Rh5CG290100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000531
Physical Location & Seq
Forward (+)
31910262 .. 31919520
9259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG290100.1

Sequence Viewer

Length: 1857 bp
ATGAAAGCCAAGAAGCTAAGCTCTCTCTTTCGCTCTGCCATCAAATACAAACCCTCCTCCTCCGCCAAATCGCTACCCTCACCCGCCGAGGACGCCACTCTCAAATTCATCTCTGCTTCCGAAGATTCGACTAGGCAGCTCCCTGGGGACATTTATTCAATACTGTGCGGTGGTACTTATCCTGATATCCGGGAAATCGATGATGCAGAATCTTTGGAGAGGGAATTGGACTTACCATGGTTTCCAGATTTATCCCATAGTGCGATGCCATTGCGCCGCAAAGAAGTTAGTCGCGAAAGGAAGCAGAGGTTTGCTTTCGGCAACACCCAGGGTATCCGTTTTGATAAGTTAGTCGACATGTGTGCCAACAGGCTAGGGACTGAAACCACTATTCAAGTGTTTGACAAATTGGGAAGAGAAACGGGTGTGAAAGAATGTAATGCATTGATAAAGAGATGCATAGAGGGGGCTAGGATTGCTCCTGATGAAGTAGTTGGAGAAAAGCATATGCAGTTGGCTTTCGAAATTTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAACATATGGTCCGTTTCTTGAATATCTTATTGACATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTACGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCAGACGAAGGAGATTTTGAAGCTGTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTTTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCAGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTGTTGGCATTCCGAATTTAGCGGTTGAGGATGTCATTTCAAAATTTAAAAACTTGCACACAAAACTTGAGGTGACACCTTCATCTGTGTCATATGAGAAGCTTATCATCTACTGTTGCGATTCACTTAAGGTGCATGTGGCTCTTGAGCTGGTGGATGAGATGTCTGAACAGGGTTTGACATTTTCGATGGATGCATTACACACCATTTTACAAGCTAGTAGTGAGAGTTGTGACTTTAATCTGGTTCACCAAATTTATTCAGTGATTAGCCGAGGCAATTTGAAGCCCAATAGCGAAACTTTCAGGAGTATGATAAATCTTTGTGTGAAAATGAAGGATTATGAGGGTGCCTATAGCATGCTGAGTGATTTGGAGAAAATGAATTTGACGCCCACAGCTGCCATGTACAATGCTATAATGGCTGGATATTTCCGAGAGAAGAACTTGTCCGGTGGGTTAAAGGTTCTCAAACAAATGAAAGAAGCAGATGTAAAACCAGATTCCCACACTTTCAGCCATCTAATAACCAACTGCAACTCTGAAGAGGACATAAACATGTATTATGAAGAAATGAAGCGATCTGGAATTCAAGTTACCAAGCAAGTTTTCATGGCACTTGTAAATGCATATGCAGCTTGTGGACAGTTTGAAAAGGCAAAACAGGTACTCTTAGACAAGGGAATTCCAGTGAAGAGCTTCAATGAGATTAAAAGTGTGCTTGTCCAAGCCCTTGCATCACATGGGCAATTGTCTGATGCATTTAATACATATGAAGAGATCAAGCAAGCTGGATGCAGTTTGGAGCCGAAAGCTGTTATAAGTCTTATCATTACTCCTCCTACTTGA

Protein Analysis

618

Amino Acids

69.69

Weight (kDa)

