Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 368 - 530 | 5.5e-13 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 441 - 556 | 2.4e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 456 - 514 | 2.7e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 467 - 514 | 2.2e-10 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1826 |
| Acc36I | ACCTGC | 1 cut(s) | 1978 |
| AccB1I | GGYRCC | 1 cut(s) | 1355 |
| AccI | GTMKAC | 2 cut(s) | 351, 2075 |
| AccII | CGCG | 1 cut(s) | 291 |
| AciI | CCGC | 6 cut(s) | 165, 274, 554, 1028, 1125, 2229 |
| AclWI | GGATC | 4 cut(s) | 707, 1895, 2007, 2333 |
| AcuI | CTGAAG | 1 cut(s) | 1569 |
| AcyI | GRCGYC | 1 cut(s) | 1397 |
| AdeI | CACNNNGTG | 1 cut(s) | 806 |
| AfaI | GTAC | 5 cut(s) | 172, 1415, 1674, 2011, 2371 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 823 |
| AflII | CTTAAG | 2 cut(s) | 1133, 2251 |
| AflIII | ACRYGT | 2 cut(s) | 354, 1563 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1973 |
| AjnI | CCWGG | 2 cut(s) | 139, 903 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1598, 1630 |
| AleI | CACNNNNGTG | 1 cut(s) | 2172 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 534, 566 |
| Alw21I | GWGCWC | 2 cut(s) | 735, 1842 |
| Alw26I | GTCTC | 4 cut(s) | 24, 871, 1883, 2156 |
| AlwI | GGATC | 4 cut(s) | 707, 1895, 2007, 2333 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 966 |
| AoxI | GGCC | 2 cut(s) | 2092, 2128 |
| ApeKI | GCWGC | 6 cut(s) | 133, 971, 1406, 1640, 2285, 2303 |
| AspLEI | GCGC | 1 cut(s) | 273 |
| AspS9I | GGNCC | 3 cut(s) | 575, 940, 2293 |
| AsuHPI | GGTGA | 4 cut(s) | 864, 1090, 1247, 2125 |
| AvaII | GGWCC | 3 cut(s) | 575, 940, 2293 |
| BanI | GGYRCC | 1 cut(s) | 1355 |
| BanII | GRGCYC | 1 cut(s) | 735 |
| Bbv12I | GWGCWC | 2 cut(s) | 735, 1842 |
| BbvI | GCAGC | 6 cut(s) | 145, 983, 1393, 1652, 2290, 2297 |
| BccI | CCATC | 4 cut(s) | 752, 1189, 1533, 1913 |
| BceAI | ACGGC | 1 cut(s) | 1958 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 105, 139, 250, 284, 341, 375 |
| BciT130I | CCWGG | 2 cut(s) | 141, 905 |
| BciVI | GTATCC | 2 cut(s) | 341, 671 |
| BcoDI | GTCTC | 4 cut(s) | 24, 871, 1883, 2156 |
| BfaI | CTAG | 6 cut(s) | 129, 371, 468, 1224, 2027, 2096 |
| BfmI | CTRYAG | 2 cut(s) | 997, 1360 |
| BfrI | CTTAAG | 2 cut(s) | 1133, 2251 |
| BfuAI | ACCTGC | 1 cut(s) | 1978 |
| BfuI | GTATCC | 2 cut(s) | 341, 671 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2282 |
| BglII | AGATCT | 1 cut(s) | 2188 |
| BisI | GCNGC | 8 cut(s) | 134, 274, 972, 1407, 1641, 2229, 2286, 2304 |
