Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 358 - 519 | 1.9e-12 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 430 - 545 | 2.7e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 445 - 503 | 2.7e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 456 - 503 | 2.2e-10 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1793 |
| AarI | CACCTGC | 1 cut(s) | 122 |
| Acc36I | ACCTGC | 2 cut(s) | 122, 1945 |
| AccB1I | GGYRCC | 1 cut(s) | 1322 |
| AccI | GTMKAC | 3 cut(s) | 123, 318, 2042 |
| AccII | CGCG | 1 cut(s) | 258 |
| AciI | CCGC | 5 cut(s) | 241, 521, 995, 1092, 2196 |
| AclWI | GGATC | 4 cut(s) | 674, 1862, 1974, 2300 |
| AcsI | RAATTY | 9 cut(s) | 489, 917, 988, 1016, 1227, 1357, 1560, 1656, 2292 |
| AcuI | CTGAAG | 1 cut(s) | 1536 |
| AcyI | GRCGYC | 1 cut(s) | 1364 |
| AdeI | CACNNNGTG | 1 cut(s) | 773 |
| AfaI | GTAC | 5 cut(s) | 139, 1382, 1641, 1978, 2338 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 790 |
| AflII | CTTAAG | 2 cut(s) | 1100, 2218 |
| AflIII | ACRYGT | 2 cut(s) | 321, 1530 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1940 |
| AjnI | CCWGG | 2 cut(s) | 153, 870 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1565, 1597 |
| AleI | CACNNNNGTG | 1 cut(s) | 2139 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 501, 533 |
| Alw21I | GWGCWC | 3 cut(s) | 105, 702, 1809 |
| Alw26I | GTCTC | 1 cut(s) | 1850 |
| AlwI | GGATC | 4 cut(s) | 674, 1862, 1974, 2300 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 933 |
| AoxI | GGCC | 2 cut(s) | 2059, 2095 |
| ApeKI | GCWGC | 5 cut(s) | 938, 1373, 1607, 2252, 2270 |
| ApoI | RAATTY | 9 cut(s) | 489, 917, 988, 1016, 1227, 1357, 1560, 1656, 2292 |
| AspLEI | GCGC | 1 cut(s) | 240 |
| AspS9I | GGNCC | 3 cut(s) | 542, 907, 2260 |
| AsuHPI | GGTGA | 5 cut(s) | 831, 1057, 1138, 1214, 2092 |
| AvaII | GGWCC | 3 cut(s) | 542, 907, 2260 |
| BanI | GGYRCC | 1 cut(s) | 1322 |
| BanII | GRGCYC | 1 cut(s) | 702 |
| BbsI | GAAGAC | 1 cut(s) | 55 |
| Bbv12I | GWGCWC | 3 cut(s) | 105, 702, 1809 |
| BbvI | GCAGC | 5 cut(s) | 950, 1360, 1619, 2239, 2257 |
| BccI | CCATC | 4 cut(s) | 719, 1156, 1500, 1880 |
| BceAI | ACGGC | 1 cut(s) | 1925 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 217, 251, 308, 342 |
| BciT130I | CCWGG | 2 cut(s) | 155, 872 |
| BciVI | GTATCC | 2 cut(s) | 308, 638 |
| BcoDI | GTCTC | 1 cut(s) | 1850 |
| BfaI | CTAG | 5 cut(s) | 435, 1191, 1994, 2063, 2120 |
| BfmI | CTRYAG | 4 cut(s) | 124, 964, 1327, 2253 |
| BfrI | CTTAAG | 2 cut(s) | 1100, 2218 |
| BfuAI | ACCTGC | 2 cut(s) | 122, 1945 |
| BfuI | GTATCC | 2 cut(s) | 308, 638 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2249 |
