Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Forward (+)

30957902 .. 30968620

Gene Structure 10719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGAAAGCCAAGAAGCTAAGCACTCTCTTTCGCTCAGCCATCAAATACAAATCCTCCTCCTCCTCTTCCTCCGCCAAATCGCTACCCTCACCCGCCGAGGACGCCACTCTCAAATTCGTCTCTGCTTCCGGTAATCGTCAATCTAACTCTTCCTTTGTTTCCGTCACTGTTTGTAACGAAAATGGAGAATTAGAAACCCTAAATACTGAAGATTCGACTAGGCAGCTCTCTGGGGACATTTATTCAATACTGTGCGGTGGTACTTATCCTGATATCCAGGAAATCGATGATGCAGAATCTTTGGAGAGGGAATTGGACTTACCATGGTTTCCAGATTTATCCCATAGTGCGATGCCATTGCGCCGCAAAGAAGTTAGTCGCGAAAGGAAGCAGAGGTTTGCTTTCGGCAACACTCAGGGTATCCGTTTTGATAAGTTAGTCGACATGTGTGCCAATAGGCTAGGGACTGAAACCACTATTCAAGTGTTTGACAAATTGGGAAGAGAAACGGGTGTGAAAGAATGTAATGCATTGATAAAGAGATGCATAGAGGGAGCTAGGATTGCTCCTGATGAAGTAGTTGGAGAAAAGCATATGCAGTTGGCTTTTGAAATTTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAACATATGGTCCGTTTCTTGAATATCTTATCGACATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACGAAGGAGATTTTGAAGCTCTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTTTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCAGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTGTTGGCATTCCGAATTTAGCGGTTGAGGATGTCATTTCAAAATTTAAAAACTTGCACACAAAACTTGAGGTGACACCTTCATCTGTGTCATATGAGAAGCTTATCATCTACTGTTGCGGTTCACTTAAGGTGCATGTGGCTCTTGAGCTGGTGAATGAGATGTCTGAACAGGGTTTGACATTTTCGATGGAGGCATTACACTCCATTTTACAAGCTAGTAGTGAGAGTTGTGACTTTAATCTGGTTCACCAAATTTATTCAGTGATTAGCCGAGGCAATTTGAAGCCCAATAGCGAAACTTTCAGGAGTATGATAAATCTTTGTGTGAAAATGAAGGATTATGAGGGTGCCTATAGCATGCTGAGTGATTTGGAGAAAATGAATTTGACGCCCACAGCTGCCATGTACAATGCTATAATGGCTGGATATTTCCGAGAGAAGAACTTGTCCGGTGGGTTAAAGGTTCTCAAACAAATGAAAGAAGCAGATGTAAAACCAGATTCCCACACTTTCAAAATGAAGCGATCTGGAATTCAAGTTACCAAGCAAGTTTTCATGGCACTTGTAAATGCATATGCAGCTTGTGGACAGTTTGAAAAGGCAAAACAGGTACTCTTAGACAAGGGAATTCCAGTAAAGAGCTTCAATGAGATTAAAAGTGTGCTTGTCCAAGCCCTTGCATCACATGGGCAATTGTCTGATGCATTTAATACATATGAAGAGATCAAGCAAGCTGGATGCAGTTTGGAGCCGAAAGCTGTTATAAGTCTTATCGAGCACCTTCAATCTGATGAAGAAGCATTAAGCAGATTACTCCTCCTACTTGAGACACTAAATGATCCAAACTATTGGCTTGATGGTTGCTTGAGAACTATCTTGTATTGTGTTCGTTACAAGCATTTAAGACCTGCCGTCAATTTGCTTGAGCAACTCAGGGATCAGGTCTGTACTGACGAATTAGCTCTAGAAGTAATTTTTGATAAGGTGTTTTCCTTCATAGCAGAATCGGAGTCTACATCTTTAGAGTTTGGCCTAGATTTGCTTCATGCTATGAAGAGTGAGCTTGGCCTCACCCCTTCACGAAAATGTCTCGATTTTCTTCTCCACGCTTGTGTCACTGCCAAAGATCTGCAAAGTTCCCTATTTGTATGGCAAGAATATCAAGCCGCTGGCTTGCCTTACAATACCTTAAGCTTTTTAAGGATGTATCAAGCCCTTTTGGCTGCAGGGGACCGAAAGGCTGCAAAAGTTTTGGGACGTAAAATTCCTAAAGACGATCCTCATGTTCGGTCTATCATTGAATCATGTACACTGACTTATTTAGAGAAGAAGGAAGAAAAGAAAAAGAAAAAGAAAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