| BlsI | GCNGC | 8 cut(s) | 135, 275, 973, 1408, 1642, 2230, 2287, 2305 |
| Bme1390I | CCNGG | 2 cut(s) | 141, 905 |
| Bme18I | GGWCC | 3 cut(s) | 575, 940, 2293 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1973 |
| BmgT120I | GGNCC | 3 cut(s) | 575, 940, 2293 |
| BmiI | GGNNCC | 4 cut(s) | 914, 1357, 1812, 2294 |
| BmrFI | CCNGG | 2 cut(s) | 141, 905 |
| BmsI | GCATC | 5 cut(s) | 190, 252, 443, 1751, 1753 |
| BpuEI | CTTGAG | 5 cut(s) | 1094, 1172, 1907, 1948, 2006 |
| Bsa29I | ATCGAT | 1 cut(s) | 195 |
| BsaAI | YACGTR | 1 cut(s) | 890 |
| BsaHI | GRCGYC | 1 cut(s) | 1397 |
| BsaI | GGTCTC | 1 cut(s) | 871 |
| BsaJI | CCNNGG | 5 cut(s) | 139, 140, 233, 904, 1279 |
| BsaWI | WCCGGW | 3 cut(s) | 816, 874, 1457 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 823 |
| Bse1I | ACTGG | 2 cut(s) | 960, 1694 |
| Bse3DI | GCAATG | 1 cut(s) | 266 |
| BseBI | CCWGG | 2 cut(s) | 141, 905 |
| BseCI | ATCGAT | 1 cut(s) | 195 |
| BseDI | CCNNGG | 5 cut(s) | 139, 140, 233, 904, 1279 |
| BseGI | GGATG | 3 cut(s) | 1042, 1168, 2271 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 823 |
| BseMI | GCAATG | 1 cut(s) | 266 |
| BseMII | CTCAG | 4 cut(s) | 50, 338, 1361, 2008 |
| BseNI | ACTGG | 2 cut(s) | 960, 1694 |
| BseRI | GAGGAG | 1 cut(s) | 1868 |
| BseXI | GCAGC | 6 cut(s) | 145, 983, 1393, 1652, 2290, 2297 |
| BsgI | GTGCAG | 1 cut(s) | 990 |
| Bsh1236I | CGCG | 1 cut(s) | 291 |
| BshFI | GGCC | 2 cut(s) | 2094, 2130 |
| BshNI | GGYRCC | 1 cut(s) | 1355 |
| BshVI | ATCGAT | 1 cut(s) | 195 |
| BsiHKAI | GWGCWC | 2 cut(s) | 735, 1842 |
| BsiSI | CCGG | 3 cut(s) | 817, 875, 1458 |
| BslFI | GGGAC | 4 cut(s) | 158, 388, 2306, 2331 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 823 |
| BsmAI | GTCTC | 4 cut(s) | 24, 871, 1883, 2156 |
| BsmBI | CGTCTC | 1 cut(s) | 24 |
| BsmFI | GGGAC | 4 cut(s) | 158, 388, 2306, 2331 |
| BsmI | GAATGC | 3 cut(s) | 118, 1014, 1805 |
| BsnI | GGCC | 2 cut(s) | 2094, 2130 |
| Bso31I | GGTCTC | 1 cut(s) | 871 |
| Bsp1286I | GDGCHC | 2 cut(s) | 735, 1842 |
| Bsp1407I | TGTACA | 2 cut(s) | 1413, 2369 |
| Bsp143I | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| Bsp19I | CCATGG | 1 cut(s) | 233 |
| Bsp68I | TCGCGA | 1 cut(s) | 291 |
| BspACI | CCGC | 6 cut(s) | 165, 274, 554, 1028, 1125, 2229 |
| BspANI | GGCC | 2 cut(s) | 2094, 2130 |
| BspCNI | CTCAG | 4 cut(s) | 51, 337, 1362, 2007 |
| BspDI | ATCGAT | 1 cut(s) | 195 |
| BspFNI | CGCG | 1 cut(s) | 291 |
| BspLI | GGNNCC | 4 cut(s) | 914, 1357, 1812, 2294 |
| BspMI | ACCTGC | 1 cut(s) | 1978 |
| BspPI | GGATC | 4 cut(s) | 707, 1895, 2007, 2333 |