5.39

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 368 - 531 1.9e-13 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 442 - 557 1.7e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 457 - 515 1.9e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 468 - 515 1.5e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica MD03G1211600.v1.1
prunus_persica Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis pycom03g16030
rosa_chinensis RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa Rorug05G0165400
rosa_samantha Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1829
AccB1I GGYRCC 1 cut(s) 1358
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 294
AciI CCGC 6 cut(s) 63, 84, 168, 277, 557, 1031
AclWI GGATC 1 cut(s) 710
AcsI RAATTY 9 cut(s) 104, 525, 953, 1024, 1052, 1263, 1393, 1596, 1692
AcuI CTGAAG 1 cut(s) 1572
AcyI GRCGYC 2 cut(s) 93, 1400
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 3 cut(s) 175, 1418, 1677
AfiI CCNNNNNNNGG 1 cut(s) 826
AflII CTTAAG 1 cut(s) 1136
AflIII ACRYGT 2 cut(s) 357, 1566
AjnI CCWGG 3 cut(s) 142, 327, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 1601, 1633
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
Alw21I GWGCWC 1 cut(s) 738
AlwI GGATC 1 cut(s) 710
AlwNI CAGNNNCTG 1 cut(s) 969
ApeKI GCWGC 4 cut(s) 136, 974, 1409, 1643
ApoI RAATTY 9 cut(s) 104, 525, 953, 1024, 1052, 1263, 1393, 1596, 1692
Asp700I GAANNNNTTC 1 cut(s) 1706
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 578, 943
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 4 cut(s) 72, 867, 1093, 1250
AsuII TTCGAA 1 cut(s) 522
AvaII GGWCC 2 cut(s) 578, 943
BanI GGYRCC 1 cut(s) 1358
BanII GRGCYC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 4 cut(s) 148, 986, 1396, 1655
BccI CCATC 4 cut(s) 47, 755, 1192, 1536
BcgI CGANNNNNNTGC 4 cut(s) 253, 287, 344, 378
BciT130I CCWGG 3 cut(s) 144, 329, 908
BciVI GTATCC 2 cut(s) 344, 674
BcnI CCSGG 1 cut(s) 191
BfaI CTAG 4 cut(s) 132, 374, 471, 1227
BfmI CTRYAG 2 cut(s) 1000, 1363
BfrI CTTAAG 1 cut(s) 1136
BfuI GTATCC 2 cut(s) 344, 674
BisI GCNGC 5 cut(s) 137, 277, 975, 1410, 1644
BlpI GCTNAGC 1 cut(s) 17
BlsI GCNGC 5 cut(s) 138, 278, 976, 1411, 1645
Bme1390I CCNGG 4 cut(s) 144, 191, 329, 908
Bme18I GGWCC 2 cut(s) 578, 943
BmgT120I GGNCC 2 cut(s) 578, 943
BmiI GGNNCC 3 cut(s) 917, 1360, 1815
BmrFI CCNGG 4 cut(s) 144, 191, 329, 908
BmsI GCATC 7 cut(s) 193, 255, 446, 1192, 1754, 1756, 1793
Bpu1102I GCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 522
BpuEI CTTGAG 2 cut(s) 1097, 1175
BpuMI CCSGG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 893
BsaHI GRCGYC 2 cut(s) 93, 1400
BsaJI CCNNGG 8 cut(s) 87, 142, 143, 236, 327, 328, 907, 1282
BsaWI WCCGGW 2 cut(s) 877, 1460
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 826
Bse1I ACTGG 2 cut(s) 963, 1697
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 3 cut(s) 144, 329, 908
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 8 cut(s) 87, 142, 143, 236, 327, 328, 907, 1282
BseGI GGATG 4 cut(s) 1045, 1171, 1207, 1808
BseLI CCNNNNNNNGG 1 cut(s) 826
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 1364