820

Amino Acids

92.5

Weight (kDa)

6.13

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	398 - 534	8.1e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	497 - 538	2.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1862
Acc36I	ACCTGC	1 cut(s)	2014
AccB1I	GGYRCC	1 cut(s)	1445
AccI	GTMKAC	2 cut(s)	441, 2111
AccII	CGCG	1 cut(s)	381
AciI	CCGC	8 cut(s)	72, 93, 255, 364, 644, 1118, 1215, 2265
AclWI	GGATC	4 cut(s)	797, 1931, 2043, 2369
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	2 cut(s)	102, 1487
AdeI	CACNNNGTG	1 cut(s)	896
AfaI	GTAC	5 cut(s)	262, 1505, 1710, 2047, 2407
AfiI	CCNNNNNNNGG	1 cut(s)	913
AflII	CTTAAG	2 cut(s)	1223, 2287
AflIII	ACRYGT	1 cut(s)	444
AhdI	GACNNNNNGTC	1 cut(s)	2009
AjnI	CCWGG	2 cut(s)	276, 993
AjuI	GAANNNNNNNTTGG	2 cut(s)	1634, 1666
AleI	CACNNNNGTG	1 cut(s)	2208
AloI	GAACNNNNNNTCC	2 cut(s)	624, 656
Alw21I	GWGCWC	2 cut(s)	825, 1878
Alw26I	GTCTC	3 cut(s)	124, 1919, 2192
AlwI	GGATC	4 cut(s)	797, 1931, 2043, 2369
AlwNI	CAGNNNCTG	1 cut(s)	1056
AoxI	GGCC	2 cut(s)	2128, 2164
ApeKI	GCWGC	6 cut(s)	223, 1061, 1496, 1676, 2321, 2339
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	665, 1030, 2329
AsuHPI	GGTGA	6 cut(s)	81, 954, 1180, 1261, 1337, 2161
AvaII	GGWCC	3 cut(s)	665, 1030, 2329
BanI	GGYRCC	1 cut(s)	1445
BanII	GRGCYC	1 cut(s)	825
Bbv12I	GWGCWC	2 cut(s)	825, 1878
BbvI	GCAGC	6 cut(s)	235, 1073, 1483, 1688, 2308, 2326
BccI	CCATC	4 cut(s)	47, 842, 1279, 1949
BceAI	ACGGC	1 cut(s)	1994
BcgI	CGANNNNNNTGC	4 cut(s)	340, 374, 431, 465
BciT130I	CCWGG	2 cut(s)	278, 995
BciVI	GTATCC	2 cut(s)	431, 761
BcoDI	GTCTC	3 cut(s)	124, 1919, 2192
BfaI	CTAG	6 cut(s)	219, 461, 558, 1314, 2063, 2132
BfmI	CTRYAG	3 cut(s)	1087, 1450, 2322
BfrI	CTTAAG	2 cut(s)	1223, 2287
BfuAI	ACCTGC	1 cut(s)	2014
BfuI	GTATCC	2 cut(s)	431, 761
BglI	GCCNNNNNGGC	1 cut(s)	2318
BglII	AGATCT	1 cut(s)	2224
BisI	GCNGC	8 cut(s)	224, 364, 1062, 1497, 1677, 2265, 2322, 2340
BlpI	GCTNAGC	2 cut(s)	17, 34
BlsI	GCNGC	8 cut(s)	225, 365, 1063, 1498, 1678, 2266, 2323, 2341
Bme1390I	CCNGG	2 cut(s)	278, 995
Bme18I	GGWCC	3 cut(s)	665, 1030, 2329
BmeRI	GACNNNNNGTC	1 cut(s)	2009
BmgT120I	GGNCC	3 cut(s)	665, 1030, 2329
BmiI	GGNNCC	4 cut(s)	1004, 1447, 1848, 2330
BmrFI	CCNGG	2 cut(s)	278, 995
BmsI	GCATC	6 cut(s)	280, 342, 533, 1787, 1789, 1826
Bpu1102I	GCTNAGC	2 cut(s)	17, 34
BpuEI	CTTGAG	5 cut(s)	1184, 1262, 1943, 1984, 2042
Bsa29I	ATCGAT	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	980
BsaHI	GRCGYC	2 cut(s)	102, 1487