| BspT107I | GGYRCC | 1 cut(s) | 1355 |
| BspTI | CTTAAG | 2 cut(s) | 1133, 2251 |
| BspTNI | GGTCTC | 1 cut(s) | 871 |
| BsrDI | GCAATG | 1 cut(s) | 266 |
| BsrGI | TGTACA | 2 cut(s) | 1413, 2369 |
| BsrI | ACTGG | 2 cut(s) | 960, 1694 |
| BssECI | CCNNGG | 5 cut(s) | 139, 140, 233, 904, 1279 |
| BssMI | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| BssNI | GRCGYC | 1 cut(s) | 1397 |
| BssT1I | CCWWGG | 1 cut(s) | 233 |
| Bst2UI | CCWGG | 2 cut(s) | 141, 905 |
| Bst4CI | ACNGT | 4 cut(s) | 162, 968, 1121, 1653 |
| Bst6I | CTCTTC | 5 cut(s) | 406, 555, 1545, 1776, 2111 |
| BstACI | GRCGYC | 1 cut(s) | 1397 |
| BstAFI | CTTAAG | 2 cut(s) | 1133, 2251 |
| BstAUI | TGTACA | 2 cut(s) | 1413, 2369 |
| BstBAI | YACGTR | 1 cut(s) | 890 |
| BstC8I | GCNNGC | 4 cut(s) | 1367, 1794, 2233, 2237 |
| BstDEI | CTNAG | 5 cut(s) | 59, 324, 1370, 1678, 1994 |
| BstDSI | CCRYGG | 1 cut(s) | 233 |
| BstF5I | GGATG | 3 cut(s) | 1042, 1168, 2271 |
| BstFNI | CGCG | 1 cut(s) | 291 |
| BstHHI | GCGC | 1 cut(s) | 273 |
| BstKTI | GATC | 8 cut(s) | 702, 996, 1589, 1788, 1903, 2002, 2191, 2341 |
| BstMAI | GTCTC | 4 cut(s) | 24, 871, 1883, 2156 |
| BstMBI | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 473, 630, 1427, 1640, 2282 |
| BstNI | CCWGG | 2 cut(s) | 141, 905 |
| BstNSI | RCATGY | 4 cut(s) | 358, 1145, 1369, 1567 |
| BstSCI | CCNGG | 2 cut(s) | 139, 903 |
| BstSFI | CTRYAG | 2 cut(s) | 997, 1360 |
| BstUI | CGCG | 1 cut(s) | 291 |
| BstV1I | GCAGC | 6 cut(s) | 145, 983, 1393, 1652, 2290, 2297 |
| BstX2I | RGATCY | 1 cut(s) | 2188 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1911 |
| BstYI | RGATCY | 1 cut(s) | 2188 |
| Bsu15I | ATCGAT | 1 cut(s) | 195 |
| BsuI | GTATCC | 2 cut(s) | 341, 671 |
| BsuRI | GGCC | 2 cut(s) | 2094, 2130 |
| BsuTUI | ATCGAT | 1 cut(s) | 195 |
| BtgI | CCRYGG | 1 cut(s) | 233 |
| BtgZI | GCGATG | 1 cut(s) | 275 |
| BtsCI | GGATG | 3 cut(s) | 1042, 1168, 2271 |
| BtsI | GCAGTG | 1 cut(s) | 2178 |
| BtsIMutI | CAGTG | 5 cut(s) | 56, 967, 1275, 2178, 2372 |
| BtuMI | TCGCGA | 1 cut(s) | 291 |
| BveI | ACCTGC | 1 cut(s) | 1978 |
| Cac8I | GCNNGC | 4 cut(s) | 1367, 1794, 2233, 2237 |
| CaiI | CAGNNNCTG | 1 cut(s) | 966 |
| CfoI | GCGC | 1 cut(s) | 273 |
| Cfr13I | GGNCC | 3 cut(s) | 575, 940, 2293 |
| ClaI | ATCGAT | 1 cut(s) | 195 |
| CseI | GACGC | 1 cut(s) | 1405 |
| Csp6I | GTAC | 5 cut(s) | 171, 1414, 1673, 2010, 2370 |
| CviQI | GTAC | 5 cut(s) | 171, 1414, 1673, 2010, 2370 |
| DdeI | CTNAG | 5 cut(s) | 59, 324, 1370, 1678, 1994 |
| DpnI | GATC | 8 cut(s) | 701, 995, 1588, 1787, 1902, 2001, 2190, 2340 |