| BglII | AGATCT | 1 cut(s) | 2155 |
| BisI | GCNGC | 7 cut(s) | 241, 939, 1374, 1608, 2196, 2253, 2271 |
| BlsI | GCNGC | 7 cut(s) | 242, 940, 1375, 1609, 2197, 2254, 2272 |
| Bme1390I | CCNGG | 2 cut(s) | 155, 872 |
| Bme18I | GGWCC | 3 cut(s) | 542, 907, 2260 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1940 |
| BmgT120I | GGNCC | 3 cut(s) | 542, 907, 2260 |
| BmiI | GGNNCC | 4 cut(s) | 881, 1324, 1779, 2261 |
| BmrFI | CCNGG | 2 cut(s) | 155, 872 |
| BmsI | GCATC | 7 cut(s) | 66, 157, 219, 410, 1718, 1720, 1757 |
| BpiI | GAAGAC | 1 cut(s) | 55 |
| BpuEI | CTTGAG | 5 cut(s) | 1061, 1139, 1874, 1915, 1973 |
| Bsa29I | ATCGAT | 1 cut(s) | 162 |
| BsaAI | YACGTR | 1 cut(s) | 857 |
| BsaHI | GRCGYC | 1 cut(s) | 1364 |
| BsaJI | CCNNGG | 4 cut(s) | 40, 200, 871, 1246 |
| BsaWI | WCCGGW | 3 cut(s) | 783, 841, 1424 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 790 |
| Bse1I | ACTGG | 2 cut(s) | 927, 1661 |
| Bse3DI | GCAATG | 1 cut(s) | 233 |
| BseBI | CCWGG | 2 cut(s) | 155, 872 |
| BseCI | ATCGAT | 1 cut(s) | 162 |
| BseDI | CCNNGG | 4 cut(s) | 40, 200, 871, 1246 |
| BseGI | GGATG | 3 cut(s) | 1009, 1772, 2238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 790 |
| BseMI | GCAATG | 1 cut(s) | 233 |
| BseMII | CTCAG | 4 cut(s) | 120, 305, 1328, 1975 |
| BseNI | ACTGG | 2 cut(s) | 927, 1661 |
| BseRI | GAGGAG | 1 cut(s) | 1835 |
| BseXI | GCAGC | 5 cut(s) | 950, 1360, 1619, 2239, 2257 |
| BsgI | GTGCAG | 2 cut(s) | 150, 957 |
| Bsh1236I | CGCG | 1 cut(s) | 258 |
| BshFI | GGCC | 2 cut(s) | 2061, 2097 |
| BshNI | GGYRCC | 1 cut(s) | 1322 |
| BshVI | ATCGAT | 1 cut(s) | 162 |
| BsiHKAI | GWGCWC | 3 cut(s) | 105, 702, 1809 |
| BsiSI | CCGG | 3 cut(s) | 784, 842, 1425 |
| BslFI | GGGAC | 3 cut(s) | 355, 2273, 2298 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 790 |
| BsmAI | GTCTC | 1 cut(s) | 1850 |
| BsmFI | GGGAC | 3 cut(s) | 355, 2273, 2298 |
| BsmI | GAATGC | 2 cut(s) | 79, 981 |
| BsnI | GGCC | 2 cut(s) | 2061, 2097 |
| Bsp1286I | GDGCHC | 3 cut(s) | 105, 702, 1809 |
| Bsp1407I | TGTACA | 2 cut(s) | 1380, 2336 |
| Bsp143I | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| Bsp19I | CCATGG | 1 cut(s) | 200 |
| Bsp68I | TCGCGA | 1 cut(s) | 258 |
| BspACI | CCGC | 5 cut(s) | 241, 521, 995, 1092, 2196 |
| BspANI | GGCC | 2 cut(s) | 2061, 2097 |
| BspCNI | CTCAG | 4 cut(s) | 119, 304, 1329, 1974 |
| BspDI | ATCGAT | 1 cut(s) | 162 |
| BspFNI | CGCG | 1 cut(s) | 258 |
| BspLI | GGNNCC | 4 cut(s) | 881, 1324, 1779, 2261 |
| BspMAI | CTGCAG | 1 cut(s) | 2257 |
| BspMI | ACCTGC | 2 cut(s) | 122, 1945 |
| BspPI | GGATC | 4 cut(s) | 674, 1862, 1974, 2300 |
