Rorug05G0165400

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
15307178 .. 15307969
792 bp
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UTR
Exon/CDS
Intron
Rorug05G0165400.1

Sequence Viewer

Length: 792 bp
ATGGACAGCAATTCGAGTCATTGGATGCAACATACAAGTTCTACAATGATTATGCATTTAAGGCTGGATTTAGTGTTAGGAAAAAGTAAGGAGACGAAGAGGAAGGAAATAGTATATTGGAAACAATATGTTTGTTCTAAAGAAGGGGAAACTGATGAGACATGGAGAAAAACAAATGAAATTGAGGAAAGAGATCGAGGGAAGACTCGAACATGGTGCAATGCAAAATTAACCGTATGTAATGATGGAAGTAATTATGTGGTCAAGACTTTCAATGAGGAACACAACCATCCCCCAACAACACCAAGCAAAGTTCATTTGTTAAGATCACAGCGTACTGTGTCTACTGCAAAAAAGAATCTGATACAAGACTTGAGGCGGGTGGACATTCCTATATACCAGCAATTTGAATTATTCCAGACACAAGCTGGTGGGCATGCAAATGTTTGCTGCACTGAGAGAGATTTAAGAAATGTGGTGCGAGATGAGAGAGAAGAAGTCAAGGGTCATGATGTTGACATTTTATATGAGCACTTCAAAGCTGAGCAAGAGAAGGATCCAGATTTCTTTTTTGAATTTTATACGGATGAAGAAAACAGGCTTCTCAGATGTTTCTGGATTGATTCAATTGGAAAAAAATCATATACATATTTTGGTGATGTGGTTGTATTTGATACAACATACAACACTAATCGTTATAAGATGATTTTTGCTCCAATAGTAGGTGTGAACCACCATGGGCAAACCATTATTTTTGGATGTGCATTTTTGAGCGATGAGACCTTTGATTAG

Protein Analysis

263

Amino Acids

31.03

Weight (kDa)