| DpnII | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| DraI | TTTAAA | 3 cut(s) | 898, 955, 1054 |
| DraIII | CACNNNGTG | 1 cut(s) | 806 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1973 |
| Eam1104I | CTCTTC | 5 cut(s) | 406, 555, 1545, 1776, 2111 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1973 |
| EarI | CTCTTC | 5 cut(s) | 406, 555, 1545, 1776, 2111 |
| Ecl136II | GAGCTC | 1 cut(s) | 733 |
| Eco130I | CCWWGG | 1 cut(s) | 233 |
| Eco24I | GRGCYC | 1 cut(s) | 735 |
| Eco31I | GGTCTC | 1 cut(s) | 871 |
| Eco47I | GGWCC | 3 cut(s) | 575, 940, 2293 |
| Eco53kI | GAGCTC | 1 cut(s) | 733 |
| Eco57I | CTGAAG | 1 cut(s) | 1569 |
| EcoICRI | GAGCTC | 1 cut(s) | 733 |
| EcoO109I | RGGNCCY | 1 cut(s) | 940 |
| EcoRI | GAATTC | 2 cut(s) | 1593, 1689 |
| EcoRII | CCWGG | 2 cut(s) | 139, 903 |
| EcoT14I | CCWWGG | 1 cut(s) | 233 |
| EcoT22I | ATGCAT | 4 cut(s) | 442, 458, 1636, 1768 |
| EcoT38I | GRGCYC | 1 cut(s) | 735 |
| ErhI | CCWWGG | 1 cut(s) | 233 |
| Esp3I | CGTCTC | 1 cut(s) | 24 |
| FaqI | GGGAC | 4 cut(s) | 158, 388, 2306, 2331 |
| FauI | CCCGC | 1 cut(s) | 561 |
| FauNDI | CATATG | 5 cut(s) | 504, 571, 1099, 1636, 1777 |
| FblI | GTMKAC | 2 cut(s) | 351, 2075 |
| Fnu4HI | GCNGC | 8 cut(s) | 134, 274, 972, 1407, 1641, 2229, 2286, 2304 |
| FokI | GGATG | 3 cut(s) | 1049, 1175, 2278 |
| FriOI | GRGCYC | 1 cut(s) | 735 |
| Fsp4HI | GCNGC | 8 cut(s) | 134, 274, 972, 1407, 1641, 2229, 2286, 2304 |
| FspBI | CTAG | 6 cut(s) | 129, 371, 468, 1224, 2027, 2096 |
| GlaI | GCGC | 1 cut(s) | 272 |
| GluI | GCNGC | 8 cut(s) | 134, 274, 972, 1407, 1641, 2229, 2286, 2304 |
| HaeIII | GGCC | 2 cut(s) | 2094, 2130 |
| HapII | CCGG | 3 cut(s) | 817, 875, 1458 |
| HgaI | GACGC | 1 cut(s) | 1405 |
| HhaI | GCGC | 1 cut(s) | 273 |
| Hin1I | GRCGYC | 1 cut(s) | 1397 |
| Hin6I | GCGC | 1 cut(s) | 271 |
| HinP1I | GCGC | 1 cut(s) | 271 |
| HincII | GTYRAC | 1 cut(s) | 352 |
| HindII | GTYRAC | 1 cut(s) | 352 |
| HindIII | AAGCTT | 2 cut(s) | 1106, 2254 |
| HinfI | GANTC | 9 cut(s) | 122, 206, 705, 724, 923, 1508, 2066, 2072, 2363 |
| HpaII | CCGG | 3 cut(s) | 817, 875, 1458 |
| HphI | GGTGA | 4 cut(s) | 864, 1090, 1247, 2125 |
| Hpy166II | GTNNAC | 7 cut(s) | 352, 766, 1130, 1255, 1649, 2076, 2372 |
| Hpy188I | TCNGA | 8 cut(s) | 704, 1020, 1174, 1442, 1549, 1762, 1852, 2071 |
| Hpy8I | GTNNAC | 7 cut(s) | 352, 766, 1130, 1255, 1649, 2076, 2372 |
| HpyCH4III | ACNGT | 4 cut(s) | 162, 968, 1121, 1653 |
| HpyCH4IV | ACGT | 2 cut(s) | 889, 2320 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 473, 630, 1427, 1640, 2282 |