BsaJI	CCNNGG	4 cut(s)	96, 323, 994, 1369
BsaWI	WCCGGW	4 cut(s)	128, 906, 964, 1547
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	913
Bse1I	ACTGG	2 cut(s)	1050, 1730
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	278, 995
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	4 cut(s)	96, 323, 994, 1369
BseGI	GGATG	3 cut(s)	1132, 1841, 2307
BseLI	CCNNNNNNNGG	1 cut(s)	913
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	4 cut(s)	48, 428, 1451, 2044
BseNI	ACTGG	2 cut(s)	1050, 1730
BseRI	GAGGAG	4 cut(s)	46, 49, 52, 1904
BseXI	GCAGC	6 cut(s)	235, 1073, 1483, 1688, 2308, 2326
BsgI	GTGCAG	1 cut(s)	1080
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	2130, 2166
BshNI	GGYRCC	1 cut(s)	1445
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	2 cut(s)	825, 1878
BsiSI	CCGG	4 cut(s)	129, 907, 965, 1548
BslFI	GGGAC	4 cut(s)	248, 478, 2342, 2367
BslI	CCNNNNNNNGG	1 cut(s)	913
BsmAI	GTCTC	3 cut(s)	124, 1919, 2192
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	4 cut(s)	248, 478, 2342, 2367
BsmI	GAATGC	1 cut(s)	1104
BsnI	GGCC	2 cut(s)	2130, 2166
Bsp1286I	GDGCHC	2 cut(s)	825, 1878
Bsp1407I	TGTACA	2 cut(s)	1503, 2405
Bsp143I	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
Bsp1720I	GCTNAGC	2 cut(s)	17, 34
Bsp19I	CCATGG	1 cut(s)	323
Bsp68I	TCGCGA	1 cut(s)	381
BspACI	CCGC	8 cut(s)	72, 93, 255, 364, 644, 1118, 1215, 2265
BspANI	GGCC	2 cut(s)	2130, 2166
BspCNI	CTCAG	4 cut(s)	47, 427, 1452, 2043
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	1004, 1447, 1848, 2330
BspMAI	CTGCAG	1 cut(s)	2326
BspMI	ACCTGC	1 cut(s)	2014
BspPI	GGATC	4 cut(s)	797, 1931, 2043, 2369
BspT107I	GGYRCC	1 cut(s)	1445
BspTI	CTTAAG	2 cut(s)	1223, 2287
BsrDI	GCAATG	1 cut(s)	356
BsrGI	TGTACA	2 cut(s)	1503, 2405
BsrI	ACTGG	2 cut(s)	1050, 1730
BssECI	CCNNGG	4 cut(s)	96, 323, 994, 1369
BssMI	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
BssNI	GRCGYC	2 cut(s)	102, 1487
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	2 cut(s)	278, 995
Bst4CI	ACNGT	5 cut(s)	169, 252, 1058, 1211, 1689
Bst6I	CTCTTC	6 cut(s)	70, 154, 496, 645, 1812, 2147
BstACI	GRCGYC	2 cut(s)	102, 1487
BstAFI	CTTAAG	2 cut(s)	1223, 2287
BstAUI	TGTACA	2 cut(s)	1503, 2405
BstBAI	YACGTR	1 cut(s)	980
BstC8I	GCNNGC	4 cut(s)	1457, 1830, 2269, 2273
BstDEI	CTNAG	7 cut(s)	17, 34, 414, 931, 1460, 1714, 2030
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	3 cut(s)	1132, 1841, 2307
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	8 cut(s)	792, 1086, 1625, 1824, 1939, 2038, 2227, 2377
