Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 281 - 443 | 6.8e-13 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 354 - 469 | 1.5e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 369 - 427 | 1.6e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 380 - 427 | 1.4e-10 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1565, 1681 |
| AccB1I | GGYRCC | 1 cut(s) | 1094 |
| AccI | GTMKAC | 1 cut(s) | 90 |
| AccII | CGCG | 1 cut(s) | 30 |
| AciI | CCGC | 4 cut(s) | 13, 293, 767, 864 |
| AclWI | GGATC | 2 cut(s) | 446, 1634 |
| AcsI | RAATTY | 8 cut(s) | 261, 689, 760, 788, 999, 1129, 1332, 1428 |
| AcuI | CTGAAG | 1 cut(s) | 1308 |
| AcyI | GRCGYC | 1 cut(s) | 1136 |
| AdeI | CACNNNGTG | 1 cut(s) | 545 |
| AfaI | GTAC | 2 cut(s) | 1154, 1413 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 562 |
| AflII | CTTAAG | 1 cut(s) | 872 |
| AflIII | ACRYGT | 2 cut(s) | 93, 1302 |
| AjnI | CCWGG | 1 cut(s) | 642 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1337, 1369 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 273, 305 |
| Alw21I | GWGCWC | 2 cut(s) | 474, 1581 |
| Alw26I | GTCTC | 1 cut(s) | 1622 |
| AlwI | GGATC | 2 cut(s) | 446, 1634 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 705 |
| ApeKI | GCWGC | 3 cut(s) | 710, 1145, 1379 |
| ApoI | RAATTY | 8 cut(s) | 261, 689, 760, 788, 999, 1129, 1332, 1428 |
| AspS9I | GGNCC | 2 cut(s) | 314, 679 |
| AsuHPI | GGTGA | 3 cut(s) | 603, 829, 986 |
| AvaII | GGWCC | 2 cut(s) | 314, 679 |
| BanI | GGYRCC | 1 cut(s) | 1094 |
| BanII | GRGCYC | 1 cut(s) | 474 |
| Bbv12I | GWGCWC | 2 cut(s) | 474, 1581 |
| BbvI | GCAGC | 3 cut(s) | 722, 1132, 1391 |
| BccI | CCATC | 4 cut(s) | 491, 928, 1272, 1652 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 80, 114 |
| BciT130I | CCWGG | 1 cut(s) | 644 |
| BciVI | GTATCC | 2 cut(s) | 80, 410 |
| BcoDI | GTCTC | 1 cut(s) | 1622 |
| BfaI | CTAG | 3 cut(s) | 110, 207, 963 |
| BfmI | CTRYAG | 2 cut(s) | 736, 1099 |
| BfrI | CTTAAG | 1 cut(s) | 872 |
| BfuI | GTATCC | 2 cut(s) | 80, 410 |
| BisI | GCNGC | 4 cut(s) | 13, 711, 1146, 1380 |
| BlsI | GCNGC | 4 cut(s) | 14, 712, 1147, 1381 |
| Bme1390I | CCNGG | 1 cut(s) | 644 |
| Bme18I | GGWCC | 2 cut(s) | 314, 679 |
| BmgT120I | GGNCC | 2 cut(s) | 314, 679 |
| BmiI | GGNNCC | 3 cut(s) | 653, 1096, 1551 |
| BmrFI | CCNGG | 1 cut(s) | 644 |
| BmsI | GCATC | 4 cut(s) | 182, 1490, 1492, 1529 |
| BpuEI | CTTGAG | 3 cut(s) | 833, 911, 1646 |
| BsaAI | YACGTR | 1 cut(s) | 629 |
