Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Reverse (-)

61988054 .. 61991716

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATGAAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACAAAGGAGATTTTGAAGCTGTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTGTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCGGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTGTTGGCATTCCGAATTTAGCGGTGAGGACCTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

112

Amino Acids

12.58

Weight (kDa)

5.46

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	242, 313
AdeI	CACNNNGTG	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	20, 127, 279
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	25, 130
AluI	AGCT	2 cut(s)	25, 130
Alw21I	GWGCWC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	2 cut(s)	242, 313
AspS9I	GGNCC	2 cut(s)	232, 327
AsuHPI	GGTGA	3 cut(s)	156, 266, 334
AvaII	GGWCC	2 cut(s)	232, 327
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	289
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	232, 327
BmgT120I	GGNCC	2 cut(s)	232, 327
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	2 cut(s)	108, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	109, 167, 252
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	320
BspHI	TCATGA	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	182
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	275
CciI	TCATGA	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	232, 327
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	4 cut(s)	25, 130, 205, 251
CviKI_1	RGCY	4 cut(s)	25, 130, 205, 251
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
DraI	TTTAAA	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	232, 327
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	2 cut(s)	232, 327
EcoRII	CCWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	339
FaiI	YATR	4 cut(s)	143, 291, 297, 337
FatI	CATG	1 cut(s)	335
Fnu4HI	GCNGC	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	3 cut(s)	109, 167, 252
Hin1II	CATG	1 cut(s)	339
HinfI	GANTC	2 cut(s)	16, 215
HpaII	CCGG	3 cut(s)	109, 167, 252
HphI	GGTGA	3 cut(s)	156, 266, 334
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	20, 239, 336
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	195, 223, 245
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	224, 263
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	339
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	122, 180, 182, 209, 224, 252, 265
Lsp1109I	GCAGC	1 cut(s)	275
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	44, 104, 254
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	66, 79, 242, 313
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	1 cut(s)	318
MseI	TTAA	1 cut(s)	246
MspI	CCGG	3 cut(s)	109, 167, 252
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	2 cut(s)	104, 254
PagI	TCATGA	1 cut(s)	335
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	182
PpuMI	RGGWCCY	2 cut(s)	232, 327
Psp124BI	GAGCTC	1 cut(s)	27
Psp5II	RGGWCCY	2 cut(s)	232, 327
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	232, 327
PspPPI	RGGWCCY	2 cut(s)	232, 327
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	232, 327
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	5 cut(s)	27, 132, 184, 234, 332
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	2 cut(s)	232, 327
Sse9I	AATT	4 cut(s)	66, 79, 242, 313
SsiI	CCGC	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	184
TasI	AATT	4 cut(s)	66, 79, 242, 313
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	104, 254
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	2 cut(s)	104, 254
TspDTI	ATGAA	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	232, 327
XapI	RAATTY	2 cut(s)	242, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.