BstMAI	GTCTC	3 cut(s)	124, 1919, 2192
BstMBI	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 563, 720, 1517, 1676, 2318
BstNI	CCWGG	2 cut(s)	278, 995
BstNSI	RCATGY	3 cut(s)	448, 1235, 1459
BstSCI	CCNGG	2 cut(s)	276, 993
BstSFI	CTRYAG	3 cut(s)	1087, 1450, 2322
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	6 cut(s)	235, 1073, 1483, 1688, 2308, 2326
BstX2I	RGATCY	1 cut(s)	2224
BstXI	CCANNNNNNTGG	1 cut(s)	1947
BstYI	RGATCY	1 cut(s)	2224
Bsu15I	ATCGAT	1 cut(s)	285
BsuI	GTATCC	2 cut(s)	431, 761
BsuRI	GGCC	2 cut(s)	2130, 2166
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	1132, 1841, 2307
BtsI	GCAGTG	1 cut(s)	2214
BtsIMutI	CAGTG	5 cut(s)	165, 1057, 1365, 2214, 2408
BtuMI	TCGCGA	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	2014
Cac8I	GCNNGC	4 cut(s)	1457, 1830, 2269, 2273
CaiI	CAGNNNCTG	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	665, 1030, 2329
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	2 cut(s)	110, 1495
Csp6I	GTAC	5 cut(s)	261, 1504, 1709, 2046, 2406
CviQI	GTAC	5 cut(s)	261, 1504, 1709, 2046, 2406
DdeI	CTNAG	7 cut(s)	17, 34, 414, 931, 1460, 1714, 2030
DpnI	GATC	8 cut(s)	791, 1085, 1624, 1823, 1938, 2037, 2226, 2376
DpnII	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
DraI	TTTAAA	3 cut(s)	988, 1045, 1144
DraIII	CACNNNGTG	1 cut(s)	896
DriI	GACNNNNNGTC	1 cut(s)	2009
Eam1104I	CTCTTC	6 cut(s)	70, 154, 496, 645, 1812, 2147
Eam1105I	GACNNNNNGTC	1 cut(s)	2009
EarI	CTCTTC	6 cut(s)	70, 154, 496, 645, 1812, 2147
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	823
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	3 cut(s)	665, 1030, 2329
Eco53kI	GAGCTC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	823
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoRI	GAATTC	2 cut(s)	1629, 1725
EcoRII	CCWGG	2 cut(s)	276, 993
EcoRV	GATATC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	323
EcoT22I	ATGCAT	4 cut(s)	532, 548, 1672, 1804
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	124
FaqI	GGGAC	4 cut(s)	248, 478, 2342, 2367
FauI	CCCGC	2 cut(s)	100, 651
FauNDI	CATATG	5 cut(s)	594, 661, 1189, 1672, 1813
FblI	GTMKAC	2 cut(s)	441, 2111
Fnu4HI	GCNGC	8 cut(s)	224, 364, 1062, 1497, 1677, 2265, 2322, 2340
FokI	GGATG	3 cut(s)	1139, 1848, 2314
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	8 cut(s)	224, 364, 1062, 1497, 1677, 2265, 2322, 2340
FspBI	CTAG	6 cut(s)	219, 461, 558, 1314, 2063, 2132
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	8 cut(s)	224, 364, 1062, 1497, 1677, 2265, 2322, 2340