BseNI ACTGG 2 cut(s) 963, 1697
BseRI GAGGAG 3 cut(s) 46, 49, 1836
BseXI GCAGC 4 cut(s) 148, 986, 1396, 1655
BsgI GTGCAG 1 cut(s) 993
Bsh1236I CGCG 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 1358
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 3 cut(s) 190, 878, 1461
BslFI GGGAC 2 cut(s) 161, 391
BslI CCNNNNNNNGG 1 cut(s) 826
BsmFI GGGAC 2 cut(s) 161, 391
BsmI GAATGC 1 cut(s) 1017
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 738
Bsp1407I TGTACA 1 cut(s) 1416
Bsp143I GATC 4 cut(s) 702, 996, 1589, 1788
Bsp1720I GCTNAGC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 236
Bsp68I TCGCGA 1 cut(s) 294
BspACI CCGC 6 cut(s) 63, 84, 168, 277, 557, 1031
BspCNI CTCAG 1 cut(s) 1365
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 917, 1360, 1815
BspPI GGATC 1 cut(s) 710
BspQI GCTCTTC 1 cut(s) 1697
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 1358
BspTI CTTAAG 1 cut(s) 1136
BsrDI GCAATG 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 1416
BsrI ACTGG 2 cut(s) 963, 1697
BssECI CCNNGG 8 cut(s) 87, 142, 143, 236, 327, 328, 907, 1282
BssMI GATC 4 cut(s) 702, 996, 1589, 1788
BssNI GRCGYC 2 cut(s) 93, 1400
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 3 cut(s) 144, 329, 908
Bst4CI ACNGT 4 cut(s) 165, 971, 1124, 1656
Bst6I CTCTTC 5 cut(s) 409, 558, 1548, 1697, 1779
BstACI GRCGYC 2 cut(s) 93, 1400
BstAFI CTTAAG 1 cut(s) 1136
BstAUI TGTACA 1 cut(s) 1416
BstBAI YACGTR 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 1370, 1797
BstDEI CTNAG 3 cut(s) 17, 1373, 1681
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 4 cut(s) 1045, 1171, 1207, 1808
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 4 cut(s) 705, 999, 1592, 1791
BstMBI GATC 4 cut(s) 702, 996, 1589, 1788
BstMWI GCNNNNNNNGC 5 cut(s) 92, 476, 633, 1430, 1643
BstNI CCWGG 3 cut(s) 144, 329, 908
BstNSI RCATGY 4 cut(s) 361, 1148, 1372, 1570
BstSCI CCNGG 4 cut(s) 142, 189, 327, 906
BstSFI CTRYAG 2 cut(s) 1000, 1363
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 4 cut(s) 148, 986, 1396, 1655
Bsu15I ATCGAT 1 cut(s) 198
BsuI GTATCC 2 cut(s) 344, 674
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 4 cut(s) 1045, 1171, 1207, 1808
BtsIMutI CAGTG 3 cut(s) 970, 1278, 1704
BtuMI TCGCGA 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 1370, 1797
CaiI CAGNNNCTG 1 cut(s) 969
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 578, 943
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 2 cut(s) 101, 1408
Csp6I GTAC 3 cut(s) 174, 1417, 1676
CviAII CATG 9 cut(s) 237, 358, 604, 1145, 1369, 1414, 1567, 1621, 1751
CviQI GTAC 3 cut(s) 174, 1417, 1676
DdeI CTNAG 3 cut(s) 17, 1373, 1681
DpnI GATC 4 cut(s) 704, 998, 1591, 1790
DpnII GATC 4 cut(s) 702, 996, 1589, 1788
DraI TTTAAA 3 cut(s) 901, 958, 1057
DraIII CACNNNGTG 1 cut(s) 809
Eam1104I CTCTTC 5 cut(s) 409, 558, 1548, 1697, 1779
EarI CTCTTC 5 cut(s) 409, 558, 1548, 1697, 1779
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 738
Eco32I GATATC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 578, 943
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 1572
