Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 314 - 480 | 2.7e-11 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 374 - 425 | 9.2e-07 | Pentatricopeptide repeat domain |
| PPR_3 | PF13812 | 405 - 463 | 2.4e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 416 - 463 | 1.3e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1100, 1616 |
| Acc36I | ACCTGC | 1 cut(s) | 304 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 193 |
| AccBSI | CCGCTC | 1 cut(s) | 374 |
| AclWI | GGATC | 2 cut(s) | 1883, 1896 |
| AcsI | RAATTY | 8 cut(s) | 510, 865, 938, 1009, 1037, 1483, 1581, 2006 |
| AcuI | CTGAAG | 3 cut(s) | 387, 1106, 1557 |
| AcvI | CACGTG | 1 cut(s) | 382 |
| AcyI | GRCGYC | 1 cut(s) | 1385 |
| AfaI | GTAC | 3 cut(s) | 50, 1403, 1662 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 193, 811 |
| AflIII | ACRYGT | 2 cut(s) | 381, 1551 |
| Alw21I | GWGCWC | 1 cut(s) | 1830 |
| Alw26I | GTCTC | 2 cut(s) | 124, 1871 |
| AlwI | GGATC | 2 cut(s) | 1883, 1896 |
| ApeKI | GCWGC | 8 cut(s) | 104, 145, 479, 496, 1357, 1394, 1628, 1911 |
| ApoI | RAATTY | 8 cut(s) | 510, 865, 938, 1009, 1037, 1483, 1581, 2006 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 643, 711 |
| AspS9I | GGNCC | 1 cut(s) | 563 |
| AsuHPI | GGTGA | 4 cut(s) | 81, 852, 1078, 1235 |
| AvaII | GGWCC | 1 cut(s) | 563 |
| BamHI | GGATCC | 1 cut(s) | 1888 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1470, 1502 |
| BauI | CACGAG | 1 cut(s) | 276 |
| BbrPI | CACGTG | 1 cut(s) | 382 |
| Bbv12I | GWGCWC | 1 cut(s) | 1830 |
| BbvCI | CCTCAGC | 1 cut(s) | 67 |
| BbvI | GCAGC | 8 cut(s) | 91, 157, 466, 508, 1344, 1381, 1640, 1898 |
| BccI | CCATC | 5 cut(s) | 246, 740, 992, 1521, 1901 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 86, 120, 234, 268 |
| BcoDI | GTCTC | 2 cut(s) | 124, 1871 |
| BfaI | CTAG | 4 cut(s) | 359, 456, 1212, 1578 |
| BfmI | CTRYAG | 2 cut(s) | 480, 985 |
| BfuAI | ACCTGC | 1 cut(s) | 304 |
| BlpI | GCTNAGC | 1 cut(s) | 17 |
| Bme18I | GGWCC | 1 cut(s) | 563 |
| BmgT120I | GGNCC | 1 cut(s) | 563 |
| BmiI | GGNNCC | 3 cut(s) | 902, 1800, 1890 |
| BmrI | ACTGGG | 1 cut(s) | 1175 |
| BmsI | GCATC | 3 cut(s) | 160, 1739, 1778 |
| BmuI | ACTGGG | 1 cut(s) | 1175 |
| Bpu10I | CCTNAGC | 1 cut(s) | 67 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 17 |
| BpuEI | CTTGAG | 4 cut(s) | 1082, 1160, 1895, 1936 |
| BsaAI | YACGTR | 2 cut(s) | 382, 878 |
| BsaHI | GRCGYC | 1 cut(s) | 1385 |
