY 1 cut(s) 952
PstI CTGCAG 1 cut(s) 1448
RruI TCGCGA 1 cut(s) 303
RsaI GTAC 2 cut(s) 184, 1411
RsaNI GTAC 2 cut(s) 183, 1410
RseI CAYNNNNRTG 1 cut(s) 617
SacI GAGCTC 1 cut(s) 747
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 6 cut(s) 540, 909, 966, 1041, 1122, 1233
SatI GCNGC 2 cut(s) 146, 286
Sau3AI GATC 1 cut(s) 711
Sau96I GGNCC 2 cut(s) 587, 952
SchI GAGTC 2 cut(s) 726, 944
ScrFI CCNGG 3 cut(s) 153, 200, 917
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 3 cut(s) 202, 264, 455
SfcI CTRYAG 2 cut(s) 1444, 1461
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 2 cut(s) 587, 952
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 3 cut(s) 1061, 1121, 1139
SmoI CTYRAG 3 cut(s) 1061, 1121, 1139
SphI GCATGC 1 cut(s) 1470
SsiI CCGC 7 cut(s) 72, 93, 177, 286, 566, 990, 1418
SspMI CTAG 4 cut(s) 141, 383, 480, 1212
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 151, 198, 915
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 3 cut(s) 174, 1109, 1409
TaiI ACGT 1 cut(s) 904
TaqI TCGA 5 cut(s) 137, 207, 363, 531, 1181
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 5 cut(s) 134, 218, 736, 986, 1115
Tru1I TTAA 6 cut(s) 540, 909, 966, 1041, 1122, 1233
Tru9I TTAA 6 cut(s) 540, 909, 966, 1041, 1122, 1233
TscAI CASTG 3 cut(s) 979, 1263, 1448
TseFI GTSAC 3 cut(s) 824, 1066, 1226
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 3 cut(s) 824, 1066, 1226
TspDTI ATGAA 7 cut(s) 17, 510, 563, 741, 999, 1065, 1343
TspGWI ACGGA 2 cut(s) 335, 579
TspRI CASTG 3 cut(s) 979, 1263, 1448
Vha464I CTTAAG 1 cut(s) 1121
VpaK11BI GGWCC 2 cut(s) 587, 952
XapI RAATTY 5 cut(s) 113, 534, 962, 1037, 1248
XceI RCATGY 3 cut(s) 370, 1133, 1470
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 4 cut(s) 141, 383, 480, 1212
Zsp2I ATGCAT 2 cut(s) 454, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.