EcoICRI GAGCTC 1 cut(s) 736
EcoO109I RGGNCCY 1 cut(s) 943
EcoRI GAATTC 2 cut(s) 1596, 1692
EcoRII CCWGG 3 cut(s) 142, 327, 906
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 236
EcoT22I ATGCAT 5 cut(s) 445, 461, 1207, 1639, 1771
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 9 cut(s) 240, 361, 607, 1148, 1372, 1417, 1570, 1624, 1754
FaqI GGGAC 2 cut(s) 161, 391
FatI CATG 9 cut(s) 236, 357, 603, 1144, 1368, 1413, 1566, 1620, 1750
FauI CCCGC 2 cut(s) 91, 564
FauNDI CATATG 5 cut(s) 507, 574, 1102, 1639, 1780
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 5 cut(s) 137, 277, 975, 1410, 1644
FokI GGATG 4 cut(s) 1052, 1178, 1214, 1815
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 5 cut(s) 137, 277, 975, 1410, 1644
FspBI CTAG 4 cut(s) 132, 374, 471, 1227
GlaI GCGC 1 cut(s) 275
GluI GCNGC 5 cut(s) 137, 277, 975, 1410, 1644
HapII CCGG 3 cut(s) 190, 878, 1461
HgaI GACGC 2 cut(s) 101, 1408
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 2 cut(s) 93, 1400
Hin1II CATG 9 cut(s) 240, 361, 607, 1148, 1372, 1417, 1570, 1624, 1754
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 7 cut(s) 125, 209, 708, 727, 926, 1130, 1511
HpaII CCGG 3 cut(s) 190, 878, 1461
HphI GGTGA 4 cut(s) 72, 867, 1093, 1250
Hpy166II GTNNAC 4 cut(s) 355, 769, 1258, 1652
Hpy188I TCNGA 7 cut(s) 121, 707, 1023, 1177, 1445, 1552, 1765
Hpy8I GTNNAC 4 cut(s) 355, 769, 1258, 1652
HpyAV CCTTC 7 cut(s) 535, 820, 906, 934, 956, 1098, 1339
HpyCH4III ACNGT 4 cut(s) 165, 971, 1124, 1656
HpyCH4IV ACGT 1 cut(s) 892
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 476, 633, 1430, 1643
HpyF3I CTNAG 3 cut(s) 17, 1373, 1681
HpySE526I ACGT 1 cut(s) 892
Hsp92I GRCGYC 2 cut(s) 93, 1400
Hsp92II CATG 9 cut(s) 240, 361, 607, 1148, 1372, 1417, 1570, 1624, 1754
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 4 cut(s) 702, 996, 1589, 1788
LguI GCTCTTC 1 cut(s) 1697
LmnI GCTCC 4 cut(s) 144, 484, 921, 1813
Lsp1109I GCAGC 4 cut(s) 148, 986, 1396, 1655
LweI GCATC 7 cut(s) 193, 255, 446, 1192, 1754, 1756, 1793
MaeI CTAG 4 cut(s) 132, 374, 471, 1227
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 6 cut(s) 755, 815, 965, 1081, 1241, 1603
MalI GATC 4 cut(s) 704, 998, 1591, 1790
MboI GATC 4 cut(s) 702, 996, 1589, 1788
MboII GAAGA 8 cut(s) 134, 426, 575, 1462, 1565, 1589, 1714, 1796
MfeI CAATTG 1 cut(s) 1757
MhlI GDGCHC 1 cut(s) 738
MlyI GAGTC 2 cut(s) 717, 935
MmeI TCCRAC 1 cut(s) 475
Mph1103I ATGCAT 5 cut(s) 445, 461, 1207, 1639, 1771
MroXI GAANNNNTTC 1 cut(s) 1706
MseI TTAA 9 cut(s) 531, 900, 957, 1056, 1137, 1248, 1469, 1719, 1773
MslI CAYNNNNRTG 2 cut(s) 608, 1565
MspA1I CMGCKG 1 cut(s) 1409
MspCI CTTAAG 1 cut(s) 1136
MspI CCGG 3 cut(s) 190, 878, 1461
MspR9I CCNGG 4 cut(s) 144, 191, 329, 908
MunI CAATTG 1 cut(s) 1757
Mva1269I GAATGC 1 cut(s) 1017
MvaI CCWGG 3 cut(s) 144, 329, 908
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 5 cut(s) 92, 476, 633, 1430, 1643
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 236
NdeI CATATG 5 cut(s) 507, 574, 1102, 1639, 1780
NdeII GATC 4 cut(s) 702, 996, 1589, 1788
NlaIII CATG 9 cut(s) 240, 361, 607, 1148, 1372, 1417, 1570, 1624, 1754