| BsaJI | CCNNGG | 1 cut(s) | 892 |
| BsaWI | WCCGGW | 1 cut(s) | 804 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 193, 811 |
| Bse1I | ACTGG | 5 cut(s) | 325, 351, 412, 939, 1170 |
| BseDI | CCNNGG | 1 cut(s) | 892 |
| BseGI | GGATG | 3 cut(s) | 238, 1156, 1793 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 193, 811 |
| BseMII | CTCAG | 3 cut(s) | 31, 81, 459 |
| BseNI | ACTGG | 5 cut(s) | 325, 351, 412, 939, 1170 |
| BseRI | GAGGAG | 2 cut(s) | 168, 301 |
| BseXI | GCAGC | 8 cut(s) | 91, 157, 466, 508, 1344, 1381, 1640, 1898 |
| BseYI | CCCAGC | 1 cut(s) | 2035 |
| BsgI | GTGCAG | 2 cut(s) | 184, 978 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1830 |
| BsiSI | CCGG | 1 cut(s) | 805 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 193, 811 |
| BsmAI | GTCTC | 2 cut(s) | 124, 1871 |
| BsmBI | CGTCTC | 1 cut(s) | 124 |
| BsmI | GAATGC | 1 cut(s) | 1002 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1830 |
| Bsp1407I | TGTACA | 1 cut(s) | 1401 |
| Bsp143I | GATC | 3 cut(s) | 981, 1574, 1888 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 17 |
| BspCNI | CTCAG | 3 cut(s) | 30, 80, 460 |
| BspHI | TCATGA | 1 cut(s) | 700 |
| BspLI | GGNNCC | 3 cut(s) | 902, 1800, 1890 |
| BspMAI | CTGCAG | 1 cut(s) | 484 |
| BspMI | ACCTGC | 1 cut(s) | 304 |
| BspPI | GGATC | 2 cut(s) | 1883, 1896 |
| BspQI | GCTCTTC | 1 cut(s) | 381 |
| BsrBI | CCGCTC | 1 cut(s) | 374 |
| BsrGI | TGTACA | 1 cut(s) | 1401 |
| BsrI | ACTGG | 5 cut(s) | 325, 351, 412, 939, 1170 |
| BssECI | CCNNGG | 1 cut(s) | 892 |
| BssMI | GATC | 3 cut(s) | 981, 1574, 1888 |
| BssNI | GRCGYC | 1 cut(s) | 1385 |
| BssSI | CACGAG | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 1 cut(s) | 892 |
| Bst2BI | CACGAG | 1 cut(s) | 276 |
| Bst4CI | ACNGT | 6 cut(s) | 162, 192, 956, 1109, 1226, 1641 |
| Bst6I | CTCTTC | 3 cut(s) | 381, 543, 1533 |
| BstACI | GRCGYC | 1 cut(s) | 1385 |
| BstAUI | TGTACA | 1 cut(s) | 1401 |
| BstBAI | YACGTR | 2 cut(s) | 382, 878 |
| BstC8I | GCNNGC | 4 cut(s) | 501, 1131, 1355, 1712 |
| BstDEI | CTNAG | 4 cut(s) | 17, 67, 468, 1666 |
| BstF5I | GGATG | 3 cut(s) | 238, 1156, 1793 |
| BstKTI | GATC | 3 cut(s) | 984, 1577, 1891 |
| BstMAI | GTCTC | 2 cut(s) | 124, 1871 |
| BstMBI | GATC | 3 cut(s) | 981, 1574, 1888 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 101, 461, 618, 1628 |
| BstNSI | RCATGY | 4 cut(s) | 951, 1133, 1357, 1555 |