| BspT107I | GGYRCC | 1 cut(s) | 1322 |
| BspTI | CTTAAG | 2 cut(s) | 1100, 2218 |
| BsrDI | GCAATG | 1 cut(s) | 233 |
| BsrGI | TGTACA | 2 cut(s) | 1380, 2336 |
| BsrI | ACTGG | 2 cut(s) | 927, 1661 |
| BssECI | CCNNGG | 4 cut(s) | 40, 200, 871, 1246 |
| BssMI | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| BssNI | GRCGYC | 1 cut(s) | 1364 |
| BssT1I | CCWWGG | 2 cut(s) | 40, 200 |
| Bst2UI | CCWGG | 2 cut(s) | 155, 872 |
| Bst4CI | ACNGT | 7 cut(s) | 36, 98, 121, 128, 935, 1088, 1620 |
| Bst6I | CTCTTC | 5 cut(s) | 373, 522, 1512, 1743, 2078 |
| BstACI | GRCGYC | 1 cut(s) | 1364 |
| BstAFI | CTTAAG | 2 cut(s) | 1100, 2218 |
| BstAUI | TGTACA | 2 cut(s) | 1380, 2336 |
| BstBAI | YACGTR | 1 cut(s) | 857 |
| BstC8I | GCNNGC | 4 cut(s) | 1334, 1761, 2200, 2204 |
| BstDEI | CTNAG | 6 cut(s) | 106, 291, 808, 1337, 1645, 1961 |
| BstDSI | CCRYGG | 1 cut(s) | 200 |
| BstF5I | GGATG | 3 cut(s) | 1009, 1772, 2238 |
| BstFNI | CGCG | 1 cut(s) | 258 |
| BstHHI | GCGC | 1 cut(s) | 240 |
| BstKTI | GATC | 8 cut(s) | 669, 963, 1556, 1755, 1870, 1969, 2158, 2308 |
| BstMAI | GTCTC | 1 cut(s) | 1850 |
| BstMBI | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 440, 597, 1394, 1607, 2249 |
| BstNI | CCWGG | 2 cut(s) | 155, 872 |
| BstNSI | RCATGY | 4 cut(s) | 325, 1112, 1336, 1534 |
| BstSCI | CCNGG | 2 cut(s) | 153, 870 |
| BstSFI | CTRYAG | 4 cut(s) | 124, 964, 1327, 2253 |
| BstUI | CGCG | 1 cut(s) | 258 |
| BstV1I | GCAGC | 5 cut(s) | 950, 1360, 1619, 2239, 2257 |
| BstV2I | GAAGAC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 1 cut(s) | 2155 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1878 |
| BstYI | RGATCY | 1 cut(s) | 2155 |
| Bsu15I | ATCGAT | 1 cut(s) | 162 |
| BsuI | GTATCC | 2 cut(s) | 308, 638 |
| BsuRI | GGCC | 2 cut(s) | 2061, 2097 |
| BsuTUI | ATCGAT | 1 cut(s) | 162 |
| BtgI | CCRYGG | 1 cut(s) | 200 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 3 cut(s) | 1009, 1772, 2238 |
| BtsI | GCAGTG | 1 cut(s) | 2145 |
| BtsIMutI | CAGTG | 7 cut(s) | 32, 103, 133, 934, 1242, 2145, 2339 |
| BtuMI | TCGCGA | 1 cut(s) | 258 |
| BveI | ACCTGC | 2 cut(s) | 122, 1945 |
| Cac8I | GCNNGC | 4 cut(s) | 1334, 1761, 2200, 2204 |
| CaiI | CAGNNNCTG | 1 cut(s) | 933 |
| CfoI | GCGC | 1 cut(s) | 240 |
| Cfr13I | GGNCC | 3 cut(s) | 542, 907, 2260 |
| ClaI | ATCGAT | 1 cut(s) | 162 |
| CseI | GACGC | 1 cut(s) | 1372 |
| Csp6I | GTAC | 5 cut(s) | 138, 1381, 1640, 1977, 2337 |
| CviQI | GTAC | 5 cut(s) | 138, 1381, 1640, 1977, 2337 |
| DdeI | CTNAG | 6 cut(s) | 106, 291, 808, 1337, 1645, 1961 |
| DpnI | GATC | 8 cut(s) | 668, 962, 1555, 1754, 1869, 1968, 2157, 2307 |