NlaIV GGNNCC 3 cut(s) 917, 1360, 1815
NmeAIII GCCGAG 3 cut(s) 112, 662, 1307
NmuCI GTSAC 4 cut(s) 815, 965, 1081, 1241
NruI TCGCGA 1 cut(s) 294
NsiI ATGCAT 5 cut(s) 445, 461, 1207, 1639, 1771
NspI RCATGY 4 cut(s) 361, 1148, 1372, 1570
NspV TTCGAA 1 cut(s) 522
PaeI GCATGC 1 cut(s) 1372
PasI CCCWGGG 2 cut(s) 143, 328
PciI ACATGT 2 cut(s) 357, 1566
PciSI GCTCTTC 1 cut(s) 1697
PctI GAATGC 1 cut(s) 1017
PdmI GAANNNNTTC 1 cut(s) 1706
PfeI GAWTC 5 cut(s) 125, 209, 727, 1130, 1511
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 5 cut(s) 138, 278, 976, 1411, 1645
PleI GAGTC 2 cut(s) 716, 934
PpsI GAGTC 2 cut(s) 716, 934
Ppu21I YACGTR 1 cut(s) 893
PpuMI RGGWCCY 1 cut(s) 943
PscI ACATGT 2 cut(s) 357, 1566
PsiI TTATAA 1 cut(s) 1829
Psp124BI GAGCTC 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 943
Psp6I CCWGG 3 cut(s) 142, 327, 906
PspGI CCWGG 3 cut(s) 142, 327, 906
PspN4I GGNNCC 3 cut(s) 917, 1360, 1815
PspPI GGNCC 2 cut(s) 578, 943
PspPPI RGGWCCY 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 969
PvuII CAGCTG 1 cut(s) 1409
RruI TCGCGA 1 cut(s) 294
RsaI GTAC 3 cut(s) 175, 1418, 1677
RsaNI GTAC 3 cut(s) 174, 1417, 1676
RseI CAYNNNNRTG 2 cut(s) 608, 1565
SacI GAGCTC 1 cut(s) 738
SalI GTCGAC 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 1697
SaqAI TTAA 9 cut(s) 531, 900, 957, 1056, 1137, 1248, 1469, 1719, 1773
SatI GCNGC 5 cut(s) 137, 277, 975, 1410, 1644
Sau3AI GATC 4 cut(s) 702, 996, 1589, 1788
Sau96I GGNCC 2 cut(s) 578, 943
SchI GAGTC 2 cut(s) 717, 935
ScrFI CCNGG 4 cut(s) 144, 191, 329, 908
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 7 cut(s) 193, 255, 446, 1192, 1754, 1756, 1793
SfcI CTRYAG 2 cut(s) 1000, 1363
SfuI TTCGAA 1 cut(s) 522
SinI GGWCC 2 cut(s) 578, 943
SmiMI CAYNNNNRTG 2 cut(s) 608, 1565
SmlI CTYRAG 3 cut(s) 1076, 1136, 1154
SmoI CTYRAG 3 cut(s) 1076, 1136, 1154
SphI GCATGC 1 cut(s) 1372
SsiI CCGC 6 cut(s) 63, 84, 168, 277, 557, 1031
SspMI CTAG 4 cut(s) 132, 374, 471, 1227
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 4 cut(s) 142, 189, 327, 906
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 4 cut(s) 165, 971, 1124, 1656
TaiI ACGT 1 cut(s) 895
TaqI TCGA 5 cut(s) 128, 198, 354, 522, 1196
TatI WGTACW 1 cut(s) 1416
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 5 cut(s) 125, 209, 727, 1130, 1511
Tru1I TTAA 9 cut(s) 531, 900, 957, 1056, 1137, 1248, 1469, 1719, 1773
Tru9I TTAA 9 cut(s) 531, 900, 957, 1056, 1137, 1248, 1469, 1719, 1773
TscAI CASTG 3 cut(s) 970, 1278, 1704
TseFI GTSAC 4 cut(s) 815, 965, 1081, 1241
TseI GCWGC 4 cut(s) 136, 974, 1409, 1643
Tsp45I GTSAC 4 cut(s) 815, 965, 1081, 1241
TspGWI ACGGA 2 cut(s) 326, 570
TspRI CASTG 3 cut(s) 970, 1278, 1704
Vha464I CTTAAG 1 cut(s) 1136
VpaK11BI GGWCC 2 cut(s) 578, 943
XapI RAATTY 9 cut(s) 104, 525, 953, 1024, 1052, 1263, 1393, 1596, 1692
XceI RCATGY 4 cut(s) 361, 1148, 1372, 1570
XmiI GTMKAC 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 1706
XspI CTAG 4 cut(s) 132, 374, 471, 1227
Zsp2I ATGCAT 5 cut(s) 445, 461, 1207, 1639, 1771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.