HaeIII	GGCC	2 cut(s)	2130, 2166
HapII	CCGG	4 cut(s)	129, 907, 965, 1548
HgaI	GACGC	2 cut(s)	110, 1495
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	2 cut(s)	102, 1487
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	2 cut(s)	1196, 2290
HinfI	GANTC	9 cut(s)	212, 296, 795, 814, 1013, 1598, 2102, 2108, 2399
HpaII	CCGG	4 cut(s)	129, 907, 965, 1548
HphI	GGTGA	6 cut(s)	81, 954, 1180, 1261, 1337, 2161
Hpy166II	GTNNAC	7 cut(s)	442, 856, 1220, 1345, 1685, 2112, 2408
Hpy188I	TCNGA	7 cut(s)	794, 1110, 1264, 1532, 1798, 1888, 2107
Hpy8I	GTNNAC	7 cut(s)	442, 856, 1220, 1345, 1685, 2112, 2408
HpyCH4III	ACNGT	5 cut(s)	169, 252, 1058, 1211, 1689
HpyCH4IV	ACGT	2 cut(s)	979, 2356
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 563, 720, 1517, 1676, 2318
HpyF3I	CTNAG	7 cut(s)	17, 34, 414, 931, 1460, 1714, 2030
HpySE526I	ACGT	2 cut(s)	979, 2356
Hsp92I	GRCGYC	2 cut(s)	102, 1487
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
LmnI	GCTCC	4 cut(s)	554, 571, 1008, 1846
Lsp1109I	GCAGC	6 cut(s)	235, 1073, 1483, 1688, 2308, 2326
LweI	GCATC	6 cut(s)	280, 342, 533, 1787, 1789, 1826
MaeI	CTAG	6 cut(s)	219, 461, 558, 1314, 2063, 2132
MaeII	ACGT	2 cut(s)	979, 2356
MalI	GATC	8 cut(s)	791, 1085, 1624, 1823, 1938, 2037, 2226, 2376
MboI	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
MfeI	CAATTG	1 cut(s)	1790
MflI	RGATCY	1 cut(s)	2224
MhlI	GDGCHC	2 cut(s)	825, 1878
MlyI	GAGTC	3 cut(s)	804, 1022, 2117
MmeI	TCCRAC	1 cut(s)	562
Mph1103I	ATGCAT	4 cut(s)	532, 548, 1672, 1804
MslI	CAYNNNNRTG	3 cut(s)	695, 2182, 2208
MspA1I	CMGCKG	2 cut(s)	1496, 2267
MspCI	CTTAAG	2 cut(s)	1223, 2287
MspI	CCGG	4 cut(s)	129, 907, 965, 1548
MspR9I	CCNGG	2 cut(s)	278, 995
MunI	CAATTG	1 cut(s)	1790
Mva1269I	GAATGC	1 cut(s)	1104
MvaI	CCWGG	2 cut(s)	278, 995
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	6 cut(s)	101, 563, 720, 1517, 1676, 2318
NcoI	CCATGG	1 cut(s)	323
NdeI	CATATG	5 cut(s)	594, 661, 1189, 1672, 1813
NdeII	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
NlaIV	GGNNCC	4 cut(s)	1004, 1447, 1848, 2330
NmeAIII	GCCGAG	3 cut(s)	121, 749, 1394
NmuCI	GTSAC	6 cut(s)	163, 902, 1052, 1168, 1328, 2212
NruI	TCGCGA	1 cut(s)	381
NsiI	ATGCAT	4 cut(s)	532, 548, 1672, 1804
NspI	RCATGY	3 cut(s)	448, 1235, 1459
OliI	CACNNNNGTG	1 cut(s)	2208
PaeI	GCATGC	1 cut(s)	1459
PciI	ACATGT	1 cut(s)	444
PctI	GAATGC	1 cut(s)	1104
PfeI	GAWTC	6 cut(s)	212, 296, 814, 1598, 2102, 2399
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	8 cut(s)	225, 365, 1063, 1498, 1678, 2266, 2323, 2341