| BsaHI | GRCGYC | 1 cut(s) | 1136 |
| BsaJI | CCNNGG | 2 cut(s) | 643, 1018 |
| BsaWI | WCCGGW | 3 cut(s) | 555, 613, 1196 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 562 |
| Bse1I | ACTGG | 2 cut(s) | 699, 1433 |
| BseBI | CCWGG | 1 cut(s) | 644 |
| BseDI | CCNNGG | 2 cut(s) | 643, 1018 |
| BseGI | GGATG | 3 cut(s) | 781, 907, 1544 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BseMII | CTCAG | 2 cut(s) | 77, 1100 |
| BseNI | ACTGG | 2 cut(s) | 699, 1433 |
| BseRI | GAGGAG | 1 cut(s) | 1607 |
| BseXI | GCAGC | 3 cut(s) | 722, 1132, 1391 |
| BsgI | GTGCAG | 1 cut(s) | 729 |
| Bsh1236I | CGCG | 1 cut(s) | 30 |
| BshNI | GGYRCC | 1 cut(s) | 1094 |
| BsiHKAI | GWGCWC | 2 cut(s) | 474, 1581 |
| BsiSI | CCGG | 3 cut(s) | 556, 614, 1197 |
| BslFI | GGGAC | 1 cut(s) | 127 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BsmAI | GTCTC | 1 cut(s) | 1622 |
| BsmFI | GGGAC | 1 cut(s) | 127 |
| BsmI | GAATGC | 1 cut(s) | 753 |
| Bsp1286I | GDGCHC | 2 cut(s) | 474, 1581 |
| Bsp1407I | TGTACA | 1 cut(s) | 1152 |
| Bsp143I | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| Bsp68I | TCGCGA | 1 cut(s) | 30 |
| BspACI | CCGC | 4 cut(s) | 13, 293, 767, 864 |
| BspCNI | CTCAG | 2 cut(s) | 76, 1101 |
| BspFNI | CGCG | 1 cut(s) | 30 |
| BspLI | GGNNCC | 3 cut(s) | 653, 1096, 1551 |
| BspPI | GGATC | 2 cut(s) | 446, 1634 |
| BspT107I | GGYRCC | 1 cut(s) | 1094 |
| BspTI | CTTAAG | 1 cut(s) | 872 |
| BsrGI | TGTACA | 1 cut(s) | 1152 |
| BsrI | ACTGG | 2 cut(s) | 699, 1433 |
| BssECI | CCNNGG | 2 cut(s) | 643, 1018 |
| BssMI | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| BssNI | GRCGYC | 1 cut(s) | 1136 |
| Bst2UI | CCWGG | 1 cut(s) | 644 |
| Bst4CI | ACNGT | 3 cut(s) | 707, 860, 1392 |
| Bst6I | CTCTTC | 4 cut(s) | 145, 294, 1284, 1515 |
| BstACI | GRCGYC | 1 cut(s) | 1136 |
| BstAFI | CTTAAG | 1 cut(s) | 872 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 545 |
| BstAUI | TGTACA | 1 cut(s) | 1152 |
| BstBAI | YACGTR | 1 cut(s) | 629 |
| BstC8I | GCNNGC | 2 cut(s) | 1106, 1533 |
| BstDEI | CTNAG | 4 cut(s) | 63, 580, 1109, 1417 |
| BstF5I | GGATG | 3 cut(s) | 781, 907, 1544 |
| BstFNI | CGCG | 1 cut(s) | 30 |
| BstKTI | GATC | 5 cut(s) | 441, 735, 1328, 1527, 1642 |
| BstMAI | GTCTC | 1 cut(s) | 1622 |
| BstMBI | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 212, 369, 545, 1166, 1379 |
| BstNI | CCWGG | 1 cut(s) | 644 |
| BstNSI | RCATGY | 4 cut(s) | 97, 884, 1108, 1306 |
| BstSCI | CCNGG | 1 cut(s) | 642 |
