Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Forward (+)

15631914 .. 15632941

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACTGCCCGGAATACCCTCGTCATTGTCACTCGCTTCGCCATCAACTTCAAACCTTCCTCCTCCACCGCCGCCCGAGAATCCGTCGTTGAGACAGCTCTCAAACTCCCCGCTTCCGAAGATTCGACTGGGCAGCTCTCCGTATGGTCGATACTGAACAGTGGCACTGCTTCTGATCTCCAGGAAACCGATGATGCAGAATCGTTGGAGAAGGAAAGCGACTTACCGTGGTTTTCAATAGCATTATTGCAGCGCAGCAAAGTAGTTACTCATGAAAGGAAGAGTAGGCATTGTTTCGGCGACAAGCAGGTGGCTTTCGGAATTTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAAATATGGTCCGTTTCTTGAATATCTTATTGACATGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

136

Amino Acids

15.14

Weight (kDa)

5.41

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	298
AciI	CCGC	4 cut(s)	69, 72, 111, 353
AcsI	RAATTY	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	52, 237, 359, 385
AjnI	CCWGG	1 cut(s)	180
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	2 cut(s)	98, 136
AluI	AGCT	2 cut(s)	98, 136
Alw26I	GTCTC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	133, 250, 255
ApoI	RAATTY	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	145, 262, 267
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	72, 134, 251, 256
BlsI	GCNGC	4 cut(s)	73, 135, 252, 257
Bme1390I	CCNGG	2 cut(s)	10, 182
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	2 cut(s)	10, 182
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	145, 262, 267
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	4 cut(s)	69, 72, 111, 353
BspHI	TCATGA	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	161, 228
Bst6I	CTCTTC	2 cut(s)	275, 354
BstDSI	CCRYGG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	8, 180
BstV1I	GCAGC	3 cut(s)	145, 262, 267
BtgI	CCRYGG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	165, 166
BveI	ACCTGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	2 cut(s)	272, 399
CviJI	RGCY	3 cut(s)	98, 136, 314
CviKI_1	RGCY	3 cut(s)	98, 136, 314
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	275, 354
EarI	CTCTTC	2 cut(s)	275, 354
Eco47I	GGWCC	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	275, 402
FaiI	YATR	5 cut(s)	145, 273, 371, 400, 406
FatI	CATG	2 cut(s)	271, 398
FauI	CCCGC	2 cut(s)	118, 360
Fnu4HI	GCNGC	4 cut(s)	72, 134, 251, 256
Fsp4HI	GCNGC	4 cut(s)	72, 134, 251, 256
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	4 cut(s)	72, 134, 251, 256
GsuI	CTGGAG	1 cut(s)	164
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	275, 402
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	80, 122, 200
HpaII	CCGG	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	118, 175, 320
Hpy188III	TCNNGA	2 cut(s)	272, 382
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	66, 205, 331
HpyCH4III	ACNGT	2 cut(s)	161, 228
HpyCH4V	TGCA	2 cut(s)	197, 250
Hsp92II	CATG	2 cut(s)	275, 402
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	23, 114, 167, 194, 293, 329
Lsp1109I	GCAGC	3 cut(s)	145, 262, 267
LweI	GCATC	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	28, 265
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	3 cut(s)	131, 292, 371
MluCI	AATT	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	29, 70, 73, 355
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	403
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	2 cut(s)	10, 182
MvaI	CCWGG	1 cut(s)	182
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	275, 402
NmuCI	GTSAC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	298
PfeI	GAWTC	3 cut(s)	80, 122, 200
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	4 cut(s)	73, 135, 252, 257
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	4 cut(s)	72, 134, 251, 256
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	10, 182
SetI	ASST	4 cut(s)	58, 100, 138, 312
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	403
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	4 cut(s)	69, 72, 111, 353
StyD4I	CCNGG	2 cut(s)	8, 180
TaaI	ACNGT	2 cut(s)	161, 228
TaqI	TCGA	2 cut(s)	125, 149
TasI	AATT	1 cut(s)	321
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	80, 122, 200
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	166, 172
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	133, 250, 255
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	288, 350
TspGWI	ACGGA	3 cut(s)	73, 130, 365
TspRI	CASTG	2 cut(s)	166, 172
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.