| BstSFI | CTRYAG | 2 cut(s) | 480, 985 |
| BstV1I | GCAGC | 8 cut(s) | 91, 157, 466, 508, 1344, 1381, 1640, 1898 |
| BstX2I | RGATCY | 1 cut(s) | 1888 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1899 |
| BstYI | RGATCY | 1 cut(s) | 1888 |
| BtsCI | GGATG | 3 cut(s) | 238, 1156, 1793 |
| BtsIMutI | CAGTG | 2 cut(s) | 792, 1263 |
| BveI | ACCTGC | 1 cut(s) | 304 |
| Cac8I | GCNNGC | 4 cut(s) | 501, 1131, 1355, 1712 |
| CciI | TCATGA | 1 cut(s) | 700 |
| Cfr13I | GGNCC | 1 cut(s) | 563 |
| CseI | GACGC | 3 cut(s) | 110, 1071, 1393 |
| Csp6I | GTAC | 3 cut(s) | 49, 1402, 1661 |
| CviAII | CATG | 9 cut(s) | 589, 701, 948, 1130, 1354, 1399, 1552, 1586, 1736 |
| CviQI | GTAC | 3 cut(s) | 49, 1402, 1661 |
| DdeI | CTNAG | 4 cut(s) | 17, 67, 468, 1666 |
| DpnI | GATC | 3 cut(s) | 983, 1576, 1890 |
| DpnII | GATC | 3 cut(s) | 981, 1574, 1888 |
| DraI | TTTAAA | 2 cut(s) | 886, 943 |
| Eam1104I | CTCTTC | 3 cut(s) | 381, 543, 1533 |
| EarI | CTCTTC | 3 cut(s) | 381, 543, 1533 |
| EciI | GGCGGA | 2 cut(s) | 25, 52 |
| Eco130I | CCWWGG | 1 cut(s) | 892 |
| Eco32I | GATATC | 1 cut(s) | 1027 |
| Eco47I | GGWCC | 1 cut(s) | 563 |
| Eco57I | CTGAAG | 3 cut(s) | 387, 1106, 1557 |
| Eco72I | CACGTG | 1 cut(s) | 382 |
| EcoRI | GAATTC | 1 cut(s) | 1581 |
| EcoRV | GATATC | 1 cut(s) | 1027 |
| EcoT14I | CCWWGG | 1 cut(s) | 892 |
| EcoT22I | ATGCAT | 2 cut(s) | 1624, 1756 |
| ErhI | CCWWGG | 1 cut(s) | 892 |
| Esp3I | CGTCTC | 1 cut(s) | 124 |
| FaeI | CATG | 9 cut(s) | 592, 704, 951, 1133, 1357, 1402, 1555, 1589, 1739 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 360, 392 |
| FatI | CATG | 9 cut(s) | 588, 700, 947, 1129, 1353, 1398, 1551, 1585, 1735 |
| FauI | CCCGC | 3 cut(s) | 100, 269, 614 |
| FauNDI | CATATG | 4 cut(s) | 492, 559, 1087, 1624 |
| FokI | GGATG | 3 cut(s) | 225, 1163, 1800 |
| FspBI | CTAG | 4 cut(s) | 359, 456, 1212, 1578 |
| GsaI | CCCAGC | 1 cut(s) | 2039 |
| HapII | CCGG | 1 cut(s) | 805 |
| HgaI | GACGC | 3 cut(s) | 110, 1071, 1393 |
| Hin1I | GRCGYC | 1 cut(s) | 1385 |
| Hin1II | CATG | 9 cut(s) | 592, 704, 951, 1133, 1357, 1402, 1555, 1589, 1739 |
| HincII | GTYRAC | 1 cut(s) | 258 |
| HindII | GTYRAC | 1 cut(s) | 258 |
| HindIII | AAGCTT | 1 cut(s) | 1094 |
| HinfI | GANTC | 7 cut(s) | 42, 693, 712, 911, 1115, 1496, 1678 |
| HpaII | CCGG | 1 cut(s) | 805 |
| HphI | GGTGA | 4 cut(s) | 81, 852, 1078, 1235 |
| Hpy166II | GTNNAC | 5 cut(s) | 258, 392, 754, 1243, 1637 |