| DpnII | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| DraI | TTTAAA | 4 cut(s) | 865, 922, 1021, 2407 |
| DraIII | CACNNNGTG | 1 cut(s) | 773 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1940 |
| Eam1104I | CTCTTC | 5 cut(s) | 373, 522, 1512, 1743, 2078 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1940 |
| EarI | CTCTTC | 5 cut(s) | 373, 522, 1512, 1743, 2078 |
| Ecl136II | GAGCTC | 1 cut(s) | 700 |
| Eco130I | CCWWGG | 2 cut(s) | 40, 200 |
| Eco24I | GRGCYC | 1 cut(s) | 702 |
| Eco32I | GATATC | 1 cut(s) | 151 |
| Eco47I | GGWCC | 3 cut(s) | 542, 907, 2260 |
| Eco53kI | GAGCTC | 1 cut(s) | 700 |
| Eco57I | CTGAAG | 1 cut(s) | 1536 |
| EcoICRI | GAGCTC | 1 cut(s) | 700 |
| EcoO109I | RGGNCCY | 1 cut(s) | 907 |
| EcoRI | GAATTC | 2 cut(s) | 1560, 1656 |
| EcoRII | CCWGG | 2 cut(s) | 153, 870 |
| EcoRV | GATATC | 1 cut(s) | 151 |
| EcoT14I | CCWWGG | 2 cut(s) | 40, 200 |
| EcoT22I | ATGCAT | 4 cut(s) | 409, 425, 1603, 1735 |
| EcoT38I | GRGCYC | 1 cut(s) | 702 |
| ErhI | CCWWGG | 2 cut(s) | 40, 200 |
| FaqI | GGGAC | 3 cut(s) | 355, 2273, 2298 |
| FauI | CCCGC | 1 cut(s) | 528 |
| FauNDI | CATATG | 5 cut(s) | 471, 538, 1066, 1603, 1744 |
| FblI | GTMKAC | 3 cut(s) | 123, 318, 2042 |
| Fnu4HI | GCNGC | 7 cut(s) | 241, 939, 1374, 1608, 2196, 2253, 2271 |
| FokI | GGATG | 3 cut(s) | 1016, 1779, 2245 |
| FriOI | GRGCYC | 1 cut(s) | 702 |
| Fsp4HI | GCNGC | 7 cut(s) | 241, 939, 1374, 1608, 2196, 2253, 2271 |
| FspBI | CTAG | 5 cut(s) | 435, 1191, 1994, 2063, 2120 |
| GlaI | GCGC | 1 cut(s) | 239 |
| GluI | GCNGC | 7 cut(s) | 241, 939, 1374, 1608, 2196, 2253, 2271 |
| HaeIII | GGCC | 2 cut(s) | 2061, 2097 |
| HapII | CCGG | 3 cut(s) | 784, 842, 1425 |
| HgaI | GACGC | 1 cut(s) | 1372 |
| HhaI | GCGC | 1 cut(s) | 240 |
| Hin1I | GRCGYC | 1 cut(s) | 1364 |
| Hin6I | GCGC | 1 cut(s) | 238 |
| HinP1I | GCGC | 1 cut(s) | 238 |
| HincII | GTYRAC | 1 cut(s) | 319 |
| HindII | GTYRAC | 1 cut(s) | 319 |
| HindIII | AAGCTT | 2 cut(s) | 1073, 2221 |
| HinfI | GANTC | 8 cut(s) | 173, 672, 691, 890, 1475, 2033, 2039, 2330 |
| HpaII | CCGG | 3 cut(s) | 784, 842, 1425 |
| HphI | GGTGA | 5 cut(s) | 831, 1057, 1138, 1214, 2092 |
| Hpy166II | GTNNAC | 8 cut(s) | 124, 319, 733, 1097, 1222, 1616, 2043, 2339 |
| Hpy8I | GTNNAC | 8 cut(s) | 124, 319, 733, 1097, 1222, 1616, 2043, 2339 |
| HpyCH4III | ACNGT | 7 cut(s) | 36, 98, 121, 128, 935, 1088, 1620 |
| HpyCH4IV | ACGT | 2 cut(s) | 856, 2287 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 440, 597, 1394, 1607, 2249 |
| HpyF3I | CTNAG | 6 cut(s) | 106, 291, 808, 1337, 1645, 1961 |
| HpySE526I | ACGT | 2 cut(s) | 856, 2287 |
| Hsp92I | GRCGYC | 1 cut(s) | 1364 |