| BstSFI | CTRYAG | 2 cut(s) | 736, 1099 |
| BstUI | CGCG | 1 cut(s) | 30 |
| BstV1I | GCAGC | 3 cut(s) | 722, 1132, 1391 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1650 |
| BsuI | GTATCC | 2 cut(s) | 80, 410 |
| BtsCI | GGATG | 3 cut(s) | 781, 907, 1544 |
| BtsIMutI | CAGTG | 2 cut(s) | 706, 1014 |
| BtuMI | TCGCGA | 1 cut(s) | 30 |
| Cac8I | GCNNGC | 2 cut(s) | 1106, 1533 |
| CaiI | CAGNNNCTG | 1 cut(s) | 705 |
| Cfr13I | GGNCC | 2 cut(s) | 314, 679 |
| CseI | GACGC | 1 cut(s) | 1144 |
| Csp6I | GTAC | 2 cut(s) | 1153, 1412 |
| CviAII | CATG | 8 cut(s) | 94, 340, 881, 1105, 1150, 1303, 1357, 1487 |
| CviQI | GTAC | 2 cut(s) | 1153, 1412 |
| DdeI | CTNAG | 4 cut(s) | 63, 580, 1109, 1417 |
| DpnI | GATC | 5 cut(s) | 440, 734, 1327, 1526, 1641 |
| DpnII | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| DraI | TTTAAA | 3 cut(s) | 637, 694, 793 |
| DraIII | CACNNNGTG | 1 cut(s) | 545 |
| Eam1104I | CTCTTC | 4 cut(s) | 145, 294, 1284, 1515 |
| EarI | CTCTTC | 4 cut(s) | 145, 294, 1284, 1515 |
| Ecl136II | GAGCTC | 1 cut(s) | 472 |
| Eco24I | GRGCYC | 1 cut(s) | 474 |
| Eco47I | GGWCC | 2 cut(s) | 314, 679 |
| Eco53kI | GAGCTC | 1 cut(s) | 472 |
| Eco57I | CTGAAG | 1 cut(s) | 1308 |
| EcoICRI | GAGCTC | 1 cut(s) | 472 |
| EcoO109I | RGGNCCY | 1 cut(s) | 679 |
| EcoRI | GAATTC | 2 cut(s) | 1332, 1428 |
| EcoRII | CCWGG | 1 cut(s) | 642 |
| EcoT22I | ATGCAT | 4 cut(s) | 181, 197, 1375, 1507 |
| EcoT38I | GRGCYC | 1 cut(s) | 474 |
| FaeI | CATG | 8 cut(s) | 97, 343, 884, 1108, 1153, 1306, 1360, 1490 |
| FaqI | GGGAC | 1 cut(s) | 127 |
| FatI | CATG | 8 cut(s) | 93, 339, 880, 1104, 1149, 1302, 1356, 1486 |
| FauI | CCCGC | 1 cut(s) | 300 |
| FauNDI | CATATG | 5 cut(s) | 243, 310, 838, 1375, 1516 |
| FblI | GTMKAC | 1 cut(s) | 90 |
| Fnu4HI | GCNGC | 4 cut(s) | 13, 711, 1146, 1380 |
| FokI | GGATG | 3 cut(s) | 788, 914, 1551 |
| FriOI | GRGCYC | 1 cut(s) | 474 |
| Fsp4HI | GCNGC | 4 cut(s) | 13, 711, 1146, 1380 |
| FspBI | CTAG | 3 cut(s) | 110, 207, 963 |
| GluI | GCNGC | 4 cut(s) | 13, 711, 1146, 1380 |
| HapII | CCGG | 3 cut(s) | 556, 614, 1197 |
| HgaI | GACGC | 1 cut(s) | 1144 |
| Hin1I | GRCGYC | 1 cut(s) | 1136 |
| Hin1II | CATG | 8 cut(s) | 97, 343, 884, 1108, 1153, 1306, 1360, 1490 |
| HincII | GTYRAC | 1 cut(s) | 91 |
| HindII | GTYRAC | 1 cut(s) | 91 |
| HindIII | AAGCTT | 1 cut(s) | 845 |
| HinfI | GANTC | 4 cut(s) | 444, 463, 662, 1247 |
| HpaII | CCGG | 3 cut(s) | 556, 614, 1197 |
| HphI | GGTGA | 3 cut(s) | 603, 829, 986 |
