RLG00000008461

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000531
Physical Location & Seq
Reverse (-)
30896170 .. 30906935
10766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008461

Sequence Viewer

Length: 2430 bp
ATGAAAGCCAAGAAGCTAAGCACTCTCTTTCGCTCAGCCATCAAATACAAACCCTCCTCCTCCTCTTCCTCCGCCAAATCGCTACCCTCACTCGCCGAGGACGCCACTCTCAAATTCGTCTCTGCTTCCGAAGATTCGACTAGGCAGCTCTCTGGGGACATTTATTCAATACTGTGTGGTACTTATCCTGATATCCAGGAAATCGATGATGCAGAATCTTTGGAGAGGGAATTGGACTTACCATGGTTTCCAGATTTATCCCATAGTGCGATGCCATTGCGCCGCAAAGAAGTTAGTCGCGAAAGGAAGCAGAGGTTTGCTTTCGGCAACACTCAGGGTATCCGTTTTGATAAGTTAGTCGACATGTGTGCCAATAGGCTAGGGACTGAAACCACTATTCAAGTGTTTGACAAATTGGGAAGAGAAACGGGTGTGAAAGAATGTAATGCATTGATAAAGAGATGCATAGAGGGAGCTAGGATTGCTCCTGATGAAGTAGTTGGAGAAAAGCATATGCAGTTGGCTTTTGAAATTTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAACATATGGTCCGTTTCTTGAATATCTTATCGACATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACGAAGGAGATTTTGAAGCTCTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTTTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCAGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTGTTGGCATTCCGAATTTAGCGGTTGAGGATGTCATTTCAAAATTTAAAAACTTGCACACAAAACTTGAGGTGACACCTTCATCTGTGTCATATGAGAAGCTTATCATCTACTGTTGCGGTTCACTTAAGGTGCATGTGGCTCTTGAGCTGGTGAATGAGATGTCTGAACAGGGTTTGACATTTTCGATGGAGGCATTACACTCCATTTTACAAGCTAGTAGTGAGAGTTGTGACTTTAATCTGGTTCACCAAATTTATTCAGTGATTAGCCGAGGCAATTTGAAGCCCAATAGCGAAACTTTCAGGAGTATGATAAATCTTTGTGTGAAAATGAAGGATTATGAGGGTGCCTATAGCATGCTGAGTGATTTGGAGAAAATGAATTTGACGCCCACAGCTGCCATGTACAATGCTATAATGGCTGGATATTTCCGAGAGAAGAACTTGTCCGGTGGGTTAAAGGTTCTCAAACAAATGAAAGAAGCAGATGTAAAACCAGATTCCCACACTTTCAGCCATCTAATAACCAACTGCAACTCTGAAGAGGACATAAACATGTATTATGAAGAAATGAAGCGATCTGGAATTCAAGTTACCAAGCAAGTTTTCATGGCACTTGTAAATGCATATGCAGCTTGTGGACAGTTTGAAAAGGCAAAACAGGTACTCTTGGACAAGGGAATTCCAGTAAAGAGCTTCAATGAGATTAAAAGTGTGCTTGTCCAAGCCCTTGCATCACATGGGCAATTGTCTGATGCATTTAATACATATGAAGAGATCAAGCAAGCTGGATGCAGTTTGGAGCCGAAAGCTGTTATAAGTCTTATCGAGCACCTTCAATCTGATGAAGAAGCATTAAGCAGATTACTCCTCCTACTTGAGACACTAAATGATCCAAACTATTGGCTTGATGGTTGCTTGAGAACTATCTTGTATTGTGTTCGTTACAAGCATTTAAGACCTGCCGTCAATTTGCTTGAGCAACTCAGGGATCAGGTCTGTACTGACGAATTAGCTCTAGAAGTAATTTTTGATAAGGTGTTTTCCTTCATAGCAGAATCGGAGTCTACATCTTTAGAGTTTGGCCTAGATTTGCTTCATGCTATGAAGAGTGAGCTTGGCCTCACCCCTTCACGAAAATGTCTCGATTTTCTTCTCCACGCTTGTGTCACTGCCAAAGATCTGCAAAGTTCCCTATTTGTATGGCAAGAATATCAAGCCGCTGGCTTGCCTTACAATACCTTAAGCTTTTTAAGGATGTATCAAGCCCTTTTGGCTGCAGGGGACCGAAAGGCTGCAAAAGTTTTGGGACGTAAAATTCCTAAAGACGATCCTCATGTTCGGTCTATCATTGAATCATGTACAGTGACTTATTTAGAGAAGAAGGAAGAAAAGAAAAAGAAAAAGAAATGA

Protein Analysis

810