| HpyF3I | CTNAG | 5 cut(s) | 59, 324, 1370, 1678, 1994 |
| HpySE526I | ACGT | 2 cut(s) | 889, 2320 |
| Hsp92I | GRCGYC | 1 cut(s) | 1397 |
| HspAI | GCGC | 1 cut(s) | 271 |
| Kzo9I | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| LmnI | GCTCC | 5 cut(s) | 141, 464, 481, 918, 1810 |
| Lsp1109I | GCAGC | 6 cut(s) | 145, 983, 1393, 1652, 2290, 2297 |
| LweI | GCATC | 5 cut(s) | 190, 252, 443, 1751, 1753 |
| MaeI | CTAG | 6 cut(s) | 129, 371, 468, 1224, 2027, 2096 |
| MaeII | ACGT | 2 cut(s) | 889, 2320 |
| MaeIII | GTNAC | 8 cut(s) | 752, 812, 962, 1078, 1238, 1600, 1952, 2176 |
| MalI | GATC | 8 cut(s) | 701, 995, 1588, 1787, 1902, 2001, 2190, 2340 |
| MboI | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| MfeI | CAATTG | 1 cut(s) | 1754 |
| MflI | RGATCY | 1 cut(s) | 2188 |
| MhlI | GDGCHC | 2 cut(s) | 735, 1842 |
| MlyI | GAGTC | 3 cut(s) | 714, 932, 2081 |
| MmeI | TCCRAC | 1 cut(s) | 472 |
| Mph1103I | ATGCAT | 4 cut(s) | 442, 458, 1636, 1768 |
| MslI | CAYNNNNRTG | 4 cut(s) | 605, 1562, 2146, 2172 |
| MspA1I | CMGCKG | 2 cut(s) | 1406, 2231 |
| MspCI | CTTAAG | 2 cut(s) | 1133, 2251 |
| MspI | CCGG | 3 cut(s) | 817, 875, 1458 |
| MspR9I | CCNGG | 2 cut(s) | 141, 905 |
| MunI | CAATTG | 1 cut(s) | 1754 |
| Mva1269I | GAATGC | 3 cut(s) | 118, 1014, 1805 |
| MvaI | CCWGG | 2 cut(s) | 141, 905 |
| MvnI | CGCG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 473, 630, 1427, 1640, 2282 |
| NcoI | CCATGG | 1 cut(s) | 233 |
| NdeI | CATATG | 5 cut(s) | 504, 571, 1099, 1636, 1777 |
| NdeII | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| NlaIV | GGNNCC | 4 cut(s) | 914, 1357, 1812, 2294 |
| NmeAIII | GCCGAG | 2 cut(s) | 659, 1304 |
| NmuCI | GTSAC | 5 cut(s) | 812, 962, 1078, 1238, 2176 |
| NruI | TCGCGA | 1 cut(s) | 291 |
| NsiI | ATGCAT | 4 cut(s) | 442, 458, 1636, 1768 |
| NspI | RCATGY | 4 cut(s) | 358, 1145, 1369, 1567 |
| OliI | CACNNNNGTG | 1 cut(s) | 2172 |
| PaeI | GCATGC | 1 cut(s) | 1369 |
| PasI | CCCWGGG | 1 cut(s) | 140 |
| PciI | ACATGT | 2 cut(s) | 354, 1563 |
| PctI | GAATGC | 3 cut(s) | 118, 1014, 1805 |
| PfeI | GAWTC | 6 cut(s) | 122, 206, 724, 1508, 2066, 2363 |
| PkrI | GCNGC | 8 cut(s) | 135, 275, 973, 1408, 1642, 2230, 2287, 2305 |
| PleI | GAGTC | 3 cut(s) | 713, 931, 2080 |
| PpsI | GAGTC | 3 cut(s) | 713, 931, 2080 |
| Ppu21I | YACGTR | 1 cut(s) | 890 |
| PpuMI | RGGWCCY | 1 cut(s) | 940 |
| PscI | ACATGT | 2 cut(s) | 354, 1563 |
| PsiI | TTATAA | 1 cut(s) | 1826 |
| Psp124BI | GAGCTC | 1 cut(s) | 735 |
| Psp5II | RGGWCCY | 1 cut(s) | 940 |