6.14

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 28 - 98 1e-10 FAR1 DNA-binding domain
MULE PF10551 221 - 261 5.4e-11 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000531)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AccI GTMKAC 1 cut(s) 344
AciI CCGC 1 cut(s) 379
AclWI GGATC 2 cut(s) 551, 564
AcsI RAATTY 1 cut(s) 575
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 722
AgsI TTSAA 5 cut(s) 274, 410, 538, 575, 627
AluBI AGCT 2 cut(s) 428, 542
AluI AGCT 2 cut(s) 428, 542
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 3 cut(s) 86, 152, 773
AlwI GGATC 2 cut(s) 551, 564
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 668
BamHI GGATCC 1 cut(s) 556
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 437
BccI CCATC 2 cut(s) 239, 297
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 3 cut(s) 86, 152, 773
BisI GCNGC 1 cut(s) 451
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 558
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 394
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 736
Bsc4I CCNNNNNNNGG 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 4 cut(s) 30, 289, 592, 764
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 447, 534, 619
BseXI GCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 534
BslI CCNNNNNNNGG 1 cut(s) 722
BsmAI GTCTC 3 cut(s) 86, 152, 773
BsmBI CGTCTC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 773
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 3 cut(s) 193, 326, 556
Bsp1720I GCTNAGC 1 cut(s) 543
Bsp19I CCATGG 1 cut(s) 736
BspACI CCGC 1 cut(s) 379
BspCNI CTCAG 3 cut(s) 448, 535, 618
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 558
BspPI GGATC 2 cut(s) 551, 564
BspTNI GGTCTC 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 3 cut(s) 193, 326, 556
BssT1I CCWWGG 1 cut(s) 736
Bst4CI ACNGT 2 cut(s) 235, 340
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 3 cut(s) 456, 543, 605
BstDSI CCRYGG 1 cut(s) 736
BstF5I GGATG 4 cut(s) 30, 289, 592, 764
BstKTI GATC 3 cut(s) 196, 329, 559
BstMAI GTCTC 3 cut(s) 86, 152, 773
BstMBI GATC 3 cut(s) 193, 326, 556
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BtgI CCRYGG 1 cut(s) 736
BtsCI GGATG 4 cut(s) 30, 289, 592, 764
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 1 cut(s) 438
CciI TCATGA 1 cut(s) 508
Csp6I GTAC 1 cut(s) 336
CviAII CATG 5 cut(s) 162, 213, 437, 509, 737
CviJI RGCY 4 cut(s) 64, 428, 542, 601
CviKI_1 RGCY 4 cut(s) 64, 428, 542, 601
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 3 cut(s) 456, 543, 605
DpnI GATC 3 cut(s) 195, 328, 558
DpnII GATC 3 cut(s) 193, 326, 556
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 773
EcoT14I CCWWGG 1 cut(s) 736
EcoT22I ATGCAT 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 736
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 5 cut(s) 165, 216, 440, 512, 740
FatI CATG 5 cut(s) 161, 212, 436, 508, 736
FauI CCCGC 1 cut(s) 372
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 4 cut(s) 37, 276, 599, 771
Fsp4HI GCNGC 1 cut(s) 451
GluI GCNGC 1 cut(s) 451
Hin1II CATG 5 cut(s) 165, 216, 440, 512, 740
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 4 cut(s) 16, 205, 358, 623
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 4 cut(s) 345, 385, 517, 730
Hpy188I TCNGA 2 cut(s) 363, 608
Hpy188III TCNNGA 5 cut(s) 265, 418, 509, 560, 616
Hpy8I GTNNAC 4 cut(s) 345, 385, 517, 730
HpyAV CCTTC 3 cut(s) 97, 137, 547
HpyCH4III ACNGT 2 cut(s) 235, 340
HpyCH4V TGCA 8 cut(s) 28, 55, 219, 224, 350, 440, 453, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 3 cut(s) 456, 543, 605
Hsp92II CATG 5 cut(s) 165, 216, 440, 512, 740
Kzo9I GATC 3 cut(s) 193, 326, 556
LmnI GCTCC 1 cut(s) 718
LpnPI CCDG 7 cut(s) 50, 413, 414, 431, 573, 583, 601
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 15
MalI GATC 3 cut(s) 195, 328, 558
MboI GATC 3 cut(s) 193, 326, 556
MboII GAAGA 4 cut(s) 109, 214, 506, 602
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 8 cut(s) 10, 180, 227, 253, 404, 410, 575, 627
MlyI GAGTC 2 cut(s) 25, 199
MnlI CCTC 5 cut(s) 93, 178, 191, 271, 369
Mph1103I ATGCAT 1 cut(s) 57
MseI TTAA 4 cut(s) 59, 230, 323, 467
MslI CAYNNNNRTG 1 cut(s) 441
MunI CAATTG 1 cut(s) 627
MwoI GCNNNNNNNGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 736
NdeII GATC 3 cut(s) 193, 326, 556
NlaIII CATG 5 cut(s) 165, 216, 440, 512, 740
NlaIV GGNNCC 1 cut(s) 558
NsiI ATGCAT 1 cut(s) 57
NspI RCATGY 1 cut(s) 440
PaeI GCATGC 1 cut(s) 440
PagI TCATGA 1 cut(s) 508
PfeI GAWTC 2 cut(s) 358, 623
PkrI GCNGC 1 cut(s) 452
PleI GAGTC 2 cut(s) 24, 199
PpsI GAGTC 2 cut(s) 24, 199
PsiI TTATAA 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 558
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 4 cut(s) 59, 230, 323, 467
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 3 cut(s) 193, 326, 556
SchI GAGTC 2 cut(s) 25, 199
SduI GDGCHC 1 cut(s) 534
SetI ASST 4 cut(s) 430, 544, 727, 785
SfaNI GCATC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SphI GCATGC 1 cut(s) 440
Sse9I AATT 8 cut(s) 10, 180, 227, 253, 404, 410, 575, 627
SsiI CCGC 1 cut(s) 379
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 2 cut(s) 235, 340
TaqI TCGA 3 cut(s) 14, 196, 208
TasI AATT 8 cut(s) 10, 180, 227, 253, 404, 410, 575, 627
TfiI GAWTC 2 cut(s) 358, 623
Tru1I TTAA 4 cut(s) 59, 230, 323, 467
Tru9I TTAA 4 cut(s) 59, 230, 323, 467
TscAI CASTG 1 cut(s) 460
TseI GCWGC 1 cut(s) 450
TspDTI ATGAA 3 cut(s) 192, 305, 603
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 1 cut(s) 460
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.