| HspAI | GCGC | 1 cut(s) | 238 |
| Kzo9I | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| LmnI | GCTCC | 4 cut(s) | 431, 448, 885, 1777 |
| Lsp1109I | GCAGC | 5 cut(s) | 950, 1360, 1619, 2239, 2257 |
| LweI | GCATC | 7 cut(s) | 66, 157, 219, 410, 1718, 1720, 1757 |
| MaeI | CTAG | 5 cut(s) | 435, 1191, 1994, 2063, 2120 |
| MaeII | ACGT | 2 cut(s) | 856, 2287 |
| MaeIII | GTNAC | 8 cut(s) | 719, 779, 929, 1045, 1205, 1567, 1919, 2143 |
| MalI | GATC | 8 cut(s) | 668, 962, 1555, 1754, 1869, 1968, 2157, 2307 |
| MboI | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| MfeI | CAATTG | 1 cut(s) | 1721 |
| MflI | RGATCY | 1 cut(s) | 2155 |
| MhlI | GDGCHC | 3 cut(s) | 105, 702, 1809 |
| MlyI | GAGTC | 3 cut(s) | 681, 899, 2048 |
| MmeI | TCCRAC | 1 cut(s) | 439 |
| Mph1103I | ATGCAT | 4 cut(s) | 409, 425, 1603, 1735 |
| MslI | CAYNNNNRTG | 4 cut(s) | 572, 1529, 2113, 2139 |
| MspA1I | CMGCKG | 2 cut(s) | 1373, 2198 |
| MspCI | CTTAAG | 2 cut(s) | 1100, 2218 |
| MspI | CCGG | 3 cut(s) | 784, 842, 1425 |
| MspR9I | CCNGG | 2 cut(s) | 155, 872 |
| MunI | CAATTG | 1 cut(s) | 1721 |
| Mva1269I | GAATGC | 2 cut(s) | 79, 981 |
| MvaI | CCWGG | 2 cut(s) | 155, 872 |
| MvnI | CGCG | 1 cut(s) | 258 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 440, 597, 1394, 1607, 2249 |
| NcoI | CCATGG | 1 cut(s) | 200 |
| NdeI | CATATG | 5 cut(s) | 471, 538, 1066, 1603, 1744 |
| NdeII | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| NlaIV | GGNNCC | 4 cut(s) | 881, 1324, 1779, 2261 |
| NmeAIII | GCCGAG | 2 cut(s) | 626, 1271 |
| NmuCI | GTSAC | 5 cut(s) | 779, 929, 1045, 1205, 2143 |
| NruI | TCGCGA | 1 cut(s) | 258 |
| NsiI | ATGCAT | 4 cut(s) | 409, 425, 1603, 1735 |
| NspI | RCATGY | 4 cut(s) | 325, 1112, 1336, 1534 |
| OliI | CACNNNNGTG | 1 cut(s) | 2139 |
| PaeI | GCATGC | 1 cut(s) | 1336 |
| PaqCI | CACCTGC | 1 cut(s) | 122 |
| PciI | ACATGT | 2 cut(s) | 321, 1530 |
| PctI | GAATGC | 2 cut(s) | 79, 981 |
| PfeI | GAWTC | 5 cut(s) | 173, 691, 1475, 2033, 2330 |
| PfoI | TCCNGGA | 1 cut(s) | 153 |
| PkrI | GCNGC | 7 cut(s) | 242, 940, 1375, 1609, 2197, 2254, 2272 |
| PleI | GAGTC | 3 cut(s) | 680, 898, 2047 |
| PpsI | GAGTC | 3 cut(s) | 680, 898, 2047 |
| Ppu21I | YACGTR | 1 cut(s) | 857 |
| PpuMI | RGGWCCY | 1 cut(s) | 907 |
| PscI | ACATGT | 2 cut(s) | 321, 1530 |
| PsiI | TTATAA | 1 cut(s) | 1793 |
| Psp124BI | GAGCTC | 1 cut(s) | 702 |
| Psp5II | RGGWCCY | 1 cut(s) | 907 |
| Psp6I | CCWGG | 2 cut(s) | 153, 870 |
| PspGI | CCWGG | 2 cut(s) | 153, 870 |
| PspN4I | GGNNCC | 4 cut(s) | 881, 1324, 1779, 2261 |
| PspPI | GGNCC | 3 cut(s) | 542, 907, 2260 |
| PspPPI | RGGWCCY | 1 cut(s) | 907 |