| Psp6I | CCWGG | 2 cut(s) | 139, 903 |
| PspGI | CCWGG | 2 cut(s) | 139, 903 |
| PspN4I | GGNNCC | 4 cut(s) | 914, 1357, 1812, 2294 |
| PspPI | GGNCC | 3 cut(s) | 575, 940, 2293 |
| PspPPI | RGGWCCY | 1 cut(s) | 940 |
| PstNI | CAGNNNCTG | 1 cut(s) | 966 |
| PsuI | RGATCY | 1 cut(s) | 2188 |
| PvuII | CAGCTG | 1 cut(s) | 1406 |
| RruI | TCGCGA | 1 cut(s) | 291 |
| RsaI | GTAC | 5 cut(s) | 172, 1415, 1674, 2011, 2371 |
| RsaNI | GTAC | 5 cut(s) | 171, 1414, 1673, 2010, 2370 |
| RseI | CAYNNNNRTG | 4 cut(s) | 605, 1562, 2146, 2172 |
| SacI | GAGCTC | 1 cut(s) | 735 |
| SalI | GTCGAC | 1 cut(s) | 350 |
| SatI | GCNGC | 8 cut(s) | 134, 274, 972, 1407, 1641, 2229, 2286, 2304 |
| Sau3AI | GATC | 8 cut(s) | 699, 993, 1586, 1785, 1900, 1999, 2188, 2338 |
| Sau96I | GGNCC | 3 cut(s) | 575, 940, 2293 |
| SchI | GAGTC | 3 cut(s) | 714, 932, 2081 |
| ScrFI | CCNGG | 2 cut(s) | 141, 905 |
| SduI | GDGCHC | 2 cut(s) | 735, 1842 |
| SfaNI | GCATC | 5 cut(s) | 190, 252, 443, 1751, 1753 |
| SfcI | CTRYAG | 2 cut(s) | 997, 1360 |
| SinI | GGWCC | 3 cut(s) | 575, 940, 2293 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 605, 1562, 2146, 2172 |
| SmlI | CTYRAG | 7 cut(s) | 1073, 1133, 1151, 1886, 1927, 1985, 2251 |
| SmoI | CTYRAG | 7 cut(s) | 1073, 1133, 1151, 1886, 1927, 1985, 2251 |
| SphI | GCATGC | 1 cut(s) | 1369 |
| SsiI | CCGC | 6 cut(s) | 165, 274, 554, 1028, 1125, 2229 |
| SspMI | CTAG | 6 cut(s) | 129, 371, 468, 1224, 2027, 2096 |
| SstI | GAGCTC | 1 cut(s) | 735 |
| StyD4I | CCNGG | 2 cut(s) | 139, 903 |
| StyI | CCWWGG | 1 cut(s) | 233 |
| TaaI | ACNGT | 4 cut(s) | 162, 968, 1121, 1653 |
| TaiI | ACGT | 2 cut(s) | 892, 2323 |
| TaqI | TCGA | 6 cut(s) | 125, 195, 351, 1193, 1836, 2154 |
| TaqII | GACCGA | 2 cut(s) | 2310, 2340 |
| TatI | WGTACW | 3 cut(s) | 1413, 2009, 2369 |
| TauI | GCSGC | 2 cut(s) | 276, 2231 |
| TfiI | GAWTC | 6 cut(s) | 122, 206, 724, 1508, 2066, 2363 |
| TscAI | CASTG | 5 cut(s) | 63, 967, 1275, 2185, 2379 |
| TseFI | GTSAC | 5 cut(s) | 812, 962, 1078, 1238, 2176 |
| TseI | GCWGC | 6 cut(s) | 133, 971, 1406, 1640, 2285, 2303 |
| Tsp45I | GTSAC | 5 cut(s) | 812, 962, 1078, 1238, 2176 |
| TspGWI | ACGGA | 2 cut(s) | 323, 567 |
| TspRI | CASTG | 5 cut(s) | 63, 967, 1275, 2185, 2379 |
| Vha464I | CTTAAG | 2 cut(s) | 1133, 2251 |
| VpaK11BI | GGWCC | 3 cut(s) | 575, 940, 2293 |
| XbaI | TCTAGA | 1 cut(s) | 2026 |
| XceI | RCATGY | 4 cut(s) | 358, 1145, 1369, 1567 |
| XmiI | GTMKAC | 2 cut(s) | 351, 2075 |
| XspI | CTAG | 6 cut(s) | 129, 371, 468, 1224, 2027, 2096 |
| Zsp2I | ATGCAT | 4 cut(s) | 442, 458, 1636, 1768 |