Amino Acids

91.57

Weight (kDa)

5.75

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 372 - 533 1.9e-12 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 444 - 559 2.8e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 459 - 517 2.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 470 - 517 2.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica MD03G1211600.v1.1
prunus_persica Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis pycom03g16030
rosa_chinensis RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa Rorug05G0165400
rosa_samantha Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1835
Acc36I ACCTGC 1 cut(s) 1987
AccB1I GGYRCC 1 cut(s) 1364
AccI GTMKAC 2 cut(s) 360, 2084
AccII CGCG 1 cut(s) 300
AciI CCGC 6 cut(s) 72, 283, 563, 1037, 1134, 2238
AclWI GGATC 4 cut(s) 716, 1904, 2016, 2342
AcuI CTGAAG 1 cut(s) 1578
AcyI GRCGYC 2 cut(s) 102, 1406
AdeI CACNNNGTG 1 cut(s) 815
AfaI GTAC 5 cut(s) 181, 1424, 1683, 2020, 2380
AfiI CCNNNNNNNGG 1 cut(s) 832
AflII CTTAAG 2 cut(s) 1142, 2260
AflIII ACRYGT 2 cut(s) 363, 1572
AhdI GACNNNNNGTC 1 cut(s) 1982
AjnI CCWGG 2 cut(s) 195, 912
AjuI GAANNNNNNNTTGG 2 cut(s) 1607, 1639
AleI CACNNNNGTG 1 cut(s) 2181
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
Alw21I GWGCWC 2 cut(s) 744, 1851
Alw26I GTCTC 3 cut(s) 124, 1892, 2165
AlwI GGATC 4 cut(s) 716, 1904, 2016, 2342
AlwNI CAGNNNCTG 1 cut(s) 975
AoxI GGCC 2 cut(s) 2101, 2137
ApeKI GCWGC 6 cut(s) 145, 980, 1415, 1649, 2294, 2312
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 3 cut(s) 584, 949, 2302
AsuHPI GGTGA 5 cut(s) 873, 1099, 1180, 1256, 2134
AvaII GGWCC 3 cut(s) 584, 949, 2302
BanI GGYRCC 1 cut(s) 1364
BanII GRGCYC 1 cut(s) 744
Bbv12I GWGCWC 2 cut(s) 744, 1851
BbvI GCAGC 6 cut(s) 157, 992, 1402, 1661, 2281, 2299
BccI CCATC 5 cut(s) 47, 761, 1198, 1542, 1922
BceAI ACGGC 1 cut(s) 1967
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 350, 384
BciT130I CCWGG 2 cut(s) 197, 914
BciVI GTATCC 2 cut(s) 350, 680
BcoDI GTCTC 3 cut(s) 124, 1892, 2165
BfaI CTAG 6 cut(s) 141, 380, 477, 1233, 2036, 2105
BfmI CTRYAG 3 cut(s) 1006, 1369, 2295
BfrI CTTAAG 2 cut(s) 1142, 2260
BfuAI ACCTGC 1 cut(s) 1987
BfuI GTATCC 2 cut(s) 350, 680
BglI GCCNNNNNGGC 1 cut(s) 2291
BglII AGATCT 1 cut(s) 2197
BisI GCNGC 8 cut(s) 146, 283, 981, 1416, 1650, 2238, 2295, 2313
BlpI GCTNAGC 2 cut(s) 17, 34
BlsI GCNGC 8 cut(s) 147, 284, 982, 1417, 1651, 2239, 2296, 2314
Bme1390I CCNGG 2 cut(s) 197, 914
Bme18I GGWCC 3 cut(s) 584, 949, 2302
BmeRI GACNNNNNGTC 1 cut(s) 1982
BmgT120I GGNCC 3 cut(s) 584, 949, 2302