| Hpy166II | GTNNAC | 5 cut(s) | 91, 505, 869, 994, 1388 |
| Hpy188I | TCNGA | 8 cut(s) | 443, 759, 913, 1181, 1269, 1288, 1501, 1591 |
| Hpy188III | TCNNGA | 9 cut(s) | 29, 218, 323, 408, 467, 686, 890, 1051, 1329 |
| Hpy8I | GTNNAC | 5 cut(s) | 91, 505, 869, 994, 1388 |
| HpyAV | CCTTC | 8 cut(s) | 271, 556, 642, 670, 692, 834, 1075, 1592 |
| HpyCH4III | ACNGT | 3 cut(s) | 707, 860, 1392 |
| HpyCH4IV | ACGT | 1 cut(s) | 628 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 212, 369, 545, 1166, 1379 |
| HpyF3I | CTNAG | 4 cut(s) | 63, 580, 1109, 1417 |
| HpySE526I | ACGT | 1 cut(s) | 628 |
| Hsp92I | GRCGYC | 1 cut(s) | 1136 |
| Hsp92II | CATG | 8 cut(s) | 97, 343, 884, 1108, 1153, 1306, 1360, 1490 |
| Kzo9I | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| LmnI | GCTCC | 4 cut(s) | 203, 220, 657, 1549 |
| Lsp1109I | GCAGC | 3 cut(s) | 722, 1132, 1391 |
| LweI | GCATC | 4 cut(s) | 182, 1490, 1492, 1529 |
| MaeI | CTAG | 3 cut(s) | 110, 207, 963 |
| MaeII | ACGT | 1 cut(s) | 628 |
| MaeIII | GTNAC | 6 cut(s) | 491, 551, 701, 817, 977, 1339 |
| MalI | GATC | 5 cut(s) | 440, 734, 1327, 1526, 1641 |
| MboI | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| MboII | GAAGA | 7 cut(s) | 162, 311, 1198, 1301, 1325, 1532, 1607 |
| MfeI | CAATTG | 1 cut(s) | 1493 |
| MhlI | GDGCHC | 2 cut(s) | 474, 1581 |
| MlyI | GAGTC | 2 cut(s) | 453, 671 |
| MmeI | TCCRAC | 1 cut(s) | 211 |
| Mph1103I | ATGCAT | 4 cut(s) | 181, 197, 1375, 1507 |
| MslI | CAYNNNNRTG | 2 cut(s) | 344, 1301 |
| MspA1I | CMGCKG | 1 cut(s) | 1145 |
| MspCI | CTTAAG | 1 cut(s) | 872 |
| MspI | CCGG | 3 cut(s) | 556, 614, 1197 |
| MspR9I | CCNGG | 1 cut(s) | 644 |
| MunI | CAATTG | 1 cut(s) | 1493 |
| Mva1269I | GAATGC | 1 cut(s) | 753 |
| MvaI | CCWGG | 1 cut(s) | 644 |
| MvnI | CGCG | 1 cut(s) | 30 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 212, 369, 545, 1166, 1379 |
| NdeI | CATATG | 5 cut(s) | 243, 310, 838, 1375, 1516 |
| NdeII | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| NlaIII | CATG | 8 cut(s) | 97, 343, 884, 1108, 1153, 1306, 1360, 1490 |
| NlaIV | GGNNCC | 3 cut(s) | 653, 1096, 1551 |
| NmeAIII | GCCGAG | 2 cut(s) | 398, 1043 |
| NmuCI | GTSAC | 4 cut(s) | 551, 701, 817, 977 |
| NruI | TCGCGA | 1 cut(s) | 30 |
| NsiI | ATGCAT | 4 cut(s) | 181, 197, 1375, 1507 |
| NspI | RCATGY | 4 cut(s) | 97, 884, 1108, 1306 |
| PaeI | GCATGC | 1 cut(s) | 1108 |
| PciI | ACATGT | 2 cut(s) | 93, 1302 |
| PctI | GAATGC | 1 cut(s) | 753 |
| PfeI | GAWTC | 2 cut(s) | 463, 1247 |