| PstI | CTGCAG | 1 cut(s) | 2257 |
| PstNI | CAGNNNCTG | 1 cut(s) | 933 |
| PsuI | RGATCY | 1 cut(s) | 2155 |
| PvuII | CAGCTG | 1 cut(s) | 1373 |
| RruI | TCGCGA | 1 cut(s) | 258 |
| RsaI | GTAC | 5 cut(s) | 139, 1382, 1641, 1978, 2338 |
| RsaNI | GTAC | 5 cut(s) | 138, 1381, 1640, 1977, 2337 |
| RseI | CAYNNNNRTG | 4 cut(s) | 572, 1529, 2113, 2139 |
| SacI | GAGCTC | 1 cut(s) | 702 |
| SalI | GTCGAC | 1 cut(s) | 317 |
| SatI | GCNGC | 7 cut(s) | 241, 939, 1374, 1608, 2196, 2253, 2271 |
| Sau3AI | GATC | 8 cut(s) | 666, 960, 1553, 1752, 1867, 1966, 2155, 2305 |
| Sau96I | GGNCC | 3 cut(s) | 542, 907, 2260 |
| SchI | GAGTC | 3 cut(s) | 681, 899, 2048 |
| ScrFI | CCNGG | 2 cut(s) | 155, 872 |
| SduI | GDGCHC | 3 cut(s) | 105, 702, 1809 |
| SfaNI | GCATC | 7 cut(s) | 66, 157, 219, 410, 1718, 1720, 1757 |
| SfcI | CTRYAG | 4 cut(s) | 124, 964, 1327, 2253 |
| SinI | GGWCC | 3 cut(s) | 542, 907, 2260 |
| SmiI | ATTTAAAT | 1 cut(s) | 2407 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 572, 1529, 2113, 2139 |
| SmlI | CTYRAG | 7 cut(s) | 1040, 1100, 1118, 1853, 1894, 1952, 2218 |
| SmoI | CTYRAG | 7 cut(s) | 1040, 1100, 1118, 1853, 1894, 1952, 2218 |
| SphI | GCATGC | 1 cut(s) | 1336 |
| SsiI | CCGC | 5 cut(s) | 241, 521, 995, 1092, 2196 |
| SspI | AATATT | 1 cut(s) | 2403 |
| SspMI | CTAG | 5 cut(s) | 435, 1191, 1994, 2063, 2120 |
| SstI | GAGCTC | 1 cut(s) | 702 |
| StyD4I | CCNGG | 2 cut(s) | 153, 870 |
| StyI | CCWWGG | 2 cut(s) | 40, 200 |
| SwaI | ATTTAAAT | 1 cut(s) | 2407 |
| TaaI | ACNGT | 7 cut(s) | 36, 98, 121, 128, 935, 1088, 1620 |
| TaiI | ACGT | 2 cut(s) | 859, 2290 |
| TaqI | TCGA | 5 cut(s) | 162, 318, 564, 1160, 1803 |
| TaqII | GACCGA | 2 cut(s) | 2277, 2307 |
| TatI | WGTACW | 3 cut(s) | 1380, 1976, 2336 |
| TauI | GCSGC | 2 cut(s) | 243, 2198 |
| TfiI | GAWTC | 5 cut(s) | 173, 691, 1475, 2033, 2330 |
| TscAI | CASTG | 7 cut(s) | 39, 103, 133, 934, 1242, 2152, 2346 |
| TseFI | GTSAC | 5 cut(s) | 779, 929, 1045, 1205, 2143 |
| TseI | GCWGC | 5 cut(s) | 938, 1373, 1607, 2252, 2270 |
| Tsp45I | GTSAC | 5 cut(s) | 779, 929, 1045, 1205, 2143 |
| TspGWI | ACGGA | 2 cut(s) | 290, 534 |
| TspRI | CASTG | 7 cut(s) | 39, 103, 133, 934, 1242, 2152, 2346 |
| Vha464I | CTTAAG | 2 cut(s) | 1100, 2218 |
| VpaK11BI | GGWCC | 3 cut(s) | 542, 907, 2260 |
| XapI | RAATTY | 9 cut(s) | 489, 917, 988, 1016, 1227, 1357, 1560, 1656, 2292 |
| XbaI | TCTAGA | 2 cut(s) | 1993, 2119 |
| XceI | RCATGY | 4 cut(s) | 325, 1112, 1336, 1534 |
| XmiI | GTMKAC | 3 cut(s) | 123, 318, 2042 |
| XspI | CTAG | 5 cut(s) | 435, 1191, 1994, 2063, 2120 |
| Zsp2I | ATGCAT | 4 cut(s) | 409, 425, 1603, 1735 |