BmiI GGNNCC 4 cut(s) 923, 1366, 1821, 2303
BmrFI CCNGG 2 cut(s) 197, 914
BmsI GCATC 6 cut(s) 199, 261, 452, 1760, 1762, 1799
Bpu1102I GCTNAGC 2 cut(s) 17, 34
BpuEI CTTGAG 5 cut(s) 1103, 1181, 1916, 1957, 2015
Bsa29I ATCGAT 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 899
BsaHI GRCGYC 2 cut(s) 102, 1406
BsaJI CCNNGG 4 cut(s) 96, 242, 913, 1288
BsaWI WCCGGW 3 cut(s) 825, 883, 1466
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse1I ACTGG 2 cut(s) 969, 1703
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 197, 914
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 4 cut(s) 96, 242, 913, 1288
BseGI GGATG 3 cut(s) 1051, 1814, 2280
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 4 cut(s) 48, 347, 1370, 2017
BseNI ACTGG 2 cut(s) 969, 1703
BseRI GAGGAG 4 cut(s) 46, 49, 52, 1877
BseXI GCAGC 6 cut(s) 157, 992, 1402, 1661, 2281, 2299
BsgI GTGCAG 1 cut(s) 999
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 2 cut(s) 2103, 2139
BshNI GGYRCC 1 cut(s) 1364
BshVI ATCGAT 1 cut(s) 204
BsiHKAI GWGCWC 2 cut(s) 744, 1851
BsiSI CCGG 3 cut(s) 826, 884, 1467
BslFI GGGAC 4 cut(s) 170, 397, 2315, 2340
BslI CCNNNNNNNGG 1 cut(s) 832
BsmAI GTCTC 3 cut(s) 124, 1892, 2165
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 4 cut(s) 170, 397, 2315, 2340
BsmI GAATGC 1 cut(s) 1023
BsnI GGCC 2 cut(s) 2103, 2139
Bsp1286I GDGCHC 2 cut(s) 744, 1851
Bsp1407I TGTACA 2 cut(s) 1422, 2378
Bsp143I GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
Bsp1720I GCTNAGC 2 cut(s) 17, 34
Bsp19I CCATGG 1 cut(s) 242
Bsp68I TCGCGA 1 cut(s) 300
BspACI CCGC 6 cut(s) 72, 283, 563, 1037, 1134, 2238
BspANI GGCC 2 cut(s) 2103, 2139
BspCNI CTCAG 4 cut(s) 47, 346, 1371, 2016
BspDI ATCGAT 1 cut(s) 204
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 4 cut(s) 923, 1366, 1821, 2303
BspMAI CTGCAG 1 cut(s) 2299
BspMI ACCTGC 1 cut(s) 1987
BspPI GGATC 4 cut(s) 716, 1904, 2016, 2342
BspT107I GGYRCC 1 cut(s) 1364
BspTI CTTAAG 2 cut(s) 1142, 2260
BsrDI GCAATG 1 cut(s) 275
BsrGI TGTACA 2 cut(s) 1422, 2378
BsrI ACTGG 2 cut(s) 969, 1703
BssECI CCNNGG 4 cut(s) 96, 242, 913, 1288
BssMI GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
BssNI GRCGYC 2 cut(s) 102, 1406
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 197, 914
Bst4CI ACNGT 5 cut(s) 174, 977, 1130, 1662, 2383
Bst6I CTCTTC 6 cut(s) 70, 415, 564, 1554, 1785, 2120
BstACI GRCGYC 2 cut(s) 102, 1406
BstAFI CTTAAG 2 cut(s) 1142, 2260
BstAUI TGTACA 2 cut(s) 1422, 2378
BstBAI YACGTR 1 cut(s) 899
BstC8I GCNNGC 4 cut(s) 1376, 1803, 2242, 2246
BstDEI CTNAG 6 cut(s) 17, 34, 333, 850, 1379, 2003
