Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Forward (+)

33482817 .. 33494026

Gene Structure 11210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCCATTGCGCCGCAAAGAAGTTAGTCGCGAAAGGAAGCAGAGGTTTGCTTTCGGCAACACTCAGGGTATCCGTTTTGATAAGTTAGTCGACATGTGTGCCAATAGGCTAGGGACTGAAACCACTATTCAAGTGTTTGACAAATTGGGAAGAGAAACGGGTGTGAAAGAATGTAATGCATTGATAAAGAGATGCATAGAGGGAGCTAGGATTGCTCCTGATGAAGTAGTTGGAGAAAAGCATATGCAGTTGGCTTTTGAAAATTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAACATATGGTCCGTTTCTTGAATATCTTATTGACATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACGAAGGAGATTTTGAAGCTCTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTTTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCAGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTTTTGGCATTCCGAATTTAGCGGTGAGGACCTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

261

Amino Acids

30.1

Weight (kDa)

5.56

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	30
AciI	CCGC	3 cut(s)	13, 293, 767
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	3 cut(s)	262, 689, 760
AdeI	CACNNNGTG	1 cut(s)	545
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	8 cut(s)	131, 260, 299, 326, 408, 467, 574, 726
AjnI	CCWGG	1 cut(s)	642
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	3 cut(s)	206, 472, 577
AluI	AGCT	3 cut(s)	206, 472, 577
Alw21I	GWGCWC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	705
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	3 cut(s)	262, 689, 760
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	314, 679, 774
AsuHPI	GGTGA	2 cut(s)	603, 781
AvaII	GGWCC	3 cut(s)	314, 679, 774
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	644
BciVI	GTATCC	2 cut(s)	80, 410
BfaI	CTAG	2 cut(s)	110, 207
BfmI	CTRYAG	1 cut(s)	736
BfuI	GTATCC	2 cut(s)	80, 410
BisI	GCNGC	2 cut(s)	13, 711
BlsI	GCNGC	2 cut(s)	14, 712
Bme1390I	CCNGG	1 cut(s)	644
Bme18I	GGWCC	3 cut(s)	314, 679, 774
BmgT120I	GGNCC	3 cut(s)	314, 679, 774
BmiI	GGNNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	2 cut(s)	555, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	556, 614
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	753
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	438, 732
Bsp68I	TCGCGA	1 cut(s)	30
BspACI	CCGC	3 cut(s)	13, 293, 767
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	782
BspLI	GGNNCC	1 cut(s)	653
BspPI	GGATC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	699
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	2 cut(s)	438, 732
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	2 cut(s)	145, 294
BstBAI	YACGTR	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	63, 580
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	441, 735
BstMBI	GATC	2 cut(s)	438, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 369
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	642
BstSFI	CTRYAG	1 cut(s)	736
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	722
BsuI	GTATCC	2 cut(s)	80, 410
BtsIMutI	CAGTG	1 cut(s)	706
BtuMI	TCGCGA	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	705
CciI	TCATGA	1 cut(s)	782
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	3 cut(s)	314, 679, 774
CviAII	CATG	3 cut(s)	94, 340, 783
CviJI	RGCY	7 cut(s)	109, 206, 254, 472, 577, 652, 698
CviKI_1	RGCY	7 cut(s)	109, 206, 254, 472, 577, 652, 698
DdeI	CTNAG	2 cut(s)	63, 580
DpnI	GATC	2 cut(s)	440, 734
DpnII	GATC	2 cut(s)	438, 732
DraI	TTTAAA	2 cut(s)	637, 694
DraIII	CACNNNGTG	1 cut(s)	545
Eam1104I	CTCTTC	2 cut(s)	145, 294
EarI	CTCTTC	2 cut(s)	145, 294
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	3 cut(s)	314, 679, 774
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoO109I	RGGNCCY	2 cut(s)	679, 774
EcoRII	CCWGG	1 cut(s)	642
EcoT22I	ATGCAT	2 cut(s)	181, 197
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	3 cut(s)	97, 343, 786
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	3 cut(s)	93, 339, 782