PleI	GAGTC	3 cut(s)	803, 1021, 2116
PpsI	GAGTC	3 cut(s)	803, 1021, 2116
Ppu21I	YACGTR	1 cut(s)	980
PpuMI	RGGWCCY	1 cut(s)	1030
PscI	ACATGT	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	1862
Psp124BI	GAGCTC	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	1030
Psp6I	CCWGG	2 cut(s)	276, 993
PspGI	CCWGG	2 cut(s)	276, 993
PspN4I	GGNNCC	4 cut(s)	1004, 1447, 1848, 2330
PspPI	GGNCC	3 cut(s)	665, 1030, 2329
PspPPI	RGGWCCY	1 cut(s)	1030
PstI	CTGCAG	1 cut(s)	2326
PstNI	CAGNNNCTG	1 cut(s)	1056
PsuI	RGATCY	1 cut(s)	2224
PvuII	CAGCTG	1 cut(s)	1496
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	5 cut(s)	262, 1505, 1710, 2047, 2407
RsaNI	GTAC	5 cut(s)	261, 1504, 1709, 2046, 2406
RseI	CAYNNNNRTG	3 cut(s)	695, 2182, 2208
SacI	GAGCTC	1 cut(s)	825
SalI	GTCGAC	1 cut(s)	440
SatI	GCNGC	8 cut(s)	224, 364, 1062, 1497, 1677, 2265, 2322, 2340
Sau3AI	GATC	8 cut(s)	789, 1083, 1622, 1821, 1936, 2035, 2224, 2374
Sau96I	GGNCC	3 cut(s)	665, 1030, 2329
SchI	GAGTC	3 cut(s)	804, 1022, 2117
ScrFI	CCNGG	2 cut(s)	278, 995
SduI	GDGCHC	2 cut(s)	825, 1878
SfaNI	GCATC	6 cut(s)	280, 342, 533, 1787, 1789, 1826
SfcI	CTRYAG	3 cut(s)	1087, 1450, 2322
SinI	GGWCC	3 cut(s)	665, 1030, 2329
SmiMI	CAYNNNNRTG	3 cut(s)	695, 2182, 2208
SmlI	CTYRAG	7 cut(s)	1163, 1223, 1241, 1922, 1963, 2021, 2287
SmoI	CTYRAG	7 cut(s)	1163, 1223, 1241, 1922, 1963, 2021, 2287
SphI	GCATGC	1 cut(s)	1459
SsiI	CCGC	8 cut(s)	72, 93, 255, 364, 644, 1118, 1215, 2265
SspMI	CTAG	6 cut(s)	219, 461, 558, 1314, 2063, 2132
SstI	GAGCTC	1 cut(s)	825
StyD4I	CCNGG	2 cut(s)	276, 993
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	5 cut(s)	169, 252, 1058, 1211, 1689
TaiI	ACGT	2 cut(s)	982, 2359
TaqI	TCGA	7 cut(s)	215, 285, 441, 687, 1283, 1872, 2190
TaqII	GACCGA	2 cut(s)	2346, 2376
TatI	WGTACW	3 cut(s)	1503, 2045, 2405
TauI	GCSGC	2 cut(s)	366, 2267
TfiI	GAWTC	6 cut(s)	212, 296, 814, 1598, 2102, 2399
TscAI	CASTG	5 cut(s)	172, 1057, 1365, 2221, 2415
TseFI	GTSAC	6 cut(s)	163, 902, 1052, 1168, 1328, 2212
TseI	GCWGC	6 cut(s)	223, 1061, 1496, 1676, 2321, 2339
Tsp45I	GTSAC	6 cut(s)	163, 902, 1052, 1168, 1328, 2212
TspGWI	ACGGA	3 cut(s)	151, 413, 657
TspRI	CASTG	5 cut(s)	172, 1057, 1365, 2221, 2415
Vha464I	CTTAAG	2 cut(s)	1223, 2287
VpaK11BI	GGWCC	3 cut(s)	665, 1030, 2329
XbaI	TCTAGA	1 cut(s)	2062
XceI	RCATGY	3 cut(s)	448, 1235, 1459
XmiI	GTMKAC	2 cut(s)	441, 2111
XspI	CTAG	6 cut(s)	219, 461, 558, 1314, 2063, 2132
Zsp2I	ATGCAT	4 cut(s)	532, 548, 1672, 1804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.