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 1051, 1814, 2280
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
BstMAI GTCTC 3 cut(s) 124, 1892, 2165
BstMBI GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
BstMWI GCNNNNNNNGC 6 cut(s) 101, 482, 639, 1436, 1649, 2291
BstNI CCWGG 2 cut(s) 197, 914
BstNSI RCATGY 4 cut(s) 367, 1154, 1378, 1576
BstSCI CCNGG 2 cut(s) 195, 912
BstSFI CTRYAG 3 cut(s) 1006, 1369, 2295
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 6 cut(s) 157, 992, 1402, 1661, 2281, 2299
BstX2I RGATCY 1 cut(s) 2197
BstXI CCANNNNNNTGG 1 cut(s) 1920
BstYI RGATCY 1 cut(s) 2197
Bsu15I ATCGAT 1 cut(s) 204
BsuI GTATCC 2 cut(s) 350, 680
BsuRI GGCC 2 cut(s) 2103, 2139
BsuTUI ATCGAT 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 3 cut(s) 1051, 1814, 2280
BtsI GCAGTG 1 cut(s) 2187
BtsIMutI CAGTG 4 cut(s) 976, 1284, 2187, 2388
BtuMI TCGCGA 1 cut(s) 300
BveI ACCTGC 1 cut(s) 1987
Cac8I GCNNGC 4 cut(s) 1376, 1803, 2242, 2246
CaiI CAGNNNCTG 1 cut(s) 975
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 3 cut(s) 584, 949, 2302
ClaI ATCGAT 1 cut(s) 204
CseI GACGC 2 cut(s) 110, 1414
Csp6I GTAC 5 cut(s) 180, 1423, 1682, 2019, 2379
CviQI GTAC 5 cut(s) 180, 1423, 1682, 2019, 2379
DdeI CTNAG 6 cut(s) 17, 34, 333, 850, 1379, 2003
DpnI GATC 8 cut(s) 710, 1004, 1597, 1796, 1911, 2010, 2199, 2349
DpnII GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
DraI TTTAAA 3 cut(s) 907, 964, 1063
DraIII CACNNNGTG 1 cut(s) 815
DriI GACNNNNNGTC 1 cut(s) 1982
Eam1104I CTCTTC 6 cut(s) 70, 415, 564, 1554, 1785, 2120
Eam1105I GACNNNNNGTC 1 cut(s) 1982
EarI CTCTTC 6 cut(s) 70, 415, 564, 1554, 1785, 2120
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 744
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 3 cut(s) 584, 949, 2302
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 1578
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 949
EcoRI GAATTC 2 cut(s) 1602, 1698
EcoRII CCWGG 2 cut(s) 195, 912
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 242
EcoT22I ATGCAT 4 cut(s) 451, 467, 1645, 1777
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 124
FaqI GGGAC 4 cut(s) 170, 397, 2315, 2340
FauI CCCGC 1 cut(s) 570
FauNDI CATATG 5 cut(s) 513, 580, 1108, 1645, 1786
FblI GTMKAC 2 cut(s) 360, 2084
Fnu4HI GCNGC 8 cut(s) 146, 283, 981, 1416, 1650, 2238, 2295, 2313
FokI GGATG 3 cut(s) 1058, 1821, 2287
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 8 cut(s) 146, 283, 981, 1416, 1650, 2238, 2295, 2313
FspBI CTAG 6 cut(s) 141, 380, 477, 1233, 2036, 2105