FauI	CCCGC	1 cut(s)	300
FauNDI	CATATG	2 cut(s)	243, 310
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	13, 711
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	13, 711
FspBI	CTAG	2 cut(s)	110, 207
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	13, 711
HapII	CCGG	2 cut(s)	556, 614
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	97, 343, 786
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	444, 463, 662
HpaII	CCGG	2 cut(s)	556, 614
HphI	GGTGA	2 cut(s)	603, 781
Hpy166II	GTNNAC	2 cut(s)	91, 505
Hpy188I	TCNGA	2 cut(s)	443, 759
Hpy188III	TCNNGA	7 cut(s)	29, 218, 323, 408, 467, 686, 783
Hpy8I	GTNNAC	2 cut(s)	91, 505
HpyAV	CCTTC	5 cut(s)	271, 556, 642, 670, 692
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	5 cut(s)	179, 195, 247, 671, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 369
HpyF3I	CTNAG	2 cut(s)	63, 580
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	3 cut(s)	97, 343, 786
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	438, 732
LmnI	GCTCC	3 cut(s)	203, 220, 657
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	110, 207
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	491, 551, 701
MalI	GATC	2 cut(s)	440, 734
MboI	GATC	2 cut(s)	438, 732
MboII	GAAGA	2 cut(s)	162, 311
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	6 cut(s)	143, 262, 513, 526, 689, 760
MlyI	GAGTC	2 cut(s)	453, 671
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	4 cut(s)	36, 193, 295, 765
Mph1103I	ATGCAT	2 cut(s)	181, 197
MseI	TTAA	3 cut(s)	267, 636, 693
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	2 cut(s)	556, 614
MspR9I	CCNGG	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	644
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	212, 369
NdeI	CATATG	2 cut(s)	243, 310
NdeII	GATC	2 cut(s)	438, 732
NlaIII	CATG	3 cut(s)	97, 343, 786
NlaIV	GGNNCC	1 cut(s)	653
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	2 cut(s)	551, 701
NruI	TCGCGA	1 cut(s)	30
NsiI	ATGCAT	2 cut(s)	181, 197
NspI	RCATGY	1 cut(s)	97
PagI	TCATGA	1 cut(s)	782
PciI	ACATGT	1 cut(s)	93
PctI	GAATGC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	14, 712
PleI	GAGTC	2 cut(s)	452, 670
PpsI	GAGTC	2 cut(s)	452, 670
Ppu21I	YACGTR	1 cut(s)	629
PpuMI	RGGWCCY	2 cut(s)	679, 774
PscI	ACATGT	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	474
Psp5II	RGGWCCY	2 cut(s)	679, 774
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	653
PspPI	GGNCC	3 cut(s)	314, 679, 774
PspPPI	RGGWCCY	2 cut(s)	679, 774
PstNI	CAGNNNCTG	1 cut(s)	705
RruI	TCGCGA	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	474
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	267, 636, 693
SatI	GCNGC	2 cut(s)	13, 711
Sau3AI	GATC	2 cut(s)	438, 732
Sau96I	GGNCC	3 cut(s)	314, 679, 774
SchI	GAGTC	2 cut(s)	453, 671
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	7 cut(s)	47, 208, 474, 579, 631, 681, 779
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	736
SinI	GGWCC	3 cut(s)	314, 679, 774
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	6 cut(s)	143, 262, 513, 526, 689, 760
SsiI	CCGC	3 cut(s)	13, 293, 767
SspMI	CTAG	2 cut(s)	110, 207
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	707
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	90
TasI	AATT	6 cut(s)	143, 262, 513, 526, 689, 760
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	3 cut(s)	267, 636, 693
Tru9I	TTAA	3 cut(s)	267, 636, 693
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	2 cut(s)	551, 701
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	2 cut(s)	551, 701
TspDTI	ATGAA	3 cut(s)	237, 290, 468
TspGWI	ACGGA	2 cut(s)	62, 306
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	3 cut(s)	314, 679, 774
XapI	RAATTY	3 cut(s)	262, 689, 760
XceI	RCATGY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	110, 207
Zsp2I	ATGCAT	2 cut(s)	181, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.