| Hpy188I | TCNGA | 6 cut(s) | 130, 229, 692, 1430, 1537, 1840 |
| Hpy188III | TCNNGA | 8 cut(s) | 278, 572, 631, 701, 716, 1139, 1300, 1578 |
| Hpy8I | GTNNAC | 5 cut(s) | 258, 392, 754, 1243, 1637 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 104 |
| HpyCH4III | ACNGT | 6 cut(s) | 162, 192, 956, 1109, 1226, 1641 |
| HpyCH4IV | ACGT | 2 cut(s) | 381, 877 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 101, 461, 618, 1628 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 67, 468, 1666 |
| HpySE526I | ACGT | 2 cut(s) | 381, 877 |
| Hsp92I | GRCGYC | 1 cut(s) | 1385 |
| Hsp92II | CATG | 9 cut(s) | 592, 704, 951, 1133, 1357, 1402, 1555, 1589, 1739 |
| Kzo9I | GATC | 3 cut(s) | 981, 1574, 1888 |
| LguI | GCTCTTC | 1 cut(s) | 381 |
| LmnI | GCTCC | 2 cut(s) | 906, 1798 |
| Lsp1109I | GCAGC | 8 cut(s) | 91, 157, 466, 508, 1344, 1381, 1640, 1898 |
| LweI | GCATC | 3 cut(s) | 160, 1739, 1778 |
| MaeI | CTAG | 4 cut(s) | 359, 456, 1212, 1578 |
| MaeII | ACGT | 2 cut(s) | 381, 877 |
| MaeIII | GTNAC | 9 cut(s) | 316, 333, 422, 759, 800, 950, 1066, 1226, 1381 |
| MalI | GATC | 3 cut(s) | 983, 1576, 1890 |
| MbiI | CCGCTC | 1 cut(s) | 374 |
| MboI | GATC | 3 cut(s) | 981, 1574, 1888 |
| MboII | GAAGA | 8 cut(s) | 143, 368, 560, 716, 1447, 1550, 1574, 2023 |
| MfeI | CAATTG | 1 cut(s) | 1742 |
| MflI | RGATCY | 1 cut(s) | 1888 |
| MhlI | GDGCHC | 1 cut(s) | 1830 |
| MlyI | GAGTC | 2 cut(s) | 702, 920 |
| MmeI | TCCRAC | 5 cut(s) | 174, 211, 810, 1164, 1399 |
| Mph1103I | ATGCAT | 2 cut(s) | 1624, 1756 |
| MroXI | GAANNNNTTC | 2 cut(s) | 643, 711 |
| MslI | CAYNNNNRTG | 2 cut(s) | 593, 1550 |
| MspA1I | CMGCKG | 2 cut(s) | 499, 1394 |
| MspI | CCGG | 1 cut(s) | 805 |
| MunI | CAATTG | 1 cut(s) | 1742 |
| Mva1269I | GAATGC | 1 cut(s) | 1002 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 101, 461, 618, 1628 |
| NdeI | CATATG | 4 cut(s) | 492, 559, 1087, 1624 |
| NdeII | GATC | 3 cut(s) | 981, 1574, 1888 |
| NlaIII | CATG | 9 cut(s) | 592, 704, 951, 1133, 1357, 1402, 1555, 1589, 1739 |
| NlaIV | GGNNCC | 3 cut(s) | 902, 1800, 1890 |
| NmuCI | GTSAC | 6 cut(s) | 759, 800, 950, 1066, 1226, 1381 |
| NsiI | ATGCAT | 2 cut(s) | 1624, 1756 |
| NspI | RCATGY | 4 cut(s) | 951, 1133, 1357, 1555 |
| PaeI | GCATGC | 2 cut(s) | 1133, 1357 |
| PagI | TCATGA | 1 cut(s) | 700 |
| PciI | ACATGT | 1 cut(s) | 1551 |
| PciSI | GCTCTTC | 1 cut(s) | 381 |
| PctI | GAATGC | 1 cut(s) | 1002 |
| PdmI | GAANNNNTTC | 2 cut(s) | 643, 711 |