GlaI GCGC 1 cut(s) 281
GluI GCNGC 8 cut(s) 146, 283, 981, 1416, 1650, 2238, 2295, 2313
HaeIII GGCC 2 cut(s) 2103, 2139
HapII CCGG 3 cut(s) 826, 884, 1467
HgaI GACGC 2 cut(s) 110, 1414
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 2 cut(s) 102, 1406
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 2 cut(s) 1115, 2263
HinfI GANTC 9 cut(s) 134, 215, 714, 733, 932, 1517, 2075, 2081, 2372
HpaII CCGG 3 cut(s) 826, 884, 1467
HphI GGTGA 5 cut(s) 873, 1099, 1180, 1256, 2134
Hpy166II GTNNAC 6 cut(s) 361, 775, 1139, 1264, 1658, 2085
Hpy188I TCNGA 9 cut(s) 130, 713, 1029, 1183, 1451, 1558, 1771, 1861, 2080
Hpy8I GTNNAC 6 cut(s) 361, 775, 1139, 1264, 1658, 2085
HpyCH4III ACNGT 5 cut(s) 174, 977, 1130, 1662, 2383
HpyCH4IV ACGT 2 cut(s) 898, 2329
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 482, 639, 1436, 1649, 2291
HpyF3I CTNAG 6 cut(s) 17, 34, 333, 850, 1379, 2003
HpySE526I ACGT 2 cut(s) 898, 2329
Hsp92I GRCGYC 2 cut(s) 102, 1406
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
LmnI GCTCC 4 cut(s) 473, 490, 927, 1819
Lsp1109I GCAGC 6 cut(s) 157, 992, 1402, 1661, 2281, 2299
LweI GCATC 6 cut(s) 199, 261, 452, 1760, 1762, 1799
MaeI CTAG 6 cut(s) 141, 380, 477, 1233, 2036, 2105
MaeII ACGT 2 cut(s) 898, 2329
MaeIII GTNAC 9 cut(s) 761, 821, 971, 1087, 1247, 1609, 1961, 2185, 2383
MalI GATC 8 cut(s) 710, 1004, 1597, 1796, 1911, 2010, 2199, 2349
MboI GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
MfeI CAATTG 1 cut(s) 1763
MflI RGATCY 1 cut(s) 2197
MhlI GDGCHC 2 cut(s) 744, 1851
MlyI GAGTC 3 cut(s) 723, 941, 2090
MmeI TCCRAC 1 cut(s) 481
Mph1103I ATGCAT 4 cut(s) 451, 467, 1645, 1777
MslI CAYNNNNRTG 4 cut(s) 614, 1571, 2155, 2181
MspA1I CMGCKG 2 cut(s) 1415, 2240
MspCI CTTAAG 2 cut(s) 1142, 2260
MspI CCGG 3 cut(s) 826, 884, 1467
MspR9I CCNGG 2 cut(s) 197, 914
MunI CAATTG 1 cut(s) 1763
Mva1269I GAATGC 1 cut(s) 1023
MvaI CCWGG 2 cut(s) 197, 914
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 6 cut(s) 101, 482, 639, 1436, 1649, 2291
NcoI CCATGG 1 cut(s) 242
NdeI CATATG 5 cut(s) 513, 580, 1108, 1645, 1786
NdeII GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
NlaIV GGNNCC 4 cut(s) 923, 1366, 1821, 2303
NmeAIII GCCGAG 3 cut(s) 121, 668, 1313
NmuCI GTSAC 6 cut(s) 821, 971, 1087, 1247, 2185, 2383
NruI TCGCGA 1 cut(s) 300
NsiI ATGCAT 4 cut(s) 451, 467, 1645, 1777
NspI RCATGY 4 cut(s) 367, 1154, 1378, 1576
OliI CACNNNNGTG 1 cut(s) 2181
PaeI GCATGC 1 cut(s) 1378
PciI ACATGT 2 cut(s) 363, 1572
PctI GAATGC 1 cut(s) 1023
PfeI GAWTC 6 cut(s) 134, 215, 733, 1517, 2075, 2372