| PkrI | GCNGC | 4 cut(s) | 14, 712, 1147, 1381 |
| PleI | GAGTC | 2 cut(s) | 452, 670 |
| PpsI | GAGTC | 2 cut(s) | 452, 670 |
| Ppu21I | YACGTR | 1 cut(s) | 629 |
| PpuMI | RGGWCCY | 1 cut(s) | 679 |
| PscI | ACATGT | 2 cut(s) | 93, 1302 |
| PsiI | TTATAA | 2 cut(s) | 1565, 1681 |
| Psp124BI | GAGCTC | 1 cut(s) | 474 |
| Psp5II | RGGWCCY | 1 cut(s) | 679 |
| Psp6I | CCWGG | 1 cut(s) | 642 |
| PspGI | CCWGG | 1 cut(s) | 642 |
| PspN4I | GGNNCC | 3 cut(s) | 653, 1096, 1551 |
| PspPI | GGNCC | 2 cut(s) | 314, 679 |
| PspPPI | RGGWCCY | 1 cut(s) | 679 |
| PstNI | CAGNNNCTG | 1 cut(s) | 705 |
| PvuII | CAGCTG | 1 cut(s) | 1145 |
| RruI | TCGCGA | 1 cut(s) | 30 |
| RsaI | GTAC | 2 cut(s) | 1154, 1413 |
| RsaNI | GTAC | 2 cut(s) | 1153, 1412 |
| RseI | CAYNNNNRTG | 2 cut(s) | 344, 1301 |
| SacI | GAGCTC | 1 cut(s) | 474 |
| SalI | GTCGAC | 1 cut(s) | 89 |
| SatI | GCNGC | 4 cut(s) | 13, 711, 1146, 1380 |
| Sau3AI | GATC | 5 cut(s) | 438, 732, 1325, 1524, 1639 |
| Sau96I | GGNCC | 2 cut(s) | 314, 679 |
| SchI | GAGTC | 2 cut(s) | 453, 671 |
| ScrFI | CCNGG | 1 cut(s) | 644 |
| SduI | GDGCHC | 2 cut(s) | 474, 1581 |
| SfaNI | GCATC | 4 cut(s) | 182, 1490, 1492, 1529 |
| SfcI | CTRYAG | 2 cut(s) | 736, 1099 |
| SinI | GGWCC | 2 cut(s) | 314, 679 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 344, 1301 |
| SmlI | CTYRAG | 5 cut(s) | 812, 872, 890, 1625, 1666 |
| SmoI | CTYRAG | 5 cut(s) | 812, 872, 890, 1625, 1666 |
| SphI | GCATGC | 1 cut(s) | 1108 |
| SsiI | CCGC | 4 cut(s) | 13, 293, 767, 864 |
| SspMI | CTAG | 3 cut(s) | 110, 207, 963 |
| SstI | GAGCTC | 1 cut(s) | 474 |
| StyD4I | CCNGG | 1 cut(s) | 642 |
| TaaI | ACNGT | 3 cut(s) | 707, 860, 1392 |
| TaiI | ACGT | 1 cut(s) | 631 |
| TaqI | TCGA | 3 cut(s) | 90, 932, 1575 |
| TatI | WGTACW | 1 cut(s) | 1152 |
| TauI | GCSGC | 1 cut(s) | 15 |
| TfiI | GAWTC | 2 cut(s) | 463, 1247 |
| TscAI | CASTG | 2 cut(s) | 706, 1014 |
| TseFI | GTSAC | 4 cut(s) | 551, 701, 817, 977 |
| TseI | GCWGC | 3 cut(s) | 710, 1145, 1379 |
| Tsp45I | GTSAC | 4 cut(s) | 551, 701, 817, 977 |
| TspGWI | ACGGA | 2 cut(s) | 62, 306 |
| TspRI | CASTG | 2 cut(s) | 706, 1014 |
| Vha464I | CTTAAG | 1 cut(s) | 872 |
| VpaK11BI | GGWCC | 2 cut(s) | 314, 679 |
| XapI | RAATTY | 8 cut(s) | 261, 689, 760, 788, 999, 1129, 1332, 1428 |
| XceI | RCATGY | 4 cut(s) | 97, 884, 1108, 1306 |
| XmiI | GTMKAC | 1 cut(s) | 90 |
| XspI | CTAG | 3 cut(s) | 110, 207, 963 |
| Zsp2I | ATGCAT | 4 cut(s) | 181, 197, 1375, 1507 |