| PfeI | GAWTC | 5 cut(s) | 42, 712, 1115, 1496, 1678 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 193 |
| PleI | GAGTC | 2 cut(s) | 701, 919 |
| PmaCI | CACGTG | 1 cut(s) | 382 |
| PmlI | CACGTG | 1 cut(s) | 382 |
| PpsI | GAGTC | 2 cut(s) | 701, 919 |
| Ppu21I | YACGTR | 2 cut(s) | 382, 878 |
| PscI | ACATGT | 1 cut(s) | 1551 |
| PsiI | TTATAA | 2 cut(s) | 1100, 1616 |
| PspCI | CACGTG | 1 cut(s) | 382 |
| PspFI | CCCAGC | 1 cut(s) | 2035 |
| PspN4I | GGNNCC | 3 cut(s) | 902, 1800, 1890 |
| PspPI | GGNCC | 1 cut(s) | 563 |
| PstI | CTGCAG | 1 cut(s) | 484 |
| PsuI | RGATCY | 1 cut(s) | 1888 |
| PvuII | CAGCTG | 2 cut(s) | 499, 1394 |
| RsaI | GTAC | 3 cut(s) | 50, 1403, 1662 |
| RsaNI | GTAC | 3 cut(s) | 49, 1402, 1661 |
| RseI | CAYNNNNRTG | 2 cut(s) | 593, 1550 |
| SapI | GCTCTTC | 1 cut(s) | 381 |
| Sau3AI | GATC | 3 cut(s) | 981, 1574, 1888 |
| Sau96I | GGNCC | 1 cut(s) | 563 |
| SchI | GAGTC | 2 cut(s) | 702, 920 |
| SduI | GDGCHC | 1 cut(s) | 1830 |
| SfaNI | GCATC | 3 cut(s) | 160, 1739, 1778 |
| SfcI | CTRYAG | 2 cut(s) | 480, 985 |
| SinI | GGWCC | 1 cut(s) | 563 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 593, 1550 |
| SmlI | CTYRAG | 4 cut(s) | 1061, 1139, 1874, 1915 |
| SmoI | CTYRAG | 4 cut(s) | 1061, 1139, 1874, 1915 |
| SphI | GCATGC | 2 cut(s) | 1133, 1357 |
| SspMI | CTAG | 4 cut(s) | 359, 456, 1212, 1578 |
| StyI | CCWWGG | 1 cut(s) | 892 |
| TaaI | ACNGT | 6 cut(s) | 162, 192, 956, 1109, 1226, 1641 |
| TaiI | ACGT | 2 cut(s) | 384, 880 |
| TaqI | TCGA | 2 cut(s) | 155, 1824 |
| TatI | WGTACW | 2 cut(s) | 48, 1401 |
| TauI | GCSGC | 4 cut(s) | 374, 544, 826, 1136 |
| TfiI | GAWTC | 5 cut(s) | 42, 712, 1115, 1496, 1678 |
| TscAI | CASTG | 2 cut(s) | 792, 1263 |
| TseFI | GTSAC | 6 cut(s) | 759, 800, 950, 1066, 1226, 1381 |
| TseI | GCWGC | 8 cut(s) | 104, 145, 479, 496, 1357, 1394, 1628, 1911 |
| Tsp45I | GTSAC | 6 cut(s) | 759, 800, 950, 1066, 1226, 1381 |
| TspGWI | ACGGA | 3 cut(s) | 106, 555, 1189 |
| TspRI | CASTG | 2 cut(s) | 792, 1263 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 193 |
| VpaK11BI | GGWCC | 1 cut(s) | 563 |
| XapI | RAATTY | 8 cut(s) | 510, 865, 938, 1009, 1037, 1483, 1581, 2006 |
| XbaI | TCTAGA | 1 cut(s) | 1577 |
| XceI | RCATGY | 4 cut(s) | 951, 1133, 1357, 1555 |
| XmnI | GAANNNNTTC | 2 cut(s) | 643, 711 |
| XspI | CTAG | 4 cut(s) | 359, 456, 1212, 1578 |
| Zsp2I | ATGCAT | 2 cut(s) | 1624, 1756 |