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 8 cut(s) 147, 284, 982, 1417, 1651, 2239, 2296, 2314
PleI GAGTC 3 cut(s) 722, 940, 2089
PpsI GAGTC 3 cut(s) 722, 940, 2089
Ppu21I YACGTR 1 cut(s) 899
PpuMI RGGWCCY 1 cut(s) 949
PscI ACATGT 2 cut(s) 363, 1572
PsiI TTATAA 1 cut(s) 1835
Psp124BI GAGCTC 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 949
Psp6I CCWGG 2 cut(s) 195, 912
PspGI CCWGG 2 cut(s) 195, 912
PspN4I GGNNCC 4 cut(s) 923, 1366, 1821, 2303
PspPI GGNCC 3 cut(s) 584, 949, 2302
PspPPI RGGWCCY 1 cut(s) 949
PstI CTGCAG 1 cut(s) 2299
PstNI CAGNNNCTG 1 cut(s) 975
PsuI RGATCY 1 cut(s) 2197
PvuII CAGCTG 1 cut(s) 1415
RruI TCGCGA 1 cut(s) 300
RsaI GTAC 5 cut(s) 181, 1424, 1683, 2020, 2380
RsaNI GTAC 5 cut(s) 180, 1423, 1682, 2019, 2379
RseI CAYNNNNRTG 4 cut(s) 614, 1571, 2155, 2181
SacI GAGCTC 1 cut(s) 744
SalI GTCGAC 1 cut(s) 359
SatI GCNGC 8 cut(s) 146, 283, 981, 1416, 1650, 2238, 2295, 2313
Sau3AI GATC 8 cut(s) 708, 1002, 1595, 1794, 1909, 2008, 2197, 2347
Sau96I GGNCC 3 cut(s) 584, 949, 2302
SchI GAGTC 3 cut(s) 723, 941, 2090
ScrFI CCNGG 2 cut(s) 197, 914
SduI GDGCHC 2 cut(s) 744, 1851
SfaNI GCATC 6 cut(s) 199, 261, 452, 1760, 1762, 1799
SfcI CTRYAG 3 cut(s) 1006, 1369, 2295
SinI GGWCC 3 cut(s) 584, 949, 2302
SmiMI CAYNNNNRTG 4 cut(s) 614, 1571, 2155, 2181
SmlI CTYRAG 7 cut(s) 1082, 1142, 1160, 1895, 1936, 1994, 2260
SmoI CTYRAG 7 cut(s) 1082, 1142, 1160, 1895, 1936, 1994, 2260
SphI GCATGC 1 cut(s) 1378
SsiI CCGC 6 cut(s) 72, 283, 563, 1037, 1134, 2238
SspMI CTAG 6 cut(s) 141, 380, 477, 1233, 2036, 2105
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 2 cut(s) 195, 912
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 5 cut(s) 174, 977, 1130, 1662, 2383
TaiI ACGT 2 cut(s) 901, 2332
TaqI TCGA 7 cut(s) 137, 204, 360, 606, 1202, 1845, 2163
TaqII GACCGA 2 cut(s) 2319, 2349
TatI WGTACW 3 cut(s) 1422, 2018, 2378
TauI GCSGC 2 cut(s) 285, 2240
TfiI GAWTC 6 cut(s) 134, 215, 733, 1517, 2075, 2372
TscAI CASTG 4 cut(s) 976, 1284, 2194, 2388
TseFI GTSAC 6 cut(s) 821, 971, 1087, 1247, 2185, 2383
TseI GCWGC 6 cut(s) 145, 980, 1415, 1649, 2294, 2312
Tsp45I GTSAC 6 cut(s) 821, 971, 1087, 1247, 2185, 2383
TspGWI ACGGA 2 cut(s) 332, 576
TspRI CASTG 4 cut(s) 976, 1284, 2194, 2388
Vha464I CTTAAG 2 cut(s) 1142, 2260
VpaK11BI GGWCC 3 cut(s) 584, 949, 2302
XbaI TCTAGA 1 cut(s) 2035
XceI RCATGY 4 cut(s) 367, 1154, 1378, 1576
XmiI GTMKAC 2 cut(s) 360, 2084
XspI CTAG 6 cut(s) 141, 380, 477, 1233, 2036, 2105
Zsp2I ATGCAT 4 cut(s) 451, 467, 1645, 1777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.